Incidental Mutation 'R6553:Or6c6c'
| ID |
521789 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or6c6c
|
| Ensembl Gene |
ENSMUSG00000095401 |
| Gene Name |
olfactory receptor family 6 subfamily C member 6C |
| Synonyms |
GA_x6K02T2PULF-11383575-11384519, MOR110-7, Olfr804 |
| MMRRC Submission |
044678-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.079)
|
| Stock # |
R6553 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
10 |
| Chromosomal Location |
129540749-129541693 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to T
at 129540932 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Cysteine
at position 62
(R62C)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000150132
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000077312]
[ENSMUST00000213331]
|
| AlphaFold |
Q7TRH7 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000077312
AA Change: R62C
PolyPhen 2
Score 0.072 (Sensitivity: 0.94; Specificity: 0.84)
|
| SMART Domains |
Protein: ENSMUSP00000076540
Gene: ENSMUSG00000095401
AA Change: R62C
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
29 |
306 |
6e-48 |
PFAM |
|
Pfam:7tm_1
|
39 |
288 |
3.3e-23 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000213331
AA Change: R62C
PolyPhen 2
Score 0.072 (Sensitivity: 0.94; Specificity: 0.84)
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000216747
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.3%
- 20x: 97.6%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 26 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adam1b |
G |
T |
5: 121,639,250 (GRCm39) |
D598E |
probably benign |
Het |
| Ascc3 |
A |
G |
10: 50,718,273 (GRCm39) |
K1989E |
probably benign |
Het |
| Asic5 |
A |
T |
3: 81,916,773 (GRCm39) |
T288S |
possibly damaging |
Het |
| Chd1 |
A |
G |
17: 15,945,692 (GRCm39) |
N72S |
probably benign |
Het |
| Ciita |
T |
A |
16: 10,329,609 (GRCm39) |
V628E |
probably benign |
Het |
| Cyp2c50 |
A |
G |
19: 40,079,046 (GRCm39) |
T130A |
probably benign |
Het |
| Dapk1 |
T |
A |
13: 60,908,975 (GRCm39) |
V1196E |
probably damaging |
Het |
| Dis3l2 |
T |
A |
1: 86,673,216 (GRCm39) |
I69N |
probably damaging |
Het |
| Exph5 |
A |
G |
9: 53,213,012 (GRCm39) |
|
probably benign |
Het |
| Fcgbp |
A |
T |
7: 27,813,404 (GRCm39) |
Q2313L |
possibly damaging |
Het |
| Gm2888 |
A |
G |
14: 3,037,722 (GRCm38) |
H238R |
possibly damaging |
Het |
| Gm5622 |
A |
G |
14: 51,895,200 (GRCm39) |
K120E |
probably damaging |
Het |
| Gpr155 |
A |
T |
2: 73,179,989 (GRCm39) |
I157N |
probably damaging |
Het |
| Hltf |
T |
C |
3: 20,126,558 (GRCm39) |
V245A |
probably damaging |
Het |
| Kmt2e |
G |
A |
5: 23,668,024 (GRCm39) |
V28I |
probably damaging |
Het |
| Lsm3 |
GATATATA |
GATATATATA |
6: 91,496,617 (GRCm39) |
|
probably null |
Het |
| Nprl3 |
C |
T |
11: 32,184,812 (GRCm39) |
R399Q |
probably benign |
Het |
| Ptgs2 |
T |
C |
1: 149,979,738 (GRCm39) |
V281A |
possibly damaging |
Het |
| Speer4f2 |
A |
G |
5: 17,579,420 (GRCm39) |
E73G |
probably damaging |
Het |
| Tmem161b |
C |
A |
13: 84,370,537 (GRCm39) |
|
probably benign |
Het |
| Trav13n-3 |
A |
G |
14: 53,574,618 (GRCm39) |
T14A |
probably benign |
Het |
| Trav9d-4 |
A |
T |
14: 53,221,198 (GRCm39) |
Q63L |
probably benign |
Het |
| Vmn2r75 |
T |
A |
7: 85,813,453 (GRCm39) |
N450Y |
probably benign |
Het |
| Vmn2r97 |
G |
A |
17: 19,150,566 (GRCm39) |
W471* |
probably null |
Het |
| Zfp27 |
G |
A |
7: 29,595,818 (GRCm39) |
T49I |
possibly damaging |
Het |
| Zpld2 |
A |
G |
4: 133,929,367 (GRCm39) |
S313P |
probably damaging |
Het |
|
| Other mutations in Or6c6c |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01613:Or6c6c
|
APN |
10 |
129,541,492 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02041:Or6c6c
|
APN |
10 |
129,541,104 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02245:Or6c6c
|
APN |
10 |
129,541,608 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02341:Or6c6c
|
APN |
10 |
129,541,358 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02433:Or6c6c
|
APN |
10 |
129,541,445 (GRCm39) |
missense |
probably benign |
0.01 |
|
authen
|
UTSW |
10 |
129,541,668 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0111:Or6c6c
|
UTSW |
10 |
129,541,146 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0309:Or6c6c
|
UTSW |
10 |
129,541,008 (GRCm39) |
missense |
probably benign |
0.38 |
|
R0326:Or6c6c
|
UTSW |
10 |
129,541,638 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R0374:Or6c6c
|
UTSW |
10 |
129,541,516 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1573:Or6c6c
|
UTSW |
10 |
129,541,487 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1663:Or6c6c
|
UTSW |
10 |
129,541,160 (GRCm39) |
missense |
probably benign |
0.44 |
|
R1778:Or6c6c
|
UTSW |
10 |
129,541,574 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1789:Or6c6c
|
UTSW |
10 |
129,541,476 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R1906:Or6c6c
|
UTSW |
10 |
129,541,365 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2108:Or6c6c
|
UTSW |
10 |
129,541,490 (GRCm39) |
missense |
probably benign |
|
|
R2211:Or6c6c
|
UTSW |
10 |
129,541,320 (GRCm39) |
missense |
probably benign |
|
|
R2432:Or6c6c
|
UTSW |
10 |
129,540,794 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R2902:Or6c6c
|
UTSW |
10 |
129,541,320 (GRCm39) |
missense |
probably benign |
|
|
R4114:Or6c6c
|
UTSW |
10 |
129,541,668 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5149:Or6c6c
|
UTSW |
10 |
129,541,377 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5153:Or6c6c
|
UTSW |
10 |
129,541,026 (GRCm39) |
missense |
probably benign |
0.05 |
|
R5846:Or6c6c
|
UTSW |
10 |
129,540,756 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7676:Or6c6c
|
UTSW |
10 |
129,541,155 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R8161:Or6c6c
|
UTSW |
10 |
129,540,753 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R9266:Or6c6c
|
UTSW |
10 |
129,541,547 (GRCm39) |
missense |
probably benign |
0.17 |
|
R9318:Or6c6c
|
UTSW |
10 |
129,541,283 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9334:Or6c6c
|
UTSW |
10 |
129,541,683 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9746:Or6c6c
|
UTSW |
10 |
129,541,208 (GRCm39) |
missense |
probably damaging |
0.97 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGTTTGCTAAGGCTCATGCATG -3'
(R):5'- CACTTTGCTGTTCATGATGATAGG -3'
Sequencing Primer
(F):5'- CATGCATGAGAATGAAAAATCAGTC -3'
(R):5'- TGGCAACATAGCGGTCATAG -3'
|
| Posted On |
2018-06-06 |
Incidental Mutation