Incidental Mutation 'R6463:Mettl2'
ID 517700
Institutional Source Beutler Lab
Gene Symbol Mettl2
Ensembl Gene ENSMUSG00000020691
Gene Name methyltransferase 2, methylcytidine
Synonyms PSENIP1, C130031G21Rik, 2810438F06Rik, D11Ertd768e
MMRRC Submission 045324-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.142) question?
Stock # R6463 (G1)
Quality Score 204.009
Status Validated
Chromosome 11
Chromosomal Location 105017251-105031220 bp(+) (GRCm39)
Type of Mutation critical splice donor site (1 bp from exon)
DNA Base Change (assembly) G to A at 105023407 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000021030 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000021030]
AlphaFold Q8BMK1
Predicted Effect probably null
Transcript: ENSMUST00000021030
SMART Domains Protein: ENSMUSP00000021030
Gene: ENSMUSG00000020691

DomainStartEndE-ValueType
Pfam:Methyltransf_23 150 337 1.2e-18 PFAM
Pfam:Ubie_methyltran 164 300 1.2e-8 PFAM
Pfam:MTS 166 291 4.3e-6 PFAM
Pfam:Methyltransf_31 171 331 1.6e-14 PFAM
Pfam:Methyltransf_18 173 286 2e-7 PFAM
Pfam:Methyltransf_25 177 279 7.6e-12 PFAM
Pfam:Methyltransf_12 178 281 1.1e-18 PFAM
Pfam:Methyltransf_11 178 283 5.7e-14 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000129012
Predicted Effect noncoding transcript
Transcript: ENSMUST00000132185
Predicted Effect noncoding transcript
Transcript: ENSMUST00000136214
Predicted Effect noncoding transcript
Transcript: ENSMUST00000155460
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 97.8%
  • 20x: 92.4%
Validation Efficiency 100% (51/51)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced 3-methylcytidine (m3C) methyltransferases modification of tRNA. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 48 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700009N14Rik A T 4: 39,450,938 (GRCm39) H48L probably damaging Het
Aifm3 A G 16: 17,318,653 (GRCm39) I185V probably benign Het
Asb7 A T 7: 66,309,984 (GRCm39) D77E probably damaging Het
Cacna1i T C 15: 80,239,959 (GRCm39) I336T probably damaging Het
Cadps2 A T 6: 23,323,333 (GRCm39) L1016* probably null Het
Cep63 C A 9: 102,473,354 (GRCm39) M504I probably benign Het
Chpf2 G T 5: 24,794,524 (GRCm39) L231F probably damaging Het
Cnot10 T C 9: 114,454,970 (GRCm39) Y221C probably damaging Het
Col3a1 G A 1: 45,381,365 (GRCm39) probably benign Het
Csl T C 10: 99,594,960 (GRCm39) D35G probably damaging Het
Csmd3 T C 15: 47,539,875 (GRCm39) Y2286C probably damaging Het
Dbt A G 3: 116,333,409 (GRCm39) E293G possibly damaging Het
Ddx31 T A 2: 28,737,525 (GRCm39) probably null Het
Dnm1 T C 2: 32,199,603 (GRCm39) probably benign Het
Elfn1 A G 5: 139,958,040 (GRCm39) Y348C probably damaging Het
Enpp5 G A 17: 44,396,155 (GRCm39) G356S probably damaging Het
Epha5 T A 5: 84,254,569 (GRCm39) I657F probably damaging Het
Fbp1 A G 13: 63,012,824 (GRCm39) F123S possibly damaging Het
Hkdc1 T C 10: 62,229,481 (GRCm39) N732S probably damaging Het
Itfg1 A G 8: 86,462,780 (GRCm39) S448P probably benign Het
Itprid1 A G 6: 55,945,663 (GRCm39) R795G probably benign Het
Izumo2 A G 7: 44,358,498 (GRCm39) K84R probably benign Het
Kbtbd3 A G 9: 4,316,921 (GRCm39) Y24C probably benign Het
Kif1b T C 4: 149,277,053 (GRCm39) M1337V probably benign Het
Mdn1 T C 4: 32,773,308 (GRCm39) L5489P probably damaging Het
Mtr T C 13: 12,231,752 (GRCm39) T651A probably benign Het
Naglu A G 11: 100,968,177 (GRCm39) probably null Het
Nkx6-1 G T 5: 101,807,342 (GRCm39) H347N probably damaging Het
Ntpcr A G 8: 126,462,843 (GRCm39) E20G probably benign Het
Oas2 T C 5: 120,873,046 (GRCm39) R670G probably null Het
Or10h1 G A 17: 33,418,612 (GRCm39) V197I probably benign Het
Or2ag16 C G 7: 106,352,008 (GRCm39) E196Q probably benign Het
Or4p8 T C 2: 88,727,462 (GRCm39) I160V probably benign Het
Phldb2 A C 16: 45,595,356 (GRCm39) V902G probably benign Het
Rdh7 T C 10: 127,721,650 (GRCm39) R209G probably benign Het
Slc13a3 A C 2: 165,287,573 (GRCm39) L127R probably damaging Het
Slc6a20b T A 9: 123,434,014 (GRCm39) I275F possibly damaging Het
St3gal1 A G 15: 66,983,195 (GRCm39) V187A possibly damaging Het
Tmx4 T C 2: 134,462,559 (GRCm39) Y124C probably damaging Het
Trh A T 6: 92,219,824 (GRCm39) M164K possibly damaging Het
Trhr A G 15: 44,060,981 (GRCm39) N167S probably benign Het
Ttll7 G A 3: 146,637,337 (GRCm39) R490Q possibly damaging Het
Uck1 T C 2: 32,148,667 (GRCm39) N100S probably benign Het
Ucp3 A T 7: 100,129,476 (GRCm39) T104S probably benign Het
Vmn2r28 T A 7: 5,489,435 (GRCm39) H468L probably benign Het
Xaf1 G A 11: 72,199,464 (GRCm39) R67H probably benign Het
Ypel4 T C 2: 84,567,087 (GRCm39) probably benign Het
Zfp687 A G 3: 94,918,095 (GRCm39) I559T probably damaging Het
Other mutations in Mettl2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01432:Mettl2 APN 11 105,017,348 (GRCm39) missense probably benign 0.00
IGL01565:Mettl2 APN 11 105,017,364 (GRCm39) missense probably benign 0.00
R0071:Mettl2 UTSW 11 105,022,468 (GRCm39) splice site probably benign
R0726:Mettl2 UTSW 11 105,017,670 (GRCm39) missense probably benign
R0990:Mettl2 UTSW 11 105,028,570 (GRCm39) nonsense probably null
R1318:Mettl2 UTSW 11 105,028,597 (GRCm39) nonsense probably null
R1699:Mettl2 UTSW 11 105,030,544 (GRCm39) missense probably benign 0.02
R1885:Mettl2 UTSW 11 105,022,446 (GRCm39) missense possibly damaging 0.94
R1907:Mettl2 UTSW 11 105,017,666 (GRCm39) missense probably benign 0.00
R3706:Mettl2 UTSW 11 105,030,552 (GRCm39) missense probably benign
R4396:Mettl2 UTSW 11 105,017,604 (GRCm39) missense probably damaging 1.00
R4774:Mettl2 UTSW 11 105,017,436 (GRCm39) splice site probably null
R4876:Mettl2 UTSW 11 105,019,894 (GRCm39) missense probably damaging 0.99
R4955:Mettl2 UTSW 11 105,028,605 (GRCm39) missense possibly damaging 0.92
R7058:Mettl2 UTSW 11 105,019,719 (GRCm39) missense probably benign
R7387:Mettl2 UTSW 11 105,023,364 (GRCm39) missense probably benign 0.42
R7934:Mettl2 UTSW 11 105,019,773 (GRCm39) missense probably benign 0.00
R8181:Mettl2 UTSW 11 105,019,866 (GRCm39) missense probably benign 0.11
R8546:Mettl2 UTSW 11 105,022,399 (GRCm39) missense probably benign 0.06
R8977:Mettl2 UTSW 11 105,019,791 (GRCm39) missense probably benign 0.09
R9085:Mettl2 UTSW 11 105,021,274 (GRCm39) missense possibly damaging 0.82
X0025:Mettl2 UTSW 11 105,030,539 (GRCm39) missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- TGGCATTTAAGACAGGATAAGCC -3'
(R):5'- TCCCAGGGTTTTCAGACTTAGC -3'

Sequencing Primer
(F):5'- GTGTTCATGTCTTCTGACCTATTTG -3'
(R):5'- AGGGTTTTCAGACTTAGCTTCCAAC -3'
Posted On 2018-05-21