Mutagenetix > Incidental Mutation

Incidental Mutation 'R6463:Rdh7'

517697

Institutional Source

Beutler Lab

Gene Symbol

Rdh7

Ensembl Gene

ENSMUSG00000040134

Gene Name

retinol dehydrogenase 7

Synonyms

CRAD2

MMRRC Submission

045324-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.079) question?

Stock #

R6463 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

127719897-127724686 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 127721650 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glycine at position 209 (R209G)

Ref Sequence

ENSEMBL: ENSMUSP00000039252 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047199]

AlphaFold

O88451

Predicted Effect

probably benign
Transcript: ENSMUST00000047199
AA Change: R209G

PolyPhen 2 Score 0.329 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000039252
Gene: ENSMUSG00000040134
AA Change: R209G

Domain	Start	End	E-Value	Type
signal peptide	1	17	N/A	INTRINSIC
Pfam:adh_short	30	220	1.2e-40	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130374

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 97.8%
20x: 92.4%

Validation Efficiency

100% (51/51)

Allele List at MGI

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700009N14Rik	A	T	4: 39,450,938 (GRCm39)	H48L	probably damaging	Het
Aifm3	A	G	16: 17,318,653 (GRCm39)	I185V	probably benign	Het
Asb7	A	T	7: 66,309,984 (GRCm39)	D77E	probably damaging	Het
Cacna1i	T	C	15: 80,239,959 (GRCm39)	I336T	probably damaging	Het
Cadps2	A	T	6: 23,323,333 (GRCm39)	L1016*	probably null	Het
Cep63	C	A	9: 102,473,354 (GRCm39)	M504I	probably benign	Het
Chpf2	G	T	5: 24,794,524 (GRCm39)	L231F	probably damaging	Het
Cnot10	T	C	9: 114,454,970 (GRCm39)	Y221C	probably damaging	Het
Col3a1	G	A	1: 45,381,365 (GRCm39)		probably benign	Het
Csl	T	C	10: 99,594,960 (GRCm39)	D35G	probably damaging	Het
Csmd3	T	C	15: 47,539,875 (GRCm39)	Y2286C	probably damaging	Het
Dbt	A	G	3: 116,333,409 (GRCm39)	E293G	possibly damaging	Het
Ddx31	T	A	2: 28,737,525 (GRCm39)		probably null	Het
Dnm1	T	C	2: 32,199,603 (GRCm39)		probably benign	Het
Elfn1	A	G	5: 139,958,040 (GRCm39)	Y348C	probably damaging	Het
Enpp5	G	A	17: 44,396,155 (GRCm39)	G356S	probably damaging	Het
Epha5	T	A	5: 84,254,569 (GRCm39)	I657F	probably damaging	Het
Fbp1	A	G	13: 63,012,824 (GRCm39)	F123S	possibly damaging	Het
Hkdc1	T	C	10: 62,229,481 (GRCm39)	N732S	probably damaging	Het
Itfg1	A	G	8: 86,462,780 (GRCm39)	S448P	probably benign	Het
Itprid1	A	G	6: 55,945,663 (GRCm39)	R795G	probably benign	Het
Izumo2	A	G	7: 44,358,498 (GRCm39)	K84R	probably benign	Het
Kbtbd3	A	G	9: 4,316,921 (GRCm39)	Y24C	probably benign	Het
Kif1b	T	C	4: 149,277,053 (GRCm39)	M1337V	probably benign	Het
Mdn1	T	C	4: 32,773,308 (GRCm39)	L5489P	probably damaging	Het
Mettl2	G	A	11: 105,023,407 (GRCm39)		probably null	Het
Mtr	T	C	13: 12,231,752 (GRCm39)	T651A	probably benign	Het
Naglu	A	G	11: 100,968,177 (GRCm39)		probably null	Het
Nkx6-1	G	T	5: 101,807,342 (GRCm39)	H347N	probably damaging	Het
Ntpcr	A	G	8: 126,462,843 (GRCm39)	E20G	probably benign	Het
Oas2	T	C	5: 120,873,046 (GRCm39)	R670G	probably null	Het
Or10h1	G	A	17: 33,418,612 (GRCm39)	V197I	probably benign	Het
Or2ag16	C	G	7: 106,352,008 (GRCm39)	E196Q	probably benign	Het
Or4p8	T	C	2: 88,727,462 (GRCm39)	I160V	probably benign	Het
Phldb2	A	C	16: 45,595,356 (GRCm39)	V902G	probably benign	Het
Slc13a3	A	C	2: 165,287,573 (GRCm39)	L127R	probably damaging	Het
Slc6a20b	T	A	9: 123,434,014 (GRCm39)	I275F	possibly damaging	Het
St3gal1	A	G	15: 66,983,195 (GRCm39)	V187A	possibly damaging	Het
Tmx4	T	C	2: 134,462,559 (GRCm39)	Y124C	probably damaging	Het
Trh	A	T	6: 92,219,824 (GRCm39)	M164K	possibly damaging	Het
Trhr	A	G	15: 44,060,981 (GRCm39)	N167S	probably benign	Het
Ttll7	G	A	3: 146,637,337 (GRCm39)	R490Q	possibly damaging	Het
Uck1	T	C	2: 32,148,667 (GRCm39)	N100S	probably benign	Het
Ucp3	A	T	7: 100,129,476 (GRCm39)	T104S	probably benign	Het
Vmn2r28	T	A	7: 5,489,435 (GRCm39)	H468L	probably benign	Het
Xaf1	G	A	11: 72,199,464 (GRCm39)	R67H	probably benign	Het
Ypel4	T	C	2: 84,567,087 (GRCm39)		probably benign	Het
Zfp687	A	G	3: 94,918,095 (GRCm39)	I559T	probably damaging	Het

Other mutations in Rdh7

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02098:Rdh7	APN	10	127,720,607 (GRCm39)	missense	probably benign
IGL02727:Rdh7	APN	10	127,723,487 (GRCm39)	missense	probably damaging	1.00
IGL03211:Rdh7	APN	10	127,723,492 (GRCm39)	missense	probably benign	0.01
R0315:Rdh7	UTSW	10	127,724,265 (GRCm39)	missense	possibly damaging	0.67
R0394:Rdh7	UTSW	10	127,720,539 (GRCm39)	missense	probably benign	0.03
R0669:Rdh7	UTSW	10	127,720,598 (GRCm39)	missense	probably benign
R1662:Rdh7	UTSW	10	127,724,481 (GRCm39)	start codon destroyed	probably null	1.00
R1735:Rdh7	UTSW	10	127,720,454 (GRCm39)	missense	probably benign	0.00
R1778:Rdh7	UTSW	10	127,720,590 (GRCm39)	missense	probably benign	0.03
R2191:Rdh7	UTSW	10	127,724,467 (GRCm39)	missense	probably benign	0.04
R2268:Rdh7	UTSW	10	127,720,530 (GRCm39)	missense	probably benign	0.01
R4240:Rdh7	UTSW	10	127,721,671 (GRCm39)	missense	probably benign	0.00
R4817:Rdh7	UTSW	10	127,721,631 (GRCm39)	missense	probably benign
R4887:Rdh7	UTSW	10	127,721,590 (GRCm39)	missense	probably benign	0.00
R4970:Rdh7	UTSW	10	127,721,691 (GRCm39)	missense	probably benign	0.00
R6615:Rdh7	UTSW	10	127,720,491 (GRCm39)	missense	probably damaging	0.98
R6835:Rdh7	UTSW	10	127,720,608 (GRCm39)	missense	probably benign
R6854:Rdh7	UTSW	10	127,724,250 (GRCm39)	missense	probably benign	0.35
R7172:Rdh7	UTSW	10	127,724,218 (GRCm39)	missense	possibly damaging	0.94
R8129:Rdh7	UTSW	10	127,723,370 (GRCm39)	missense	probably benign	0.16
R8186:Rdh7	UTSW	10	127,723,284 (GRCm39)	critical splice donor site	probably null
R8430:Rdh7	UTSW	10	127,723,495 (GRCm39)	missense	probably benign	0.00
R8888:Rdh7	UTSW	10	127,724,430 (GRCm39)	missense	probably benign
R8895:Rdh7	UTSW	10	127,724,430 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- AGACTTTGTACCAGAAAAGCACAG -3'
(R):5'- AGAGATGACACCCTTGCCAC -3'

Sequencing Primer
(F):5'- TACCAGAAAAGCACAGGAGGCTC -3'
(R):5'- ATCAGCTGCACATCCCAG -3'

Posted On

2018-05-21