Incidental Mutation 'R6545:Vmn2r13'
ID 521090
Institutional Source Beutler Lab
Gene Symbol Vmn2r13
Ensembl Gene ENSMUSG00000091635
Gene Name vomeronasal 2, receptor 13
Synonyms Gm4867
MMRRC Submission 044671-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.081) question?
Stock # R6545 (G1)
Quality Score 225.009
Status Validated
Chromosome 5
Chromosomal Location 109303889-109339973 bp(-) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) A to T at 109304806 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000052977 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000053253] [ENSMUST00000053253]
AlphaFold L7N1X2
Predicted Effect probably null
Transcript: ENSMUST00000053253
SMART Domains Protein: ENSMUSP00000052977
Gene: ENSMUSG00000091635

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
Pfam:ANF_receptor 76 463 2.8e-29 PFAM
Pfam:NCD3G 506 560 1.3e-18 PFAM
Pfam:7tm_3 593 828 1.8e-54 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000053253
SMART Domains Protein: ENSMUSP00000052977
Gene: ENSMUSG00000091635

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
Pfam:ANF_receptor 76 463 2.8e-29 PFAM
Pfam:NCD3G 506 560 1.3e-18 PFAM
Pfam:7tm_3 593 828 1.8e-54 PFAM
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.3%
  • 20x: 97.6%
Validation Efficiency 95% (42/44)
Allele List at MGI
Other mutations in this stock
Total: 46 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ago1 C T 4: 126,348,145 (GRCm39) A58T possibly damaging Het
Ago4 T A 4: 126,405,811 (GRCm39) Q366L probably benign Het
Card10 C A 15: 78,661,010 (GRCm39) G950V probably damaging Het
Ceacam1 A T 7: 25,173,279 (GRCm39) V303D probably damaging Het
Cfap54 C T 10: 92,672,319 (GRCm39) R2917H probably benign Het
Cit A G 5: 115,984,493 (GRCm39) S22G probably null Het
Cog4 A G 8: 111,607,577 (GRCm39) E666G probably damaging Het
Crocc2 A G 1: 93,140,659 (GRCm39) D1103G probably benign Het
Cttnbp2 A T 6: 18,405,278 (GRCm39) probably null Het
Dctn3 T C 4: 41,723,084 (GRCm39) E16G probably damaging Het
Dnah6 A G 6: 73,021,715 (GRCm39) S3536P probably damaging Het
Eef2 T A 10: 81,016,948 (GRCm39) I675N probably damaging Het
Gga3 A G 11: 115,477,995 (GRCm39) F531S possibly damaging Het
Gm19410 A G 8: 36,257,652 (GRCm39) R697G possibly damaging Het
Gm3173 T A 14: 15,728,395 (GRCm39) M18K possibly damaging Het
Gm5800 A T 14: 51,949,419 (GRCm39) S175R possibly damaging Het
Gria2 T C 3: 80,648,451 (GRCm39) K95R probably damaging Het
Gstm6 A G 3: 107,849,681 (GRCm39) I76T probably damaging Het
Harbi1 T G 2: 91,542,640 (GRCm39) Y34D probably damaging Het
Hectd2 C A 19: 36,564,778 (GRCm39) Q20K probably benign Het
Inpp5f C A 7: 128,296,280 (GRCm39) A250D possibly damaging Het
Irf9 T C 14: 55,842,684 (GRCm39) F59L probably damaging Het
Itgam T A 7: 127,707,044 (GRCm39) M625K probably damaging Het
Kcnh5 C T 12: 75,054,432 (GRCm39) R504Q probably damaging Het
Lama2 T C 10: 27,052,793 (GRCm39) T1389A probably benign Het
Lin54 T A 5: 100,632,996 (GRCm39) probably null Het
Mettl23 A G 11: 116,740,042 (GRCm39) D171G possibly damaging Het
Mgll A G 6: 88,802,685 (GRCm39) N296S probably benign Het
Mpv17 T A 5: 31,302,041 (GRCm39) probably benign Het
Myof A T 19: 37,930,745 (GRCm39) M1001K possibly damaging Het
Myom1 A T 17: 71,389,300 (GRCm39) Q850L probably benign Het
Or10ab5 A T 7: 108,245,662 (GRCm39) N40K probably damaging Het
Pias2 A G 18: 77,217,781 (GRCm39) I328V possibly damaging Het
Polh G A 17: 46,493,685 (GRCm39) P311S possibly damaging Het
Prss34 A T 17: 25,517,809 (GRCm39) R61S probably benign Het
Rassf2 A T 2: 131,840,237 (GRCm39) M280K probably damaging Het
Rpsa A G 9: 119,959,323 (GRCm39) H47R probably benign Het
Rtp3 A G 9: 110,815,894 (GRCm39) V219A possibly damaging Het
Smarcc2 T C 10: 128,319,997 (GRCm39) I790T probably benign Het
Stag3 A G 5: 138,296,614 (GRCm39) T491A possibly damaging Het
Svil C T 18: 5,108,621 (GRCm39) H2007Y probably benign Het
Togaram1 T G 12: 65,024,981 (GRCm39) C750G possibly damaging Het
Vmn2r4 A T 3: 64,313,777 (GRCm39) D401E possibly damaging Het
Wdr97 C T 15: 76,247,578 (GRCm39) R1585C probably damaging Het
Wsb1 A T 11: 79,141,881 (GRCm39) D45E probably damaging Het
Zfp808 T A 13: 62,319,709 (GRCm39) Y313N probably benign Het
Other mutations in Vmn2r13
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00965:Vmn2r13 APN 5 109,303,964 (GRCm39) missense probably damaging 1.00
IGL01373:Vmn2r13 APN 5 109,304,568 (GRCm39) missense probably damaging 1.00
IGL01946:Vmn2r13 APN 5 109,322,085 (GRCm39) missense probably benign 0.01
IGL01971:Vmn2r13 APN 5 109,321,981 (GRCm39) missense probably benign 0.01
IGL02636:Vmn2r13 APN 5 109,339,883 (GRCm39) missense probably damaging 0.98
IGL03062:Vmn2r13 APN 5 109,304,148 (GRCm39) missense probably damaging 1.00
IGL03173:Vmn2r13 APN 5 109,319,645 (GRCm39) missense possibly damaging 0.95
IGL03301:Vmn2r13 APN 5 109,305,955 (GRCm39) missense probably damaging 0.99
IGL03383:Vmn2r13 APN 5 109,304,398 (GRCm39) missense probably damaging 0.98
IGL03048:Vmn2r13 UTSW 5 109,304,151 (GRCm39) missense probably damaging 1.00
R0123:Vmn2r13 UTSW 5 109,322,915 (GRCm39) missense probably benign 0.00
R0134:Vmn2r13 UTSW 5 109,322,915 (GRCm39) missense probably benign 0.00
R0220:Vmn2r13 UTSW 5 109,304,332 (GRCm39) missense probably damaging 1.00
R0225:Vmn2r13 UTSW 5 109,322,915 (GRCm39) missense probably benign 0.00
R0393:Vmn2r13 UTSW 5 109,304,395 (GRCm39) missense probably benign 0.01
R0410:Vmn2r13 UTSW 5 109,321,679 (GRCm39) missense probably benign 0.35
R0787:Vmn2r13 UTSW 5 109,304,713 (GRCm39) missense probably damaging 0.99
R1200:Vmn2r13 UTSW 5 109,322,068 (GRCm39) missense probably damaging 1.00
R1448:Vmn2r13 UTSW 5 109,322,001 (GRCm39) missense probably damaging 1.00
R1782:Vmn2r13 UTSW 5 109,306,040 (GRCm39) missense probably benign 0.08
R1939:Vmn2r13 UTSW 5 109,339,852 (GRCm39) missense possibly damaging 0.88
R2029:Vmn2r13 UTSW 5 109,339,943 (GRCm39) missense probably benign 0.13
R2125:Vmn2r13 UTSW 5 109,306,058 (GRCm39) missense probably benign 0.00
R2126:Vmn2r13 UTSW 5 109,306,058 (GRCm39) missense probably benign 0.00
R2379:Vmn2r13 UTSW 5 109,319,644 (GRCm39) missense probably benign 0.05
R2680:Vmn2r13 UTSW 5 109,322,178 (GRCm39) missense possibly damaging 0.66
R2888:Vmn2r13 UTSW 5 109,339,840 (GRCm39) missense possibly damaging 0.88
R2889:Vmn2r13 UTSW 5 109,339,840 (GRCm39) missense possibly damaging 0.88
R2890:Vmn2r13 UTSW 5 109,339,840 (GRCm39) missense possibly damaging 0.88
R3014:Vmn2r13 UTSW 5 109,319,627 (GRCm39) missense possibly damaging 0.81
R3683:Vmn2r13 UTSW 5 109,304,721 (GRCm39) missense probably damaging 1.00
R4074:Vmn2r13 UTSW 5 109,304,566 (GRCm39) missense probably damaging 1.00
R4599:Vmn2r13 UTSW 5 109,304,322 (GRCm39) missense probably damaging 1.00
R4614:Vmn2r13 UTSW 5 109,323,065 (GRCm39) missense probably benign 0.01
R4805:Vmn2r13 UTSW 5 109,304,331 (GRCm39) missense probably damaging 1.00
R4822:Vmn2r13 UTSW 5 109,321,938 (GRCm39) missense probably damaging 0.99
R4943:Vmn2r13 UTSW 5 109,322,915 (GRCm39) missense probably benign 0.00
R5263:Vmn2r13 UTSW 5 109,321,841 (GRCm39) missense probably benign 0.00
R5297:Vmn2r13 UTSW 5 109,339,805 (GRCm39) missense probably benign 0.00
R5502:Vmn2r13 UTSW 5 109,321,580 (GRCm39) missense probably damaging 1.00
R5554:Vmn2r13 UTSW 5 109,339,860 (GRCm39) missense possibly damaging 0.49
R5563:Vmn2r13 UTSW 5 109,321,846 (GRCm39) missense probably benign 0.00
R5819:Vmn2r13 UTSW 5 109,321,966 (GRCm39) missense possibly damaging 0.79
R6074:Vmn2r13 UTSW 5 109,322,167 (GRCm39) missense probably benign 0.04
R6416:Vmn2r13 UTSW 5 109,321,982 (GRCm39) missense probably damaging 0.99
R6419:Vmn2r13 UTSW 5 109,323,085 (GRCm39) missense possibly damaging 0.87
R6484:Vmn2r13 UTSW 5 109,304,540 (GRCm39) nonsense probably null
R6486:Vmn2r13 UTSW 5 109,304,425 (GRCm39) missense probably benign 0.05
R6700:Vmn2r13 UTSW 5 109,322,938 (GRCm39) missense probably benign 0.00
R6897:Vmn2r13 UTSW 5 109,306,015 (GRCm39) missense possibly damaging 0.90
R6957:Vmn2r13 UTSW 5 109,304,753 (GRCm39) nonsense probably null
R7276:Vmn2r13 UTSW 5 109,321,645 (GRCm39) missense probably damaging 1.00
R7363:Vmn2r13 UTSW 5 109,339,909 (GRCm39) missense probably benign 0.03
R7443:Vmn2r13 UTSW 5 109,339,909 (GRCm39) missense probably benign 0.03
R7555:Vmn2r13 UTSW 5 109,319,557 (GRCm39) splice site probably null
R7607:Vmn2r13 UTSW 5 109,321,506 (GRCm39) missense probably damaging 0.98
R7719:Vmn2r13 UTSW 5 109,319,618 (GRCm39) missense probably benign 0.00
R8116:Vmn2r13 UTSW 5 109,322,926 (GRCm39) missense probably benign 0.12
R8242:Vmn2r13 UTSW 5 109,322,872 (GRCm39) missense possibly damaging 0.65
R8294:Vmn2r13 UTSW 5 109,322,978 (GRCm39) missense probably benign 0.02
R8340:Vmn2r13 UTSW 5 109,322,006 (GRCm39) missense probably benign 0.00
R8692:Vmn2r13 UTSW 5 109,319,514 (GRCm39) missense probably benign 0.03
R8742:Vmn2r13 UTSW 5 109,304,263 (GRCm39) missense probably benign 0.02
R9022:Vmn2r13 UTSW 5 109,304,242 (GRCm39) missense possibly damaging 0.94
R9281:Vmn2r13 UTSW 5 109,303,953 (GRCm39) missense probably damaging 1.00
R9529:Vmn2r13 UTSW 5 109,304,064 (GRCm39) missense probably damaging 1.00
R9708:Vmn2r13 UTSW 5 109,322,007 (GRCm39) missense probably benign 0.00
R9746:Vmn2r13 UTSW 5 109,339,773 (GRCm39) critical splice donor site probably null
X0066:Vmn2r13 UTSW 5 109,304,085 (GRCm39) missense probably benign 0.44
Predicted Primers PCR Primer
(F):5'- GGTTATTGGCCTTCACAATAGG -3'
(R):5'- TGTTTTGTCCCATCACAAAGCATAG -3'

Sequencing Primer
(F):5'- GGCCTTCACAATAGGTGTATCCTTG -3'
(R):5'- CCCATCACAAAGCATAGGTTTATAG -3'
Posted On 2018-06-06