Mutagenetix > Incidental Mutation

Incidental Mutation 'R6556:Serinc2'

522146

Institutional Source

Beutler Lab

Gene Symbol

Serinc2

Ensembl Gene

ENSMUSG00000023232

Gene Name

serine incorporator 2

Synonyms

FKSG84, 2310004K20Rik, TDE2, Tde2l

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.091) question?

Stock #

R6556 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

130253495-130279205 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 130258271 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 267 (I267F)

Ref Sequence

ENSEMBL: ENSMUSP00000112535 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000105996] [ENSMUST00000120126] [ENSMUST00000122374] [ENSMUST00000146478]

AlphaFold

Q8K0E7

Predicted Effect

probably damaging
Transcript: ENSMUST00000105996
AA Change: I322F

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000101618
Gene: ENSMUSG00000023232
AA Change: I322F

Domain	Start	End	E-Value	Type
Pfam:Serinc	15	449	4.1e-162	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000120126
AA Change: I331F

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000113044
Gene: ENSMUSG00000023232
AA Change: I331F

Domain	Start	End	E-Value	Type
Pfam:Serinc	25	457	1.4e-158	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000122374
AA Change: I267F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000112535
Gene: ENSMUSG00000023232
AA Change: I267F

Domain	Start	End	E-Value	Type
Pfam:Serinc	1	394	2.9e-148	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000146478

SMART Domains

Protein: ENSMUSP00000115198
Gene: ENSMUSG00000023232

Domain	Start	End	E-Value	Type
Pfam:Serinc	1	148	1.9e-56	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.3%
20x: 97.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 44 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700029P11Rik	A	G	15: 81,980,738	D60G	probably damaging	Het
2310035C23Rik	T	A	1: 105,726,440	F845I	probably damaging	Het
4930539E08Rik	T	A	17: 28,904,611	D114V	probably damaging	Het
AF366264	G	A	8: 13,837,690	Q134*	probably null	Het
Atp2a1	G	T	7: 126,450,262	P536Q	probably benign	Het
Cabyr	T	A	18: 12,751,016	S187T	probably benign	Het
Camkk1	A	T	11: 73,033,870	N303I	probably benign	Het
Cdh13	C	T	8: 118,968,187	P259S	probably damaging	Het
Csnk1g3	A	G	18: 53,930,282	D255G	possibly damaging	Het
Dennd5b	A	C	6: 149,014,251		probably null	Het
Dnajc14	A	G	10: 128,814,631	D528G	probably benign	Het
Edem1	T	C	6: 108,854,357	F593S	probably benign	Het
Erbb2	G	A	11: 98,436,082	D1106N	possibly damaging	Het
Ermp1	T	C	19: 29,612,921	M794V	possibly damaging	Het
Fam208a	T	G	14: 27,429,258	Y64D	probably benign	Het
Fam214b	C	T	4: 43,033,896	R460H	probably damaging	Het
Fip1l1	T	A	5: 74,547,177		probably null	Het
Gm11639	A	G	11: 105,008,251	N4343S	probably null	Het
Gm20730	C	T	6: 43,081,542	C112Y	probably damaging	Het
Gtf2h1	T	A	7: 46,808,665	C245S	probably damaging	Het
Hdhd5	T	C	6: 120,523,554	H61R	probably benign	Het
Ighv1-71	A	T	12: 115,742,472	V31E	probably damaging	Het
Igsf9b	T	C	9: 27,329,555	F688S	probably damaging	Het
Iqcd	T	C	5: 120,602,378	V258A	probably damaging	Het
Kcnc2	G	C	10: 112,271,856	G51R	probably benign	Het
Lpo	G	T	11: 87,817,763	Y136*	probably null	Het
Med30	A	G	15: 52,730,383		probably benign	Het
Mertk	T	A	2: 128,776,421	V524D	probably benign	Het
Olfr1156	T	C	2: 87,949,976	I86V	probably benign	Het
Olfr1261	T	A	2: 89,994,173	F260Y	probably benign	Het
Olfr1263	T	C	2: 90,015,094	Y55H	probably damaging	Het
Pde6b	T	A	5: 108,421,501	M358K	possibly damaging	Het
Prep	GA	G	10: 45,158,314		probably null	Het
Prpf4b	G	A	13: 34,896,032	R793Q	probably damaging	Het
Rela	T	A	19: 5,647,338	N524K	probably damaging	Het
Rnaset2a	T	C	17: 8,141,648	D74G	probably damaging	Het
Sesn3	T	C	9: 14,321,253	F274S	possibly damaging	Het
Spag1	T	C	15: 36,195,407	Y249H	probably damaging	Het
Sstr1	A	T	12: 58,213,692	D367V	possibly damaging	Het
Tnnt1	T	C	7: 4,509,577	E110G	probably damaging	Het
Tpm1	T	A	9: 67,028,169		probably null	Het
Unc93b1	T	C	19: 3,944,105	V412A	probably benign	Het
Uox	G	C	3: 146,624,648		probably null	Het
Usp44	T	C	10: 93,846,008	Y107H	probably benign	Het

Other mutations in Serinc2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00913:Serinc2	APN	4	130264408	missense	possibly damaging	0.88
IGL02031:Serinc2	APN	4	130264444	nonsense	probably null
IGL02551:Serinc2	APN	4	130260774	missense	probably benign	0.01
R1455:Serinc2	UTSW	4	130264340	missense	probably damaging	0.96
R1520:Serinc2	UTSW	4	130260750	missense	probably benign	0.00
R2059:Serinc2	UTSW	4	130260785	missense	probably damaging	1.00
R2869:Serinc2	UTSW	4	130265212	missense	probably damaging	1.00
R2869:Serinc2	UTSW	4	130265212	missense	probably damaging	1.00
R3160:Serinc2	UTSW	4	130260735	missense	probably benign
R3162:Serinc2	UTSW	4	130260735	missense	probably benign
R4497:Serinc2	UTSW	4	130254054	missense	possibly damaging	0.67
R4735:Serinc2	UTSW	4	130263645	missense	probably benign	0.13
R4987:Serinc2	UTSW	4	130263027	splice site	probably null
R5569:Serinc2	UTSW	4	130278479	missense	probably benign	0.17
R5681:Serinc2	UTSW	4	130265076	missense	probably damaging	1.00
R5946:Serinc2	UTSW	4	130255521	missense	possibly damaging	0.91
R6898:Serinc2	UTSW	4	130255442	missense	probably benign	0.13
R7264:Serinc2	UTSW	4	130258259	missense	probably benign	0.00
R7526:Serinc2	UTSW	4	130258790	missense	probably benign	0.03
R7835:Serinc2	UTSW	4	130275487	missense	unknown
R8744:Serinc2	UTSW	4	130265195	start gained	probably benign
R8819:Serinc2	UTSW	4	130255379	missense	probably damaging	1.00
R8820:Serinc2	UTSW	4	130255379	missense	probably damaging	1.00
R9335:Serinc2	UTSW	4	130264427	missense	probably benign	0.01
R9419:Serinc2	UTSW	4	130255522	missense	probably damaging	0.99
R9542:Serinc2	UTSW	4	130258723	nonsense	probably null
R9688:Serinc2	UTSW	4	130264340	missense	probably damaging	0.96
Z1176:Serinc2	UTSW	4	130253995	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTCGTCTGGTCCATAGCATTG -3'
(R):5'- GCCCTCTGCTATCCTCAAAG -3'

Sequencing Primer
(F):5'- TGAAGATCTGAGTTCAATCCCCGG -3'
(R):5'- AAGTTCCCTGACTCGTAGATCCAG -3'

Posted On

2018-06-06