Incidental Mutation 'R6528:Lypd8'
ID522099
Institutional Source Beutler Lab
Gene Symbol Lypd8
Ensembl Gene ENSMUSG00000013643
Gene NameLY6/PLAUR domain containing 8
Synonyms
MMRRC Submission
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.068) question?
Stock #R6528 (G1)
Quality Score220.009
Status Validated
Chromosome11
Chromosomal Location58379043-58390728 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) G to A at 58384613 bp
ZygosityHeterozygous
Amino Acid Change Glycine to Glutamic Acid at position 58 (G58E)
Ref Sequence ENSEMBL: ENSMUSP00000104454 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000013787] [ENSMUST00000108826]
Predicted Effect probably damaging
Transcript: ENSMUST00000013787
AA Change: G58E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000013787
Gene: ENSMUSG00000013643
AA Change: G58E

DomainStartEndE-ValueType
signal peptide 1 20 N/A INTRINSIC
Pfam:UPAR_LY6 23 105 3.4e-5 PFAM
Pfam:UPAR_LY6 121 197 2.3e-5 PFAM
low complexity region 199 212 N/A INTRINSIC
low complexity region 248 254 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000108826
AA Change: G58E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000104454
Gene: ENSMUSG00000013643
AA Change: G58E

DomainStartEndE-ValueType
signal peptide 1 20 N/A INTRINSIC
Pfam:UPAR_LY6 23 105 1.9e-4 PFAM
Pfam:UPAR_LY6 121 197 4.9e-5 PFAM
low complexity region 199 212 N/A INTRINSIC
low complexity region 248 254 N/A INTRINSIC
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.5%
  • 10x: 97.4%
  • 20x: 91.6%
Validation Efficiency 98% (55/56)
MGI Phenotype FUNCTION: This gene encodes a member of the Ly6/PLAUR family of cysteine-rich proteins that plays an important role in the protection of colonic epithelium from flagellated microbiota. The encoded protein undergoes proteolytic processing to generate a mature, glycosylphosphatidylinositol-anchored protein that is localized to the apical surface of the colonic epithelial cells. Mice lacking the encoded protein are sensitive to chemically induced intestinal inflammation. [provided by RefSeq, Aug 2016]
PHENOTYPE: No notable phenotype was detected in a high throughput screen of homozygous mice. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam29 C T 8: 55,872,561 R286H possibly damaging Het
Arhgap29 T A 3: 122,014,702 N1176K probably benign Het
C87977 A G 4: 144,208,811 V120A probably damaging Het
Cacfd1 T G 2: 27,018,939 D97E probably benign Het
Ccnj C A 19: 40,832,085 probably null Het
Chad A G 11: 94,565,624 Y176C probably damaging Het
Chd5 T C 4: 152,356,676 L191P probably damaging Het
Cmtm1 T C 8: 104,309,295 D190G possibly damaging Het
Cyp3a16 C T 5: 145,440,431 A449T probably damaging Het
Eml5 T C 12: 98,824,637 E1334G probably benign Het
Endou C T 15: 97,719,629 E147K probably damaging Het
Fbxo21 C A 5: 118,000,356 H449N probably benign Het
Fkbp15 A G 4: 62,332,270 I363T probably damaging Het
Gm12887 C A 4: 121,615,637 G103C probably damaging Het
Gm14410 T A 2: 177,193,508 H321L probably damaging Het
Gtf2h3 C T 5: 124,584,297 T121I probably benign Het
Irgm2 C T 11: 58,220,052 P202S probably benign Het
Khsrp G A 17: 57,023,543 T551I probably damaging Het
Lpin2 T A 17: 71,244,005 I720N probably damaging Het
Mdn1 G T 4: 32,713,780 L1952F probably damaging Het
Med13 G A 11: 86,298,954 P1043L probably damaging Het
Mycbp2 T C 14: 103,142,881 T3832A probably damaging Het
Nrxn3 C T 12: 89,513,049 R654C probably damaging Het
Olfr1082 T C 2: 86,594,465 D121G probably damaging Het
Olfr512 T C 7: 108,713,431 L14P probably damaging Het
Olfr530 G T 7: 140,373,441 H56Q possibly damaging Het
Olfr535 A G 7: 140,493,051 M138V probably damaging Het
Pcdhb6 A G 18: 37,334,503 D159G probably damaging Het
Plec T C 15: 76,174,430 E3759G probably damaging Het
Plekho1 C T 3: 95,989,321 D236N probably damaging Het
Pnma1 T A 12: 84,147,423 I169F probably benign Het
Ppl T A 16: 5,087,616 H1605L probably benign Het
Ppp2r2b T A 18: 42,688,338 M252L probably benign Het
Prickle4 T A 17: 47,689,333 R246* probably null Het
Rad50 G A 11: 53,652,282 T1235I probably damaging Het
Ranbp10 T C 8: 105,779,956 N244S probably damaging Het
Robo4 T C 9: 37,404,368 S306P possibly damaging Het
Shox2 C A 3: 66,981,285 R91L probably benign Het
Tbx5 A G 5: 119,883,111 E394G probably damaging Het
Tcl1b5 A G 12: 105,178,999 N74S probably benign Het
Tgif1 G A 17: 70,846,560 probably benign Het
Tmem128 T A 5: 38,266,499 probably null Het
Trio A G 15: 27,805,870 S511P probably damaging Het
Trps1 A G 15: 50,822,427 I114T probably benign Het
Ttll8 G T 15: 88,914,238 Q765K probably benign Het
Usp17ld A T 7: 103,250,755 D323E probably damaging Het
Vmn1r232 G A 17: 20,914,047 T97I probably benign Het
Vmn2r28 T A 7: 5,490,685 R87S probably benign Het
Vps26b C G 9: 27,010,466 E254D probably benign Het
Vps8 C A 16: 21,554,125 Y113* probably null Het
Wwc1 C T 11: 35,853,437 E853K probably benign Het
Xcr1 A T 9: 123,855,983 I238N probably damaging Het
Zar1l T A 5: 150,507,130 E272V probably damaging Het
Zfp451 A G 1: 33,777,781 Y146H probably damaging Het
Zfp54 G T 17: 21,433,474 E77* probably null Het
Other mutations in Lypd8
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01895:Lypd8 APN 11 58390220 missense possibly damaging 0.53
confusion UTSW 11 58386757 missense probably benign 0.00
quandary UTSW 11 58384613 missense probably damaging 1.00
R0096:Lypd8 UTSW 11 58386757 missense probably benign 0.00
R0628:Lypd8 UTSW 11 58384673 missense probably damaging 1.00
R0711:Lypd8 UTSW 11 58386757 missense probably benign 0.00
R2294:Lypd8 UTSW 11 58386854 missense probably damaging 0.99
R3033:Lypd8 UTSW 11 58384627 missense probably damaging 0.99
R4562:Lypd8 UTSW 11 58382389 critical splice donor site probably null
R4610:Lypd8 UTSW 11 58386849 missense probably benign 0.00
R5224:Lypd8 UTSW 11 58386808 missense possibly damaging 0.93
R5468:Lypd8 UTSW 11 58386760 missense probably damaging 0.96
R6213:Lypd8 UTSW 11 58390334 missense probably benign
R6228:Lypd8 UTSW 11 58386803 missense possibly damaging 0.60
R6947:Lypd8 UTSW 11 58382766 missense probably benign 0.00
R7811:Lypd8 UTSW 11 58390238 missense possibly damaging 0.53
RF018:Lypd8 UTSW 11 58390232 small insertion probably benign
RF028:Lypd8 UTSW 11 58390239 small insertion probably benign
RF039:Lypd8 UTSW 11 58390231 small insertion probably benign
RF042:Lypd8 UTSW 11 58390243 small insertion probably benign
RF043:Lypd8 UTSW 11 58390243 small insertion probably benign
RF054:Lypd8 UTSW 11 58390251 small insertion probably benign
RF057:Lypd8 UTSW 11 58390239 small insertion probably benign
Z1088:Lypd8 UTSW 11 58386730 missense possibly damaging 0.92
Predicted Primers PCR Primer
(F):5'- TCTGATGGGGAACAGTTTTCTC -3'
(R):5'- CCTGTACAAACCAGAGTGGG -3'

Sequencing Primer
(F):5'- GTTAAAGACGTGCCATTGCC -3'
(R):5'- GTGGCATTGCAGGACTCTC -3'
Posted On2018-06-06