Incidental Mutation 'R6444:Trim56'
ID |
519123 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Trim56
|
Ensembl Gene |
ENSMUSG00000043279 |
Gene Name |
tripartite motif-containing 56 |
Synonyms |
A130009K11Rik, RNF109, LOC384309 |
MMRRC Submission |
044582-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R6444 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
5 |
Chromosomal Location |
137140140-137145313 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 137141470 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Valine to Alanine
at position 682
(V682A)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000058109
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000054384]
[ENSMUST00000152207]
|
AlphaFold |
no structure available at present |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000054384
AA Change: V682A
PolyPhen 2
Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
|
SMART Domains |
Protein: ENSMUSP00000058109 Gene: ENSMUSG00000043279 AA Change: V682A
Domain | Start | End | E-Value | Type |
RING
|
21 |
59 |
9.09e-8 |
SMART |
low complexity region
|
118 |
133 |
N/A |
INTRINSIC |
Pfam:zf-B_box
|
164 |
205 |
1.9e-7 |
PFAM |
coiled coil region
|
257 |
291 |
N/A |
INTRINSIC |
low complexity region
|
302 |
309 |
N/A |
INTRINSIC |
low complexity region
|
381 |
399 |
N/A |
INTRINSIC |
low complexity region
|
432 |
447 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000152207
|
SMART Domains |
Protein: ENSMUSP00000117874 Gene: ENSMUSG00000043279
Domain | Start | End | E-Value | Type |
RING
|
21 |
59 |
9.09e-8 |
SMART |
low complexity region
|
118 |
133 |
N/A |
INTRINSIC |
Pfam:zf-B_box
|
164 |
205 |
2.4e-9 |
PFAM |
|
Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 98.1%
- 20x: 94.4%
|
Validation Efficiency |
100% (37/37) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 36 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
A430033K04Rik |
ACAGAGCAGTGCCTACCAG |
ACAG |
5: 138,637,831 (GRCm39) |
|
probably benign |
Het |
Bcas2 |
T |
A |
3: 103,079,362 (GRCm39) |
|
probably null |
Het |
Camk1d |
A |
T |
2: 5,317,956 (GRCm39) |
I233N |
probably damaging |
Het |
Chd2 |
T |
C |
7: 73,150,785 (GRCm39) |
|
probably null |
Het |
Cnot2 |
T |
C |
10: 116,335,260 (GRCm39) |
D246G |
probably benign |
Het |
Cped1 |
A |
C |
6: 21,986,930 (GRCm39) |
I41L |
probably benign |
Het |
Dcdc2c |
A |
G |
12: 28,585,475 (GRCm39) |
V174A |
probably damaging |
Het |
Dscam |
G |
A |
16: 96,420,844 (GRCm39) |
R1681C |
probably damaging |
Het |
Dysf |
G |
A |
6: 84,167,822 (GRCm39) |
V1755M |
probably benign |
Het |
Eif5b |
G |
A |
1: 38,075,292 (GRCm39) |
D590N |
probably damaging |
Het |
Fntb |
A |
G |
12: 76,963,214 (GRCm39) |
Y399C |
probably damaging |
Het |
Galns |
T |
C |
8: 123,338,077 (GRCm39) |
M1V |
probably null |
Het |
Galnt15 |
T |
C |
14: 31,762,368 (GRCm39) |
F199L |
probably damaging |
Het |
Gm8229 |
A |
T |
14: 44,602,928 (GRCm39) |
H38L |
unknown |
Het |
Magel2 |
T |
C |
7: 62,029,747 (GRCm39) |
Y884H |
unknown |
Het |
Miga1 |
A |
T |
3: 151,989,468 (GRCm39) |
V473E |
probably damaging |
Het |
Mrgprx1 |
C |
T |
7: 47,671,562 (GRCm39) |
V62I |
possibly damaging |
Het |
Mybl1 |
G |
A |
1: 9,755,917 (GRCm39) |
P211S |
possibly damaging |
Het |
Myo19 |
A |
G |
11: 84,786,134 (GRCm39) |
H254R |
probably benign |
Het |
Myo1h |
A |
G |
5: 114,453,017 (GRCm39) |
T6A |
possibly damaging |
Het |
Ncbp2 |
CGTCTGGATG |
CG |
16: 31,775,161 (GRCm39) |
|
probably null |
Het |
Or5b119 |
A |
T |
19: 13,456,794 (GRCm39) |
M256K |
possibly damaging |
Het |
Or8g20 |
T |
C |
9: 39,395,614 (GRCm39) |
T309A |
probably benign |
Het |
Psmd12 |
A |
G |
11: 107,377,280 (GRCm39) |
E113G |
possibly damaging |
Het |
Ptpn3 |
T |
C |
4: 57,195,730 (GRCm39) |
D879G |
possibly damaging |
Het |
Rufy3 |
A |
G |
5: 88,785,166 (GRCm39) |
Q414R |
probably damaging |
Het |
Slc14a2 |
A |
G |
18: 78,197,317 (GRCm39) |
I813T |
probably damaging |
Het |
Smok2a |
G |
T |
17: 13,444,500 (GRCm39) |
A26S |
probably benign |
Het |
Spsb3 |
T |
A |
17: 25,110,550 (GRCm39) |
L459Q |
probably damaging |
Het |
Tacc2 |
T |
C |
7: 130,225,142 (GRCm39) |
V609A |
possibly damaging |
Het |
Tmem185b |
C |
A |
1: 119,454,365 (GRCm39) |
A42E |
probably damaging |
Het |
Trim75 |
T |
C |
8: 65,435,488 (GRCm39) |
K321E |
possibly damaging |
Het |
Ttc17 |
A |
C |
2: 94,133,891 (GRCm39) |
M1098R |
possibly damaging |
Het |
Ydjc |
C |
A |
16: 16,965,545 (GRCm39) |
H136Q |
probably damaging |
Het |
Zfp568 |
A |
T |
7: 29,716,682 (GRCm39) |
H193L |
probably benign |
Het |
Znhit1 |
A |
G |
5: 137,011,254 (GRCm39) |
V153A |
probably benign |
Het |
|
Other mutations in Trim56 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01063:Trim56
|
APN |
5 |
137,143,354 (GRCm39) |
missense |
possibly damaging |
0.95 |
IGL02604:Trim56
|
APN |
5 |
137,141,930 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL02653:Trim56
|
APN |
5 |
137,141,760 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03069:Trim56
|
APN |
5 |
137,142,616 (GRCm39) |
missense |
probably damaging |
0.99 |
R0711:Trim56
|
UTSW |
5 |
137,141,846 (GRCm39) |
missense |
probably benign |
0.00 |
R1167:Trim56
|
UTSW |
5 |
137,141,374 (GRCm39) |
missense |
probably damaging |
0.98 |
R1470:Trim56
|
UTSW |
5 |
137,142,017 (GRCm39) |
missense |
probably damaging |
0.99 |
R1470:Trim56
|
UTSW |
5 |
137,142,017 (GRCm39) |
missense |
probably damaging |
0.99 |
R1508:Trim56
|
UTSW |
5 |
137,142,791 (GRCm39) |
missense |
probably benign |
0.00 |
R1791:Trim56
|
UTSW |
5 |
137,143,252 (GRCm39) |
missense |
probably damaging |
1.00 |
R2484:Trim56
|
UTSW |
5 |
137,141,528 (GRCm39) |
missense |
possibly damaging |
0.95 |
R4274:Trim56
|
UTSW |
5 |
137,142,541 (GRCm39) |
missense |
probably damaging |
1.00 |
R4579:Trim56
|
UTSW |
5 |
137,142,918 (GRCm39) |
missense |
possibly damaging |
0.60 |
R4766:Trim56
|
UTSW |
5 |
137,141,579 (GRCm39) |
missense |
probably benign |
0.07 |
R4932:Trim56
|
UTSW |
5 |
137,143,343 (GRCm39) |
missense |
probably damaging |
1.00 |
R5117:Trim56
|
UTSW |
5 |
137,142,832 (GRCm39) |
missense |
probably benign |
0.13 |
R6747:Trim56
|
UTSW |
5 |
137,143,375 (GRCm39) |
missense |
probably damaging |
1.00 |
R6962:Trim56
|
UTSW |
5 |
137,141,501 (GRCm39) |
missense |
probably damaging |
0.97 |
R7115:Trim56
|
UTSW |
5 |
137,142,514 (GRCm39) |
missense |
probably damaging |
0.98 |
R7266:Trim56
|
UTSW |
5 |
137,143,097 (GRCm39) |
missense |
probably damaging |
0.98 |
R7706:Trim56
|
UTSW |
5 |
137,143,510 (GRCm39) |
missense |
probably benign |
0.00 |
R8347:Trim56
|
UTSW |
5 |
137,141,446 (GRCm39) |
missense |
probably damaging |
1.00 |
R8492:Trim56
|
UTSW |
5 |
137,141,783 (GRCm39) |
missense |
probably benign |
|
R8695:Trim56
|
UTSW |
5 |
137,143,429 (GRCm39) |
missense |
probably benign |
0.15 |
R9152:Trim56
|
UTSW |
5 |
137,143,387 (GRCm39) |
missense |
probably benign |
0.06 |
R9166:Trim56
|
UTSW |
5 |
137,142,751 (GRCm39) |
missense |
probably damaging |
1.00 |
R9232:Trim56
|
UTSW |
5 |
137,141,632 (GRCm39) |
missense |
probably damaging |
1.00 |
X0019:Trim56
|
UTSW |
5 |
137,143,064 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- CAAAAGCCGCTTTAGCTGTC -3'
(R):5'- TTATCCCTGGAGGCAAGGCTAG -3'
Sequencing Primer
(F):5'- CGCTTTAGCTGTCAGGAAAC -3'
(R):5'- GGCACTGGTGTTCCTAACCAC -3'
|
Posted On |
2018-05-24 |