Mutagenetix > Incidental Mutation

Incidental Mutation 'R6457:Vmn1r86'

516525

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r86

Ensembl Gene

ENSMUSG00000070816

Gene Name

vomeronasal 1 receptor 86

Synonyms

Gm10301

MMRRC Submission

044592-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.049) question?

Stock #

R6457 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

12835924-12836874 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 12836279 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 199 (M199K)

Ref Sequence

ENSEMBL: ENSMUSP00000154549 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000094828] [ENSMUST00000226604] [ENSMUST00000227220] [ENSMUST00000227700]

AlphaFold

L7N213

Predicted Effect

possibly damaging
Transcript: ENSMUST00000094828
AA Change: M199K

PolyPhen 2 Score 0.699 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000092423
Gene: ENSMUSG00000070816
AA Change: M199K

Domain	Start	End	E-Value	Type
Pfam:TAS2R	1	306	1.1e-14	PFAM
Pfam:V1R	35	301	4e-31	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210729

Predicted Effect

possibly damaging
Transcript: ENSMUST00000226604
AA Change: M199K

PolyPhen 2 Score 0.699 (Sensitivity: 0.86; Specificity: 0.92)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000227220
AA Change: M199K

PolyPhen 2 Score 0.699 (Sensitivity: 0.86; Specificity: 0.92)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000227700
AA Change: M149K

PolyPhen 2 Score 0.600 (Sensitivity: 0.87; Specificity: 0.91)

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.1%
20x: 94.3%

Validation Efficiency

97% (63/65)

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	T	A	3: 137,772,383 (GRCm39)	V524E	probably damaging	Het
Acer2	T	A	4: 86,818,808 (GRCm39)	M152K	probably damaging	Het
Actn3	T	C	19: 4,921,876 (GRCm39)	D130G	probably damaging	Het
Ank1	T	A	8: 23,577,983 (GRCm39)	F211Y	probably damaging	Het
Ankfn1	C	T	11: 89,282,670 (GRCm39)	A326T	probably benign	Het
Ankrd11	G	A	8: 123,635,503 (GRCm39)	R44C	probably damaging	Het
Ankrd46	A	G	15: 36,484,217 (GRCm39)		probably benign	Het
Aurkb	G	A	11: 68,939,172 (GRCm39)	E132K	possibly damaging	Het
Bsdc1	C	T	4: 129,359,069 (GRCm39)	T9I	possibly damaging	Het
Card14	C	T	11: 119,230,428 (GRCm39)	R767*	probably null	Het
Ccdc82	T	A	9: 13,272,745 (GRCm39)	F411L	possibly damaging	Het
Col12a1	C	T	9: 79,552,973 (GRCm39)	G2106D	probably damaging	Het
Col27a1	T	A	4: 63,237,701 (GRCm39)		probably benign	Het
Cox10	A	G	11: 63,855,198 (GRCm39)	L361P	probably damaging	Het
Cox18	A	G	5: 90,371,548 (GRCm39)	I84T	probably benign	Het
Dhrs3	T	C	4: 144,646,522 (GRCm39)	S125P	probably damaging	Het
Fbxl15	A	G	19: 46,317,765 (GRCm39)	H149R	probably benign	Het
Flg2	T	A	3: 93,127,789 (GRCm39)	S2234T	unknown	Het
Gtf2e1	A	C	16: 37,356,698 (GRCm39)		probably null	Het
H2-Q7	A	T	17: 35,658,655 (GRCm39)	S98C	probably damaging	Het
Hcn2	G	T	10: 79,569,607 (GRCm39)	E536*	probably null	Het
Kat6b	A	T	14: 21,720,748 (GRCm39)	H1700L	probably damaging	Het
Klhl3	C	T	13: 58,248,192 (GRCm39)	V35I	probably benign	Het
Krt34	A	T	11: 99,930,916 (GRCm39)	L162Q	probably damaging	Het
Ly9	A	G	1: 171,416,663 (GRCm39)	S644P	probably damaging	Het
Magi1	A	T	6: 93,676,620 (GRCm39)	V685E	probably damaging	Het
Malrd1	A	G	2: 15,531,408 (GRCm39)		probably benign	Het
Malrd1	A	T	2: 15,672,740 (GRCm39)	H599L	probably benign	Het
Matn2	T	A	15: 34,426,380 (GRCm39)	C631S	probably damaging	Het
Megf8	A	T	7: 25,049,120 (GRCm39)	D1739V	probably damaging	Het
Mlf1	G	A	3: 67,300,277 (GRCm39)	R98Q	probably benign	Het
Mprip	T	A	11: 59,649,815 (GRCm39)	I1173K	possibly damaging	Het
Mrc1	A	G	2: 14,275,016 (GRCm39)	D439G	probably damaging	Het
Mroh5	A	T	15: 73,662,691 (GRCm39)	W208R	probably damaging	Het
Ms4a5	T	G	19: 11,256,646 (GRCm39)	I84L	probably benign	Het
Myt1	G	A	2: 181,405,218 (GRCm39)		probably null	Het
Nbea	T	A	3: 55,907,990 (GRCm39)	H1374L	probably damaging	Het
Nbeal1	T	A	1: 60,292,633 (GRCm39)	I1095K	probably benign	Het
Nolc1	A	G	19: 46,071,509 (GRCm39)		probably benign	Het
Nr5a2	A	G	1: 136,887,976 (GRCm39)	L18P	probably benign	Het
Nup188	G	T	2: 30,212,199 (GRCm39)	C562F	probably damaging	Het
Obscn	A	G	11: 58,971,597 (GRCm39)	V2415A	probably damaging	Het
Pacsin2	A	T	15: 83,263,879 (GRCm39)		probably null	Het
Pias3	A	G	3: 96,606,839 (GRCm39)	H34R	possibly damaging	Het
Ppfia2	T	C	10: 106,729,361 (GRCm39)	V903A	probably damaging	Het
Pramel1	T	A	4: 143,123,275 (GRCm39)	L84Q	probably damaging	Het
Pramel6	G	A	2: 87,339,782 (GRCm39)	C182Y	probably damaging	Het
Prdm4	A	G	10: 85,743,896 (GRCm39)	Y120H	probably damaging	Het
Prss28	A	G	17: 25,530,331 (GRCm39)	M212V	probably benign	Het
Rbp3	G	T	14: 33,677,224 (GRCm39)	G391*	probably null	Het
Rc3h2	C	T	2: 37,301,151 (GRCm39)		probably null	Het
Ret	A	G	6: 118,150,582 (GRCm39)	F645L	probably benign	Het
Saxo5	T	C	8: 3,529,268 (GRCm39)	L251P	probably damaging	Het
Sgsm2	A	G	11: 74,755,995 (GRCm39)	S402P	possibly damaging	Het
Shc3	T	A	13: 51,636,915 (GRCm39)		probably null	Het
Slc25a16	A	G	10: 62,776,938 (GRCm39)	N246S	probably benign	Het
Snrpd1	T	A	18: 10,623,694 (GRCm39)	H26Q	probably benign	Het
Thsd1	A	G	8: 22,733,363 (GRCm39)	T137A	probably damaging	Het
Tnik	A	T	3: 28,593,597 (GRCm39)	H151L	probably damaging	Het
Tns1	T	A	1: 73,957,209 (GRCm39)	K1725N	probably damaging	Het
Tomm40l	T	A	1: 171,048,161 (GRCm39)	T147S	probably damaging	Het
Tomm6	G	T	17: 47,998,932 (GRCm39)		probably benign	Het
Trp53	G	A	11: 69,480,440 (GRCm39)	C272Y	probably damaging	Het
Trpm7	A	T	2: 126,649,214 (GRCm39)	V1492E	probably benign	Het
Tsen2	G	A	6: 115,536,592 (GRCm39)	R116H	probably benign	Het
Uvrag	A	G	7: 98,555,726 (GRCm39)	F456S	probably damaging	Het
Vmn2r4	C	T	3: 64,317,378 (GRCm39)	C120Y	probably damaging	Het

Other mutations in Vmn1r86

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00492:Vmn1r86	APN	7	12,836,468 (GRCm39)	missense	possibly damaging	0.91
IGL01124:Vmn1r86	APN	7	12,836,856 (GRCm39)	missense	probably benign	0.04
IGL01291:Vmn1r86	APN	7	12,836,433 (GRCm39)	missense	probably benign	0.14
IGL02347:Vmn1r86	APN	7	12,836,574 (GRCm39)	missense	probably damaging	0.99
IGL02457:Vmn1r86	APN	7	12,836,707 (GRCm39)	missense	probably benign
IGL02983:Vmn1r86	APN	7	12,836,741 (GRCm39)	missense	probably damaging	1.00
ANU05:Vmn1r86	UTSW	7	12,836,433 (GRCm39)	missense	probably benign	0.14
R0304:Vmn1r86	UTSW	7	12,836,707 (GRCm39)	missense	probably benign
R0525:Vmn1r86	UTSW	7	12,836,088 (GRCm39)	missense	probably benign	0.13
R1958:Vmn1r86	UTSW	7	12,836,621 (GRCm39)	missense	possibly damaging	0.94
R2227:Vmn1r86	UTSW	7	12,836,847 (GRCm39)	missense	probably benign	0.00
R3149:Vmn1r86	UTSW	7	12,836,358 (GRCm39)	nonsense	probably null
R3896:Vmn1r86	UTSW	7	12,836,093 (GRCm39)	missense	probably benign	0.18
R4735:Vmn1r86	UTSW	7	12,836,221 (GRCm39)	missense	probably damaging	1.00
R5219:Vmn1r86	UTSW	7	12,836,382 (GRCm39)	missense	probably damaging	1.00
R6003:Vmn1r86	UTSW	7	12,836,125 (GRCm39)	nonsense	probably null
R7442:Vmn1r86	UTSW	7	12,835,983 (GRCm39)	missense	possibly damaging	0.70
R7622:Vmn1r86	UTSW	7	12,836,685 (GRCm39)	missense	probably benign	0.07
R8436:Vmn1r86	UTSW	7	12,836,771 (GRCm39)	missense	probably benign	0.25
R9141:Vmn1r86	UTSW	7	12,836,789 (GRCm39)	nonsense	probably null
R9374:Vmn1r86	UTSW	7	12,836,781 (GRCm39)	missense	possibly damaging	0.86
R9398:Vmn1r86	UTSW	7	12,836,261 (GRCm39)	missense	probably damaging	0.98
R9551:Vmn1r86	UTSW	7	12,836,781 (GRCm39)	missense	possibly damaging	0.86
R9552:Vmn1r86	UTSW	7	12,836,781 (GRCm39)	missense	possibly damaging	0.86
R9606:Vmn1r86	UTSW	7	12,836,741 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGGGTGATGGAGTTGTTCAACC -3'
(R):5'- CTTAAGCCAAGACTCTCTACATGG -3'

Sequencing Primer
(F):5'- GTGATGGAGTTGTTCAACCAATAAG -3'
(R):5'- GGCTGATTAATCTACTTATCTACGGG -3'

Posted On

2018-05-21