Mutagenetix > Incidental Mutation

Incidental Mutation 'R6522:Setbp1'

521436

Institutional Source

Beutler Lab

Gene Symbol

Setbp1

Ensembl Gene

ENSMUSG00000024548

Gene Name

SET binding protein 1

Synonyms

Seb

MMRRC Submission

044648-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.625) question?

Stock #

R6522 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

78750380-79109391 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 78857390 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 1021 (T1021A)

Ref Sequence

ENSEMBL: ENSMUSP00000025430 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025430]

AlphaFold

Q9Z180

Predicted Effect

probably damaging
Transcript: ENSMUST00000025430
AA Change: T1021A

PolyPhen 2 Score 0.980 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000025430
Gene: ENSMUSG00000024548
AA Change: T1021A

Domain	Start	End	E-Value	Type
low complexity region	155	165	N/A	INTRINSIC
low complexity region	221	251	N/A	INTRINSIC
low complexity region	278	286	N/A	INTRINSIC
AT_hook	528	540	4.64e-1	SMART
low complexity region	565	571	N/A	INTRINSIC
low complexity region	594	617	N/A	INTRINSIC
low complexity region	878	887	N/A	INTRINSIC
AT_hook	960	972	1.89e-1	SMART
low complexity region	1086	1103	N/A	INTRINSIC
low complexity region	1316	1337	N/A	INTRINSIC
AT_hook	1393	1405	7.27e-1	SMART
low complexity region	1462	1486	N/A	INTRINSIC
low complexity region	1498	1514	N/A	INTRINSIC

Meta Mutation Damage Score

0.0620

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 97.8%
20x: 93.3%

Validation Efficiency

100% (56/56)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein which contains a several motifs including a ski homology region and a SET-binding region in addition to three nuclear localization signals. The encoded protein has been shown to bind the SET nuclear oncogene which is involved in DNA replication. Mutations in this gene are associated with Schinzel-Giedion midface retraction syndrome. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2011]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgb	C	A	10: 10,377,892 (GRCm38)	E1209*	probably null	Het
Adgrg5	G	T	8: 94,942,068 (GRCm38)	R503L	probably benign	Het
Anks1b	C	T	10: 90,897,327 (GRCm38)		probably benign	Het
Anxa5	A	T	3: 36,465,302 (GRCm38)	F13I	probably damaging	Het
Bicd1	A	G	6: 149,484,005 (GRCm38)	I79V	probably benign	Het
Bnip1	A	G	17: 26,789,745 (GRCm38)	D107G	probably damaging	Het
Ccdc42	A	G	11: 68,588,220 (GRCm38)	E78G	probably damaging	Het
Ccnk	A	G	12: 108,187,187 (GRCm38)	D69G	probably damaging	Het
Clec2i	G	T	6: 128,893,729 (GRCm38)	V77F	probably damaging	Het
Clec4g	A	C	8: 3,718,803 (GRCm38)	V62G	probably benign	Het
Col4a4	G	A	1: 82,487,583 (GRCm38)	A957V	unknown	Het
Csnk1d	A	G	11: 120,971,623 (GRCm38)	F277L	probably damaging	Het
Dip2c	G	A	13: 9,575,228 (GRCm38)		probably null	Het
Dpf2	T	A	19: 5,905,532 (GRCm38)	K108*	probably null	Het
Dync1h1	G	A	12: 110,616,737 (GRCm38)	D423N	probably damaging	Het
Fbxl13	T	C	5: 21,561,556 (GRCm38)		probably null	Homo
Flad1	T	C	3: 89,403,183 (GRCm38)	R488G	probably damaging	Het
Galnt6	A	C	15: 100,693,355 (GRCm38)	*623E	probably null	Het
Gtf2e1	T	C	16: 37,511,454 (GRCm38)	T420A	possibly damaging	Het
Hspg2	T	C	4: 137,555,275 (GRCm38)	V3442A	probably damaging	Het
Itpr1	A	G	6: 108,388,276 (GRCm38)	D55G	probably damaging	Het
Kdm2a	C	A	19: 4,324,826 (GRCm38)	R759L	possibly damaging	Het
Kif19a	A	G	11: 114,785,779 (GRCm38)	E478G	probably damaging	Het
Lamb3	G	A	1: 193,335,453 (GRCm38)	V881I	probably benign	Het
Map3k6	T	C	4: 133,250,024 (GRCm38)	L894P	possibly damaging	Het
Mast4	A	G	13: 102,761,293 (GRCm38)		probably null	Het
Mst1r	G	A	9: 107,913,239 (GRCm38)	V684M	probably benign	Het
Naa15	T	C	3: 51,471,514 (GRCm38)	S727P	probably damaging	Het
Nap1l1	T	C	10: 111,494,223 (GRCm38)	L330S	probably damaging	Het
Nav2	A	G	7: 49,597,533 (GRCm38)	T2205A	probably damaging	Het
Ncf2	T	C	1: 152,827,463 (GRCm38)		probably null	Het
Opa1	T	A	16: 29,625,514 (GRCm38)	N839K	probably benign	Het
Or4c104	T	C	2: 88,756,108 (GRCm38)	D189G	probably damaging	Het
Or52a33	T	C	7: 103,639,297 (GRCm38)	Y281C	probably damaging	Het
Or52n4b	G	A	7: 108,544,995 (GRCm38)	V155I	probably benign	Het
Pcdha7	T	C	18: 36,973,942 (GRCm38)	Y7H	possibly damaging	Het
Pcdhb15	T	C	18: 37,474,261 (GRCm38)	V182A	probably benign	Het
Phf10	A	T	17: 14,956,007 (GRCm38)	I128N	probably damaging	Het
Plce1	T	A	19: 38,748,521 (GRCm38)		probably null	Het
Plxnb2	T	C	15: 89,164,426 (GRCm38)	N626S	probably benign	Het
Prh1	G	A	6: 132,572,033 (GRCm38)	G168R	unknown	Het
Prss51	A	G	14: 64,097,406 (GRCm38)	T137A	possibly damaging	Het
Ptprcap	C	T	19: 4,156,184 (GRCm38)	R89C	possibly damaging	Het
Scfd1	A	G	12: 51,431,541 (GRCm38)	K512R	probably benign	Het
Serpina1b	A	C	12: 103,735,037 (GRCm38)		probably null	Het
Slco1b2	G	A	6: 141,655,419 (GRCm38)		probably null	Het
Snrnp200	C	T	2: 127,221,827 (GRCm38)	T642I	probably benign	Het
Tenm4	A	C	7: 96,843,044 (GRCm38)	I1063L	possibly damaging	Het
Tfb2m	G	A	1: 179,546,046 (GRCm38)	A29V	probably benign	Het
Tfeb	T	C	17: 47,789,702 (GRCm38)	V140A	probably damaging	Het
Tmem104	A	T	11: 115,243,753 (GRCm38)	I372F	probably damaging	Het
Tmem132d	G	T	5: 127,783,768 (GRCm38)	H1096Q	probably benign	Het
Trim12c	A	T	7: 104,348,324 (GRCm38)	N8K	probably benign	Het
Tti2	A	G	8: 31,153,603 (GRCm38)	I249V	probably null	Het
Vps8	T	A	16: 21,442,379 (GRCm38)	L90I	probably damaging	Het
Vwf	A	T	6: 125,662,963 (GRCm38)		probably null	Het
Wdfy4	A	G	14: 33,146,944 (GRCm38)	S376P	probably damaging	Het

Other mutations in Setbp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00582:Setbp1	APN	18	78,755,679 (GRCm38)	nonsense	probably null	0.00
IGL00668:Setbp1	APN	18	78,857,770 (GRCm38)	missense	probably damaging	1.00
IGL01628:Setbp1	APN	18	78,856,777 (GRCm38)	missense	probably damaging	1.00
IGL02084:Setbp1	APN	18	78,857,410 (GRCm38)	missense	probably damaging	1.00
IGL02405:Setbp1	APN	18	78,857,299 (GRCm38)	missense	probably damaging	1.00
IGL02427:Setbp1	APN	18	78,857,473 (GRCm38)	missense	probably damaging	1.00
IGL02612:Setbp1	APN	18	78,755,710 (GRCm38)	missense	probably damaging	1.00
IGL02725:Setbp1	APN	18	78,857,374 (GRCm38)	nonsense	probably null
IGL03005:Setbp1	APN	18	78,859,125 (GRCm38)	missense	possibly damaging	0.75
IGL03123:Setbp1	APN	18	78,857,009 (GRCm38)	missense	probably damaging	1.00
R1083:Setbp1	UTSW	18	78,857,626 (GRCm38)	missense	probably damaging	1.00
R1110:Setbp1	UTSW	18	78,857,860 (GRCm38)	missense	probably damaging	1.00
R1167:Setbp1	UTSW	18	78,857,236 (GRCm38)	missense	possibly damaging	0.85
R1221:Setbp1	UTSW	18	78,856,583 (GRCm38)	missense	probably damaging	1.00
R1225:Setbp1	UTSW	18	78,858,208 (GRCm38)	missense	probably damaging	0.99
R1327:Setbp1	UTSW	18	78,783,358 (GRCm38)	missense	probably benign	0.00
R1481:Setbp1	UTSW	18	78,783,301 (GRCm38)	missense	probably benign	0.01
R1482:Setbp1	UTSW	18	79,086,835 (GRCm38)	missense	probably damaging	1.00
R1496:Setbp1	UTSW	18	78,859,912 (GRCm38)	missense	probably damaging	1.00
R1550:Setbp1	UTSW	18	78,858,592 (GRCm38)	missense	probably damaging	1.00
R1708:Setbp1	UTSW	18	78,858,467 (GRCm38)	missense	probably damaging	0.99
R1751:Setbp1	UTSW	18	78,857,398 (GRCm38)	missense	probably damaging	1.00
R1922:Setbp1	UTSW	18	78,858,362 (GRCm38)	missense	possibly damaging	0.75
R1986:Setbp1	UTSW	18	78,858,544 (GRCm38)	missense	probably damaging	0.99
R2090:Setbp1	UTSW	18	78,856,720 (GRCm38)	missense	probably benign	0.00
R2851:Setbp1	UTSW	18	78,923,996 (GRCm38)	missense	probably benign	0.11
R2853:Setbp1	UTSW	18	78,923,996 (GRCm38)	missense	probably benign	0.11
R2941:Setbp1	UTSW	18	78,858,197 (GRCm38)	missense	probably damaging	1.00
R3151:Setbp1	UTSW	18	78,857,435 (GRCm38)	missense	probably damaging	1.00
R3156:Setbp1	UTSW	18	78,859,303 (GRCm38)	missense	probably benign	0.00
R3807:Setbp1	UTSW	18	78,783,322 (GRCm38)	missense	probably benign	0.01
R4133:Setbp1	UTSW	18	78,856,991 (GRCm38)	missense	probably benign	0.05
R4287:Setbp1	UTSW	18	78,859,061 (GRCm38)	missense	probably benign	0.03
R4345:Setbp1	UTSW	18	79,086,579 (GRCm38)	missense	probably damaging	0.99
R4374:Setbp1	UTSW	18	78,859,922 (GRCm38)	missense	probably damaging	0.97
R4377:Setbp1	UTSW	18	78,859,922 (GRCm38)	missense	probably damaging	0.97
R4378:Setbp1	UTSW	18	78,856,618 (GRCm38)	missense	possibly damaging	0.95
R4379:Setbp1	UTSW	18	79,086,681 (GRCm38)	missense	probably damaging	1.00
R4585:Setbp1	UTSW	18	79,086,949 (GRCm38)	missense	probably benign	0.00
R4595:Setbp1	UTSW	18	78,857,516 (GRCm38)	missense	probably benign	0.00
R4817:Setbp1	UTSW	18	78,858,800 (GRCm38)	missense	probably damaging	1.00
R4971:Setbp1	UTSW	18	78,858,167 (GRCm38)	missense	probably benign	0.07
R4976:Setbp1	UTSW	18	79,086,712 (GRCm38)	missense	probably damaging	1.00
R5017:Setbp1	UTSW	18	78,856,594 (GRCm38)	missense	possibly damaging	0.81
R5066:Setbp1	UTSW	18	78,857,299 (GRCm38)	missense	probably damaging	1.00
R5133:Setbp1	UTSW	18	78,857,482 (GRCm38)	missense	probably damaging	1.00
R5151:Setbp1	UTSW	18	78,857,999 (GRCm38)	missense	probably damaging	1.00
R5237:Setbp1	UTSW	18	78,856,975 (GRCm38)	missense	possibly damaging	0.92
R5480:Setbp1	UTSW	18	78,858,063 (GRCm38)	missense	probably damaging	0.99
R5507:Setbp1	UTSW	18	79,086,712 (GRCm38)	missense	probably damaging	1.00
R5529:Setbp1	UTSW	18	79,086,652 (GRCm38)	missense	probably damaging	0.99
R5622:Setbp1	UTSW	18	78,857,485 (GRCm38)	missense	probably damaging	1.00
R5722:Setbp1	UTSW	18	78,856,645 (GRCm38)	missense	possibly damaging	0.95
R5806:Setbp1	UTSW	18	78,856,482 (GRCm38)	splice site	probably null
R5940:Setbp1	UTSW	18	78,755,488 (GRCm38)	missense	probably damaging	1.00
R6025:Setbp1	UTSW	18	78,859,240 (GRCm38)	missense	probably damaging	0.98
R6030:Setbp1	UTSW	18	78,857,711 (GRCm38)	missense	probably benign	0.02
R6030:Setbp1	UTSW	18	78,857,711 (GRCm38)	missense	probably benign	0.02
R6250:Setbp1	UTSW	18	78,858,002 (GRCm38)	missense	probably benign	0.00
R6256:Setbp1	UTSW	18	78,857,257 (GRCm38)	missense	probably damaging	1.00
R6332:Setbp1	UTSW	18	78,783,369 (GRCm38)	missense	probably benign	0.21
R6873:Setbp1	UTSW	18	78,859,559 (GRCm38)	missense	probably benign	0.00
R6886:Setbp1	UTSW	18	78,857,500 (GRCm38)	missense	probably damaging	1.00
R6986:Setbp1	UTSW	18	78,857,839 (GRCm38)	missense	probably damaging	1.00
R7042:Setbp1	UTSW	18	79,086,855 (GRCm38)	missense	probably damaging	1.00
R7131:Setbp1	UTSW	18	79,086,960 (GRCm38)	missense	probably benign	0.08
R7134:Setbp1	UTSW	18	78,859,519 (GRCm38)	missense	possibly damaging	0.86
R7215:Setbp1	UTSW	18	78,856,837 (GRCm38)	missense	probably damaging	0.97
R7219:Setbp1	UTSW	18	78,755,745 (GRCm38)	missense	probably damaging	1.00
R7378:Setbp1	UTSW	18	78,857,486 (GRCm38)	missense	probably damaging	1.00
R7461:Setbp1	UTSW	18	78,856,492 (GRCm38)	missense	probably benign	0.06
R7589:Setbp1	UTSW	18	78,856,492 (GRCm38)	missense	probably benign	0.01
R7840:Setbp1	UTSW	18	78,783,424 (GRCm38)	missense	probably benign	0.03
R7849:Setbp1	UTSW	18	78,856,853 (GRCm38)	missense	probably benign	0.00
R8147:Setbp1	UTSW	18	78,856,800 (GRCm38)	missense	probably damaging	1.00
R8354:Setbp1	UTSW	18	78,857,383 (GRCm38)	missense	probably damaging	1.00
R8446:Setbp1	UTSW	18	78,857,756 (GRCm38)	missense	probably damaging	1.00
R8524:Setbp1	UTSW	18	78,858,754 (GRCm38)	missense	probably damaging	1.00
R8534:Setbp1	UTSW	18	78,783,327 (GRCm38)	missense	possibly damaging	0.86
R8694:Setbp1	UTSW	18	78,858,301 (GRCm38)	missense	probably damaging	1.00
R8931:Setbp1	UTSW	18	78,856,508 (GRCm38)	missense	probably benign	0.00
R8983:Setbp1	UTSW	18	78,859,244 (GRCm38)	missense	probably benign	0.37
R9062:Setbp1	UTSW	18	78,857,051 (GRCm38)	missense	probably benign	0.01
R9113:Setbp1	UTSW	18	78,857,733 (GRCm38)	missense	probably damaging	0.99
R9364:Setbp1	UTSW	18	78,783,384 (GRCm38)	missense	probably benign	0.00
R9513:Setbp1	UTSW	18	78,856,566 (GRCm38)	missense	probably damaging	1.00
R9517:Setbp1	UTSW	18	78,858,107 (GRCm38)	missense	probably damaging	0.99
R9549:Setbp1	UTSW	18	78,859,414 (GRCm38)	missense	probably benign	0.07
R9554:Setbp1	UTSW	18	78,783,384 (GRCm38)	missense	probably benign	0.00
R9680:Setbp1	UTSW	18	78,859,283 (GRCm38)	missense	probably benign
R9711:Setbp1	UTSW	18	78,856,927 (GRCm38)	missense	probably benign	0.30
Z1088:Setbp1	UTSW	18	78,859,594 (GRCm38)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- CATGAAAGGGGATGCTGCTC -3'
(R):5'- TCTGGCAGAGCTGGAAGAACTC -3'

Sequencing Primer
(F):5'- CTCCGAGTGTGTGTGACAGGTAC -3'
(R):5'- AAGTGTTCAGGATCTCCCACCG -3'

Posted On

2018-06-06