Mutagenetix > Incidental Mutation

Incidental Mutation 'R6477:Zfp60'

516838

Institutional Source

Beutler Lab

Gene Symbol

Zfp60

Ensembl Gene

ENSMUSG00000037640

Gene Name

zinc finger protein 60

Synonyms

Mfg-3, Mfg3, 6330516O17Rik

MMRRC Submission

044609-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6477 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

27430834-27451114 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 27449228 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Histidine at position 632 (R632H)

Ref Sequence

ENSEMBL: ENSMUSP00000132607 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000042641] [ENSMUST00000108336] [ENSMUST00000130997] [ENSMUST00000136373] [ENSMUST00000167955]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000042641
AA Change: R632H

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000036627
Gene: ENSMUSG00000037640
AA Change: R632H

Domain	Start	End	E-Value	Type
KRAB	14	75	8.48e-36	SMART
ZnF_C2H2	173	195	2.67e-1	SMART
ZnF_C2H2	201	223	2.09e-3	SMART
ZnF_C2H2	229	251	1.18e-2	SMART
ZnF_C2H2	257	279	2.24e-3	SMART
ZnF_C2H2	285	307	2.65e-5	SMART
ZnF_C2H2	313	335	5.5e-3	SMART
ZnF_C2H2	341	363	3.89e-3	SMART
ZnF_C2H2	369	391	6.32e-3	SMART
ZnF_C2H2	397	419	5.14e-3	SMART
ZnF_C2H2	425	447	7.9e-4	SMART
ZnF_C2H2	453	475	1.67e-2	SMART
ZnF_C2H2	481	503	4.4e-2	SMART
ZnF_C2H2	509	531	4.24e-4	SMART
ZnF_C2H2	537	559	5.21e-4	SMART
ZnF_C2H2	565	587	5.14e-3	SMART
ZnF_C2H2	593	615	3.89e-3	SMART
ZnF_C2H2	621	643	1.95e-3	SMART
ZnF_C2H2	649	671	6.67e-2	SMART
ZnF_C2H2	677	699	8.34e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000108336
AA Change: R632H

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000103973
Gene: ENSMUSG00000037640
AA Change: R632H

Domain	Start	End	E-Value	Type
KRAB	14	75	8.48e-36	SMART
ZnF_C2H2	173	195	2.67e-1	SMART
ZnF_C2H2	201	223	2.09e-3	SMART
ZnF_C2H2	229	251	1.18e-2	SMART
ZnF_C2H2	257	279	2.24e-3	SMART
ZnF_C2H2	285	307	2.65e-5	SMART
ZnF_C2H2	313	335	5.5e-3	SMART
ZnF_C2H2	341	363	3.89e-3	SMART
ZnF_C2H2	369	391	6.32e-3	SMART
ZnF_C2H2	397	419	5.14e-3	SMART
ZnF_C2H2	425	447	7.9e-4	SMART
ZnF_C2H2	453	475	1.67e-2	SMART
ZnF_C2H2	481	503	4.4e-2	SMART
ZnF_C2H2	509	531	4.24e-4	SMART
ZnF_C2H2	537	559	5.21e-4	SMART
ZnF_C2H2	565	587	5.14e-3	SMART
ZnF_C2H2	593	615	3.89e-3	SMART
ZnF_C2H2	621	643	1.95e-3	SMART
ZnF_C2H2	649	671	6.67e-2	SMART
ZnF_C2H2	677	699	8.34e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000130997

SMART Domains

Protein: ENSMUSP00000118469
Gene: ENSMUSG00000037640

Domain	Start	End	E-Value	Type
KRAB	14	75	8.48e-36	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000136373

SMART Domains

Protein: ENSMUSP00000117049
Gene: ENSMUSG00000037640

Domain	Start	End	E-Value	Type
KRAB	14	55	3.2e-13	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000167955
AA Change: R632H

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000132607
Gene: ENSMUSG00000037640
AA Change: R632H

Domain	Start	End	E-Value	Type
KRAB	14	75	8.48e-36	SMART
ZnF_C2H2	173	195	2.67e-1	SMART
ZnF_C2H2	201	223	2.09e-3	SMART
ZnF_C2H2	229	251	1.18e-2	SMART
ZnF_C2H2	257	279	2.24e-3	SMART
ZnF_C2H2	285	307	2.65e-5	SMART
ZnF_C2H2	313	335	5.5e-3	SMART
ZnF_C2H2	341	363	3.89e-3	SMART
ZnF_C2H2	369	391	6.32e-3	SMART
ZnF_C2H2	397	419	5.14e-3	SMART
ZnF_C2H2	425	447	7.9e-4	SMART
ZnF_C2H2	453	475	1.67e-2	SMART
ZnF_C2H2	481	503	4.4e-2	SMART
ZnF_C2H2	509	531	4.24e-4	SMART
ZnF_C2H2	537	559	5.21e-4	SMART
ZnF_C2H2	565	587	5.14e-3	SMART
ZnF_C2H2	593	615	3.89e-3	SMART
ZnF_C2H2	621	643	1.95e-3	SMART
ZnF_C2H2	649	671	6.67e-2	SMART
ZnF_C2H2	677	699	8.34e-3	SMART

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.8%
20x: 93.1%

Validation Efficiency

97% (60/62)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aatk	T	C	11: 119,909,696 (GRCm39)	D23G	probably benign	Het
Abca14	T	C	7: 119,924,325 (GRCm39)	I1659T	probably benign	Het
Ankdd1a	C	T	9: 65,409,494 (GRCm39)	V481M	probably benign	Het
Ankfy1	G	A	11: 72,621,308 (GRCm39)	R198Q	possibly damaging	Het
Cfap161	T	A	7: 83,443,230 (GRCm39)	R20*	probably null	Het
Cops7a	A	T	6: 124,937,139 (GRCm39)	V184E	probably damaging	Het
Cpa3	T	C	3: 20,293,739 (GRCm39)	E83G	possibly damaging	Het
Crls1	C	T	2: 132,703,153 (GRCm39)	S201L	probably benign	Het
Cyp4f39	C	A	17: 32,700,791 (GRCm39)	S153R	probably damaging	Het
Ddx54	T	A	5: 120,759,843 (GRCm39)	I410N	probably damaging	Het
Dido1	T	A	2: 180,302,274 (GRCm39)	T1877S	probably benign	Het
Dip2c	A	G	13: 9,673,796 (GRCm39)	S1079G	probably damaging	Het
Dnhd1	G	A	7: 105,327,093 (GRCm39)	V681I	probably benign	Het
Dst	A	G	1: 34,247,809 (GRCm39)		probably null	Het
Eya2	A	G	2: 165,605,681 (GRCm39)	T362A	probably benign	Het
Garre1	A	G	7: 33,957,055 (GRCm39)		probably null	Het
Hgs	G	A	11: 120,360,481 (GRCm39)	V60M	probably damaging	Het
Inpp4b	A	G	8: 82,571,343 (GRCm39)		probably null	Het
Iqub	T	A	6: 24,449,744 (GRCm39)	N707I	probably damaging	Het
Kdr	C	A	5: 76,129,501 (GRCm39)	A129S	probably benign	Het
Lhcgr	A	T	17: 89,049,801 (GRCm39)	M575K	probably damaging	Het
Lsamp	G	T	16: 41,988,528 (GRCm39)		probably benign	Het
Mcm5	T	C	8: 75,839,230 (GRCm39)	V161A	probably benign	Het
Mmp14	A	T	14: 54,675,115 (GRCm39)	H249L	probably damaging	Het
Mroh5	A	G	15: 73,662,604 (GRCm39)	S405P	probably damaging	Het
Mroh9	C	A	1: 162,903,873 (GRCm39)	L46F	probably damaging	Het
Mtrr	A	T	13: 68,718,192 (GRCm39)	H357Q	probably damaging	Het
Myrf	G	A	19: 10,206,149 (GRCm39)	P89L	probably benign	Het
Mzb1	C	T	18: 35,781,311 (GRCm39)		probably null	Het
Naip6	A	G	13: 100,452,516 (GRCm39)	S182P	probably damaging	Het
Nmur2	A	T	11: 55,920,417 (GRCm39)	F276Y	probably damaging	Het
Nudt12	G	T	17: 59,318,140 (GRCm39)	S35Y	probably benign	Het
Or51h5	T	A	7: 102,577,585 (GRCm39)	V250E	probably damaging	Het
Or56b1	T	C	7: 104,284,886 (GRCm39)	S2P	probably benign	Het
Or9m1	A	G	2: 87,733,334 (GRCm39)	S229P	probably damaging	Het
Osbpl1a	T	C	18: 12,889,318 (GRCm39)	I541V	probably benign	Het
Parp4	A	G	14: 56,884,694 (GRCm39)	K1258E	probably benign	Het
Plcxd2	C	G	16: 45,801,022 (GRCm39)	K67N	probably damaging	Het
Pnpla6	A	G	8: 3,586,627 (GRCm39)	T930A	probably benign	Het
Pomt1	G	A	2: 32,138,728 (GRCm39)		probably null	Het
Ppp1r14bl	A	T	1: 23,140,861 (GRCm39)	L151Q	probably benign	Het
Pramel6	A	G	2: 87,340,946 (GRCm39)	Y426C	possibly damaging	Het
Prss27	A	G	17: 24,263,235 (GRCm39)	T83A	probably damaging	Het
Rbm27	T	A	18: 42,466,383 (GRCm39)	V915E	probably damaging	Het
Rnf114	T	A	2: 167,345,408 (GRCm39)	D10E	probably benign	Het
Sbk1	A	G	7: 125,890,350 (GRCm39)	E121G	probably damaging	Het
Senp6	A	T	9: 80,000,907 (GRCm39)	R39*	probably null	Het
Sergef	A	T	7: 46,283,250 (GRCm39)	I94N	probably benign	Het
Slc30a9	C	T	5: 67,485,867 (GRCm39)	R183W	probably benign	Het
Smurf1	C	T	5: 144,826,602 (GRCm39)	R414H	possibly damaging	Het
Sptb	A	T	12: 76,653,166 (GRCm39)	W1566R	probably damaging	Het
Tenm2	T	C	11: 35,901,334 (GRCm39)		probably null	Het
Tnni1	T	C	1: 135,733,304 (GRCm39)	V42A	probably benign	Het
Tnxb	A	G	17: 34,938,513 (GRCm39)	Y3098C	probably damaging	Het
Ubald2	T	C	11: 116,325,400 (GRCm39)	F46L	probably benign	Het
Ubqln5	G	A	7: 103,777,465 (GRCm39)	S453F	probably damaging	Het
Ubr3	A	T	2: 69,809,773 (GRCm39)	R1248*	probably null	Het
Utp20	A	G	10: 88,604,780 (GRCm39)	V1705A	probably benign	Het
Zfp638	A	G	6: 83,942,560 (GRCm39)	Y957C	probably damaging	Het
Zfp825	A	T	13: 74,629,029 (GRCm39)	S162R	possibly damaging	Het
Zfp831	A	C	2: 174,545,960 (GRCm39)	K1355T	probably benign	Het

Other mutations in Zfp60

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03353:Zfp60	APN	7	27,447,759 (GRCm39)	nonsense	probably null
PIT4494001:Zfp60	UTSW	7	27,448,126 (GRCm39)	missense	probably damaging	1.00
R1281:Zfp60	UTSW	7	27,437,852 (GRCm39)	missense	probably damaging	1.00
R1643:Zfp60	UTSW	7	27,436,400 (GRCm39)	missense	probably damaging	0.98
R1883:Zfp60	UTSW	7	27,449,435 (GRCm39)	missense	probably benign	0.00
R1930:Zfp60	UTSW	7	27,436,382 (GRCm39)	start codon destroyed	probably null	1.00
R3623:Zfp60	UTSW	7	27,448,753 (GRCm39)	missense	probably benign	0.01
R3624:Zfp60	UTSW	7	27,448,753 (GRCm39)	missense	probably benign	0.01
R3875:Zfp60	UTSW	7	27,449,006 (GRCm39)	missense	probably damaging	1.00
R5296:Zfp60	UTSW	7	27,437,955 (GRCm39)	intron	probably benign
R5491:Zfp60	UTSW	7	27,447,940 (GRCm39)	splice site	probably null
R5724:Zfp60	UTSW	7	27,447,758 (GRCm39)	missense	probably benign
R6134:Zfp60	UTSW	7	27,449,323 (GRCm39)	missense	probably benign	0.01
R6312:Zfp60	UTSW	7	27,448,201 (GRCm39)	missense	probably damaging	0.99
R6649:Zfp60	UTSW	7	27,448,151 (GRCm39)	missense	probably benign	0.00
R6653:Zfp60	UTSW	7	27,448,151 (GRCm39)	missense	probably benign	0.00
R7041:Zfp60	UTSW	7	27,448,451 (GRCm39)	missense	probably benign	0.05
R7166:Zfp60	UTSW	7	27,448,937 (GRCm39)	missense	possibly damaging	0.82
R7185:Zfp60	UTSW	7	27,437,830 (GRCm39)	missense	probably damaging	1.00
R7334:Zfp60	UTSW	7	27,448,444 (GRCm39)	missense	probably damaging	1.00
R7560:Zfp60	UTSW	7	27,448,696 (GRCm39)	missense	probably damaging	1.00
R7560:Zfp60	UTSW	7	27,448,561 (GRCm39)	missense	probably damaging	0.99
R7561:Zfp60	UTSW	7	27,447,955 (GRCm39)	missense	probably damaging	1.00
R7673:Zfp60	UTSW	7	27,447,740 (GRCm39)	missense	probably benign	0.00
R7961:Zfp60	UTSW	7	27,447,881 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- ACTGTTCTGGCTCAGCTCAC -3'
(R):5'- CCACCTTTGATTTTCAACTGAAGGTC -3'

Sequencing Primer
(F):5'- GCTCAGCTCACACGGCAC -3'
(R):5'- ACTCTGATGTACTTTAAGGTCTCGAC -3'

Posted On

2018-05-21