Mutagenetix > Incidental Mutation

Incidental Mutation 'R6459:Slc10a2'

517834

Institutional Source

Beutler Lab

Gene Symbol

Slc10a2

Ensembl Gene

ENSMUSG00000023073

Gene Name

solute carrier family 10, member 2

Synonyms

9130221J18Rik, ASBT

MMRRC Submission

044594-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6459 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

5133219-5155287 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to C at 5148581 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000023835 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023835]

AlphaFold

P70172

Predicted Effect

probably null
Transcript: ENSMUST00000023835

SMART Domains

Protein: ENSMUSP00000023835
Gene: ENSMUSG00000023073

Domain	Start	End	E-Value	Type
Pfam:SBF	39	220	1e-47	PFAM
transmembrane domain	226	248	N/A	INTRINSIC
transmembrane domain	286	308	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 97.9%
20x: 93.6%

Validation Efficiency

98% (52/53)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a sodium/bile acid cotransporter. This transporter is the primary mechanism for uptake of intestinal bile acids by apical cells in the distal ileum. Bile acids are the catabolic product of cholesterol metabolism, so this protein is also critical for cholesterol homeostasis. Mutations in this gene cause primary bile acid malabsorption (PBAM); muatations in this gene may also be associated with other diseases of the liver and intestines, such as familial hypertriglyceridemia (FHTG). [provided by RefSeq, Mar 2010]
PHENOTYPE: Mice homozygous for disruptions in this gene are essentially indistinguishable from wild-type in terms of survival, gross appearance and behavior. However, they do have defects in lipid absorption from the intestine. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abr	C	A	11: 76,315,815 (GRCm39)	R583L	probably damaging	Het
Acss1	A	G	2: 150,509,840 (GRCm39)	I93T	probably damaging	Het
Ank3	C	T	10: 69,827,577 (GRCm39)		probably benign	Het
Aoah	A	G	13: 21,184,112 (GRCm39)	Y392C	probably damaging	Het
Atl3	A	T	19: 7,498,163 (GRCm39)	E186D	probably benign	Het
Atp4a	A	G	7: 30,411,887 (GRCm39)	K41E	probably benign	Het
Atp9a	G	A	2: 168,509,933 (GRCm39)	P500L	probably damaging	Het
Ccdc88b	A	T	19: 6,832,246 (GRCm39)	V363D	possibly damaging	Het
Cftr	T	C	6: 18,258,235 (GRCm39)	V532A	probably damaging	Het
Cldn13	T	C	5: 134,943,769 (GRCm39)	T139A	possibly damaging	Het
Cnksr3	T	C	10: 7,076,820 (GRCm39)	Y124C	probably benign	Het
Cyb5r2	T	C	7: 107,352,462 (GRCm39)	K161E	possibly damaging	Het
Epop	T	C	11: 97,519,333 (GRCm39)	S259G	possibly damaging	Het
Fhl2	G	A	1: 43,162,813 (GRCm39)	T234I	possibly damaging	Het
Fnip2	T	C	3: 79,388,941 (GRCm39)	T567A	possibly damaging	Het
Frmd4b	A	G	6: 97,464,601 (GRCm39)	C39R	probably damaging	Het
Grhl3	T	C	4: 135,284,744 (GRCm39)	N116S	possibly damaging	Het
Igkv14-111	A	T	6: 68,233,725 (GRCm39)	R75S	probably benign	Het
Il16	A	T	7: 83,371,529 (GRCm39)	D92E	probably damaging	Het
Il16	C	A	7: 83,371,536 (GRCm39)	G90V	probably damaging	Het
Ipo11	T	C	13: 107,002,277 (GRCm39)		probably null	Het
Kng2	A	G	16: 22,830,865 (GRCm39)	I148T	probably damaging	Het
Lrrc41	T	C	4: 115,945,977 (GRCm39)	S231P	possibly damaging	Het
Maneal	C	T	4: 124,750,635 (GRCm39)	V374I	possibly damaging	Het
Mgat4c	T	A	10: 102,220,988 (GRCm39)	L90Q	probably damaging	Het
Mrps28	A	G	3: 8,965,040 (GRCm39)		probably null	Het
Ncapd3	A	G	9: 26,963,051 (GRCm39)	D452G	probably benign	Het
Nefh	T	C	11: 4,889,551 (GRCm39)	T1023A	unknown	Het
Nipa1	A	G	7: 55,629,354 (GRCm39)	V253A	probably benign	Het
Or5ac17	C	T	16: 59,036,383 (GRCm39)	V198M	probably benign	Het
Or5b97	G	T	19: 12,878,369 (GRCm39)	F258L	possibly damaging	Het
Or5m11	G	T	2: 85,781,862 (GRCm39)	G152C	probably damaging	Het
Or8d23	A	G	9: 38,841,961 (GRCm39)	S165G	probably benign	Het
Or8k41	T	A	2: 86,313,573 (GRCm39)	H171L	probably benign	Het
Pak1	A	G	7: 97,557,088 (GRCm39)	D495G	probably benign	Het
Pcm1	G	A	8: 41,714,073 (GRCm39)	R213H	probably damaging	Het
Prg4	T	C	1: 150,330,052 (GRCm39)		probably benign	Het
Proser1	C	T	3: 53,385,750 (GRCm39)	T544M	possibly damaging	Het
Rftn1	T	C	17: 50,354,334 (GRCm39)	M343V	probably benign	Het
Ryr1	T	C	7: 28,715,079 (GRCm39)	I4656V	probably benign	Het
Scg2	T	A	1: 79,414,007 (GRCm39)	N239Y	probably damaging	Het
Sec16a	C	A	2: 26,313,512 (GRCm39)	M1949I	probably benign	Het
Sipa1l2	A	G	8: 126,171,223 (GRCm39)		probably null	Het
Slc25a16	C	T	10: 62,773,256 (GRCm39)	Q164*	probably null	Het
Specc1l	T	C	10: 75,082,001 (GRCm39)	Y483H	probably damaging	Het
Ston1	T	C	17: 88,943,896 (GRCm39)	V434A	probably benign	Het
Tarbp2	A	G	15: 102,426,914 (GRCm39)		probably benign	Het
Trappc8	C	T	18: 20,969,925 (GRCm39)	V1022M	probably benign	Het
Tsen54	T	C	11: 115,712,506 (GRCm39)	V269A	probably damaging	Het
Vps13a	A	T	19: 16,641,382 (GRCm39)	M78K	possibly damaging	Het
Vwa5b2	A	G	16: 20,413,429 (GRCm39)	T215A	probably damaging	Het
Zc3h7a	A	G	16: 10,971,025 (GRCm39)	Y335H	probably damaging	Het
Zfp994	T	A	17: 22,419,527 (GRCm39)	Q474L	possibly damaging	Het

Other mutations in Slc10a2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00504:Slc10a2	APN	8	5,141,667 (GRCm39)	missense	probably benign	0.00
IGL00504:Slc10a2	APN	8	5,141,668 (GRCm39)	missense	probably damaging	0.96
IGL00596:Slc10a2	APN	8	5,141,680 (GRCm39)	missense	probably benign	0.00
IGL01472:Slc10a2	APN	8	5,141,652 (GRCm39)	missense	probably damaging	1.00
IGL02679:Slc10a2	APN	8	5,148,499 (GRCm39)	missense	probably damaging	1.00
gall	UTSW	8	5,141,621 (GRCm39)	critical splice donor site	probably null
R0560:Slc10a2	UTSW	8	5,139,092 (GRCm39)	missense	probably benign	0.02
R0629:Slc10a2	UTSW	8	5,148,562 (GRCm39)	missense	probably benign	0.30
R0743:Slc10a2	UTSW	8	5,139,132 (GRCm39)	missense	probably damaging	0.99
R0970:Slc10a2	UTSW	8	5,155,115 (GRCm39)	missense	probably benign	0.00
R1033:Slc10a2	UTSW	8	5,154,889 (GRCm39)	missense	probably damaging	0.99
R1557:Slc10a2	UTSW	8	5,141,755 (GRCm39)	missense	probably damaging	1.00
R1808:Slc10a2	UTSW	8	5,154,856 (GRCm39)	missense	probably damaging	0.96
R3620:Slc10a2	UTSW	8	5,154,909 (GRCm39)	missense	probably damaging	0.99
R4084:Slc10a2	UTSW	8	5,139,126 (GRCm39)	missense	possibly damaging	0.71
R4112:Slc10a2	UTSW	8	5,155,135 (GRCm39)	missense	probably benign
R5693:Slc10a2	UTSW	8	5,155,128 (GRCm39)	missense	probably damaging	1.00
R6294:Slc10a2	UTSW	8	5,141,621 (GRCm39)	critical splice donor site	probably null
R7442:Slc10a2	UTSW	8	5,139,086 (GRCm39)	missense	possibly damaging	0.80
R8479:Slc10a2	UTSW	8	5,148,443 (GRCm39)	splice site	probably null
R8822:Slc10a2	UTSW	8	5,139,149 (GRCm39)	missense	probably damaging	1.00
R9075:Slc10a2	UTSW	8	5,155,267 (GRCm39)	start gained	probably benign
R9255:Slc10a2	UTSW	8	5,148,565 (GRCm39)	missense	probably benign	0.00
R9493:Slc10a2	UTSW	8	5,139,047 (GRCm39)	missense
Z1177:Slc10a2	UTSW	8	5,148,448 (GRCm39)	missense	probably damaging	1.00
Z1188:Slc10a2	UTSW	8	5,155,063 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- AGCAGGGACTAAGCATATAACTTG -3'
(R):5'- AACCATCATTGACTGCCCTC -3'

Sequencing Primer
(F):5'- CTTGAGGGTAATAAGAAGTATCTTGC -3'
(R):5'- GCTAGTTGAGTCTGATGC -3'

Posted On

2018-05-21