Incidental Mutation 'R6551:Nol9'
ID 521602
Institutional Source Beutler Lab
Gene Symbol Nol9
Ensembl Gene ENSMUSG00000028948
Gene Name nucleolar protein 9
Synonyms 6030462G04Rik, 4632412I24Rik
MMRRC Submission 044676-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.957) question?
Stock # R6551 (G1)
Quality Score 225.009
Status Validated
Chromosome 4
Chromosomal Location 152123778-152145951 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 152136325 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Isoleucine at position 466 (V466I)
Ref Sequence ENSEMBL: ENSMUSP00000099486 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000084116] [ENSMUST00000103197]
AlphaFold Q3TZX8
Predicted Effect possibly damaging
Transcript: ENSMUST00000084116
AA Change: V466I

PolyPhen 2 Score 0.800 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000081133
Gene: ENSMUSG00000028948
AA Change: V466I

DomainStartEndE-ValueType
low complexity region 24 42 N/A INTRINSIC
low complexity region 45 54 N/A INTRINSIC
low complexity region 79 106 N/A INTRINSIC
low complexity region 281 294 N/A INTRINSIC
Pfam:CLP1_P 322 480 7.5e-37 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000103197
AA Change: V466I

PolyPhen 2 Score 0.800 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000099486
Gene: ENSMUSG00000028948
AA Change: V466I

DomainStartEndE-ValueType
low complexity region 24 42 N/A INTRINSIC
low complexity region 45 54 N/A INTRINSIC
low complexity region 79 106 N/A INTRINSIC
low complexity region 281 294 N/A INTRINSIC
Pfam:MobB 316 429 5.9e-18 PFAM
Pfam:Clp1 425 665 1.9e-67 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000105663
SMART Domains Protein: ENSMUSP00000101288
Gene: ENSMUSG00000028948

DomainStartEndE-ValueType
low complexity region 24 42 N/A INTRINSIC
low complexity region 45 54 N/A INTRINSIC
low complexity region 79 106 N/A INTRINSIC
low complexity region 281 294 N/A INTRINSIC
Pfam:MobB 316 429 5.3e-18 PFAM
Pfam:Clp1 425 627 5.8e-46 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000131696
Predicted Effect noncoding transcript
Transcript: ENSMUST00000147797
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.3%
  • 20x: 97.6%
Validation Efficiency 100% (41/41)
Allele List at MGI
Other mutations in this stock
Total: 42 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A130010J15Rik A T 1: 192,856,831 (GRCm39) Q61L probably damaging Het
Acss2 T C 2: 155,393,128 (GRCm39) S285P probably benign Het
Ager A G 17: 34,818,442 (GRCm39) probably null Het
Alkbh7 T A 17: 57,305,945 (GRCm39) Y115* probably null Het
Brwd1 T C 16: 95,795,162 (GRCm39) D2184G possibly damaging Het
Chp1 T A 2: 119,402,294 (GRCm39) H89Q possibly damaging Het
Clmp T C 9: 40,682,573 (GRCm39) V119A probably benign Het
Cryge A T 1: 65,087,796 (GRCm39) M171K probably benign Het
Cttnbp2nl A T 3: 104,912,433 (GRCm39) S484T possibly damaging Het
Dsg3 C A 18: 20,672,968 (GRCm39) P880T unknown Het
Eml2 G A 7: 18,935,088 (GRCm39) V432I probably damaging Het
Espn T C 4: 152,213,223 (GRCm39) Het
Fbxo31 A C 8: 122,291,443 (GRCm39) probably benign Het
Grin2b A G 6: 135,710,342 (GRCm39) V1068A probably damaging Het
Jak1 C A 4: 101,051,040 (GRCm39) probably benign Het
Klra10 A T 6: 130,252,718 (GRCm39) D185E probably benign Het
Lhx1 A C 11: 84,412,739 (GRCm39) D60E probably benign Het
Lyar C A 5: 38,390,616 (GRCm39) A326D probably damaging Het
Muc16 A C 9: 18,473,858 (GRCm39) S1280A possibly damaging Het
Or10d1 C A 9: 39,483,856 (GRCm39) R233L probably benign Het
Or12e8 T C 2: 87,677,005 (GRCm39) V130A possibly damaging Het
Or1e17 T C 11: 73,831,129 (GRCm39) I19T probably benign Het
Or1o1 G A 17: 37,716,796 (GRCm39) R119H probably benign Het
Or2w3b A T 11: 58,623,583 (GRCm39) M136K probably damaging Het
Or2y10 G T 11: 49,454,816 (GRCm39) V23L probably benign Het
Pik3c2a A T 7: 116,016,731 (GRCm39) I342N probably damaging Het
Pnldc1 A G 17: 13,124,456 (GRCm39) M133T probably damaging Het
Rab11fip1 G A 8: 27,646,512 (GRCm39) S188L probably damaging Het
Rapgef2 A T 3: 79,122,342 (GRCm39) probably null Het
Rnf103 G A 6: 71,487,349 (GRCm39) C660Y probably damaging Het
Rph3al G A 11: 75,797,372 (GRCm39) S108F possibly damaging Het
Srsf7 A C 17: 80,511,648 (GRCm39) probably benign Het
Ssrp1 A G 2: 84,871,450 (GRCm39) probably null Het
Tamm41 T C 6: 114,989,142 (GRCm39) D284G possibly damaging Het
Tmem161b C A 13: 84,370,537 (GRCm39) probably benign Het
Tmem39b A G 4: 129,585,896 (GRCm39) V25A probably benign Het
Tmem88b G T 4: 155,870,149 (GRCm39) probably benign Het
Unk T C 11: 115,941,550 (GRCm39) W266R probably damaging Het
Usp8 T A 2: 126,575,102 (GRCm39) probably benign Het
Zbtb48 T G 4: 152,106,678 (GRCm39) Q142P probably benign Het
Zdhhc18 T C 4: 133,340,960 (GRCm39) T267A probably benign Het
Zfp335 G A 2: 164,751,285 (GRCm39) P94S probably benign Het
Other mutations in Nol9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00770:Nol9 APN 4 152,136,472 (GRCm39) missense probably benign 0.38
IGL00774:Nol9 APN 4 152,136,472 (GRCm39) missense probably benign 0.38
IGL00885:Nol9 APN 4 152,126,057 (GRCm39) missense probably damaging 1.00
IGL01125:Nol9 APN 4 152,131,066 (GRCm39) missense probably damaging 1.00
IGL01368:Nol9 APN 4 152,142,848 (GRCm39) missense probably benign
IGL01759:Nol9 APN 4 152,130,500 (GRCm39) intron probably benign
IGL01983:Nol9 APN 4 152,130,494 (GRCm39) critical splice donor site probably null
IGL02185:Nol9 APN 4 152,142,368 (GRCm39) missense probably damaging 1.00
IGL02869:Nol9 APN 4 152,131,030 (GRCm39) missense probably damaging 1.00
IGL02967:Nol9 APN 4 152,125,559 (GRCm39) missense possibly damaging 0.95
R0401:Nol9 UTSW 4 152,137,062 (GRCm39) missense probably benign 0.00
R3721:Nol9 UTSW 4 152,124,163 (GRCm39) missense probably benign 0.07
R4429:Nol9 UTSW 4 152,125,631 (GRCm39) missense probably damaging 1.00
R4460:Nol9 UTSW 4 152,142,293 (GRCm39) missense probably damaging 1.00
R4837:Nol9 UTSW 4 152,136,552 (GRCm39) intron probably benign
R5137:Nol9 UTSW 4 152,130,428 (GRCm39) missense probably damaging 1.00
R5698:Nol9 UTSW 4 152,135,031 (GRCm39) missense probably damaging 0.98
R6190:Nol9 UTSW 4 152,125,691 (GRCm39) missense possibly damaging 0.85
R6317:Nol9 UTSW 4 152,125,514 (GRCm39) missense probably damaging 1.00
R6372:Nol9 UTSW 4 152,130,452 (GRCm39) missense probably damaging 1.00
R6525:Nol9 UTSW 4 152,123,906 (GRCm39) missense probably damaging 0.98
R6580:Nol9 UTSW 4 152,136,218 (GRCm39) missense probably benign 0.00
R7538:Nol9 UTSW 4 152,124,115 (GRCm39) missense probably benign 0.05
R8143:Nol9 UTSW 4 152,125,559 (GRCm39) missense possibly damaging 0.95
R9018:Nol9 UTSW 4 152,123,918 (GRCm39) missense probably damaging 0.99
R9428:Nol9 UTSW 4 152,124,109 (GRCm39) missense probably benign 0.00
R9578:Nol9 UTSW 4 152,125,706 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- TCTTGTCAGCTGTGCATATGC -3'
(R):5'- ACAAGCGGTTCTGTACTTACCTG -3'

Sequencing Primer
(F):5'- GCATATGCTGCCTGTCCATGG -3'
(R):5'- GGTTCTGTACTTACCTGTTCTTTTC -3'
Posted On 2018-06-06