Incidental Mutation 'R6530:Nkd2'
| ID |
522285 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Nkd2
|
| Ensembl Gene |
ENSMUSG00000021567 |
| Gene Name |
naked cuticle 2 |
| Synonyms |
2210403L10Rik |
| MMRRC Submission |
044656-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R6530 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
13 |
| Chromosomal Location |
73966653-73995750 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to T
at 73970809 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glycine to Arginine
at position 258
(G258R)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000113794
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000022051]
[ENSMUST00000022051]
[ENSMUST00000118096]
[ENSMUST00000118096]
[ENSMUST00000222004]
|
| AlphaFold |
Q8VE28 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000022051
AA Change: G270R
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000022051
Gene: ENSMUSG00000021567
AA Change: G270R
| Domain | Start | End | E-Value | Type |
|---|
|
SCOP:d1alva_
|
133 |
160 |
7e-3 |
SMART |
|
low complexity region
|
341 |
358 |
N/A |
INTRINSIC |
|
low complexity region
|
380 |
390 |
N/A |
INTRINSIC |
|
low complexity region
|
441 |
459 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000022051
AA Change: G270R
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000022051
Gene: ENSMUSG00000021567
AA Change: G270R
| Domain | Start | End | E-Value | Type |
|---|
|
SCOP:d1alva_
|
133 |
160 |
7e-3 |
SMART |
|
low complexity region
|
341 |
358 |
N/A |
INTRINSIC |
|
low complexity region
|
380 |
390 |
N/A |
INTRINSIC |
|
low complexity region
|
441 |
459 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000118096
AA Change: G258R
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000113794
Gene: ENSMUSG00000021567
AA Change: G258R
| Domain | Start | End | E-Value | Type |
|---|
|
SCOP:d1alva_
|
121 |
148 |
7e-3 |
SMART |
|
low complexity region
|
329 |
346 |
N/A |
INTRINSIC |
|
low complexity region
|
368 |
378 |
N/A |
INTRINSIC |
|
low complexity region
|
429 |
447 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000118096
AA Change: G258R
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000113794
Gene: ENSMUSG00000021567
AA Change: G258R
| Domain | Start | End | E-Value | Type |
|---|
|
SCOP:d1alva_
|
121 |
148 |
7e-3 |
SMART |
|
low complexity region
|
329 |
346 |
N/A |
INTRINSIC |
|
low complexity region
|
368 |
378 |
N/A |
INTRINSIC |
|
low complexity region
|
429 |
447 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000138899
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000222004
|
| Meta Mutation Damage Score |
0.5948 |
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.5%
- 10x: 97.5%
- 20x: 92.1%
|
| Validation Efficiency |
100% (36/36) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of a family of proteins that function as negative regulators of Wnt receptor signaling through interaction with Dishevelled family members. The encoded protein participates in the delivery of transforming growth factor alpha-containing vesicles to the cell membrane. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Aug 2012]
PHENOTYPE: Mice homozygous for a reporter allele are viable and fertile but show a slight and background-sensitive reduction in average litter size relative to control mice. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acox3 |
T |
C |
5: 35,746,039 (GRCm39) |
L74P |
possibly damaging |
Het |
| Adamtsl4 |
T |
C |
3: 95,588,364 (GRCm39) |
T575A |
probably benign |
Het |
| Adck5 |
T |
G |
15: 76,478,047 (GRCm39) |
D224E |
probably benign |
Het |
| Asic4 |
A |
G |
1: 75,448,979 (GRCm39) |
N376S |
probably damaging |
Het |
| Atl3 |
T |
A |
19: 7,499,499 (GRCm39) |
D254E |
probably benign |
Het |
| Cacnb2 |
G |
T |
2: 14,979,978 (GRCm39) |
A274S |
probably damaging |
Het |
| Car2 |
T |
C |
3: 14,961,791 (GRCm39) |
V159A |
probably benign |
Het |
| Ccdc138 |
G |
C |
10: 58,380,790 (GRCm39) |
G474R |
probably damaging |
Het |
| Coq7 |
T |
C |
7: 118,124,558 (GRCm39) |
T203A |
probably benign |
Het |
| Dnah12 |
T |
C |
14: 26,456,865 (GRCm39) |
I877T |
probably damaging |
Het |
| Dnah7a |
C |
T |
1: 53,542,856 (GRCm39) |
R2438H |
probably benign |
Het |
| Efhc1 |
T |
A |
1: 21,031,366 (GRCm39) |
|
probably null |
Het |
| Fbn1 |
G |
A |
2: 125,231,190 (GRCm39) |
R459C |
probably damaging |
Het |
| Fer1l4 |
A |
G |
2: 155,889,785 (GRCm39) |
|
probably null |
Het |
| Gm5114 |
G |
A |
7: 39,057,514 (GRCm39) |
P702S |
probably damaging |
Het |
| Inpp5f |
T |
A |
7: 128,265,802 (GRCm39) |
Y182* |
probably null |
Het |
| Irf6 |
C |
T |
1: 192,839,657 (GRCm39) |
T44M |
probably damaging |
Het |
| Loxhd1 |
A |
G |
18: 77,499,847 (GRCm39) |
N87S |
probably benign |
Het |
| Mtrf1 |
A |
T |
14: 79,640,331 (GRCm39) |
Q162L |
possibly damaging |
Het |
| Myoz3 |
G |
T |
18: 60,712,592 (GRCm39) |
|
probably null |
Het |
| Ncbp2 |
CGTCTGGATG |
CG |
16: 31,775,161 (GRCm39) |
|
probably null |
Het |
| Or8k27 |
A |
C |
2: 86,275,826 (GRCm39) |
S167A |
probably benign |
Het |
| Parg |
T |
C |
14: 31,931,156 (GRCm39) |
S176P |
probably damaging |
Het |
| Prdm2 |
A |
C |
4: 142,860,617 (GRCm39) |
V891G |
probably benign |
Het |
| Rasl10a |
T |
A |
11: 5,008,367 (GRCm39) |
I21N |
probably damaging |
Het |
| Reg4 |
T |
C |
3: 98,132,148 (GRCm39) |
V20A |
probably benign |
Het |
| Shprh |
T |
A |
10: 11,070,011 (GRCm39) |
S1462R |
probably benign |
Het |
| Spmip1 |
G |
A |
6: 29,471,950 (GRCm39) |
|
probably null |
Het |
| Sult1e1 |
T |
C |
5: 87,724,147 (GRCm39) |
E270G |
probably benign |
Het |
| Trpm7 |
A |
C |
2: 126,654,631 (GRCm39) |
F1436V |
probably damaging |
Het |
| Ttc33 |
A |
G |
15: 5,241,603 (GRCm39) |
|
probably null |
Het |
| Ucp2 |
A |
T |
7: 100,147,430 (GRCm39) |
E161D |
probably benign |
Het |
| Vmn2r79 |
T |
C |
7: 86,651,252 (GRCm39) |
F217S |
possibly damaging |
Het |
| Wdr93 |
G |
A |
7: 79,405,741 (GRCm39) |
A207T |
probably damaging |
Het |
| Zbed6 |
A |
G |
1: 133,586,939 (GRCm39) |
S133P |
probably damaging |
Het |
| Zfp949 |
T |
C |
9: 88,449,340 (GRCm39) |
|
probably null |
Het |
|
| Other mutations in Nkd2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01583:Nkd2
|
APN |
13 |
73,969,599 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL03121:Nkd2
|
APN |
13 |
73,969,498 (GRCm39) |
missense |
probably benign |
0.11 |
|
R0635:Nkd2
|
UTSW |
13 |
73,975,013 (GRCm39) |
missense |
probably benign |
0.03 |
|
R4062:Nkd2
|
UTSW |
13 |
73,970,809 (GRCm39) |
missense |
probably null |
1.00 |
|
R4546:Nkd2
|
UTSW |
13 |
73,971,475 (GRCm39) |
missense |
probably benign |
0.02 |
|
R4724:Nkd2
|
UTSW |
13 |
73,995,124 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4934:Nkd2
|
UTSW |
13 |
73,970,841 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5051:Nkd2
|
UTSW |
13 |
73,973,195 (GRCm39) |
missense |
probably benign |
0.06 |
|
R5353:Nkd2
|
UTSW |
13 |
73,969,557 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6228:Nkd2
|
UTSW |
13 |
73,969,579 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6242:Nkd2
|
UTSW |
13 |
73,970,905 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7475:Nkd2
|
UTSW |
13 |
73,973,861 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7486:Nkd2
|
UTSW |
13 |
73,995,561 (GRCm39) |
splice site |
probably benign |
|
|
R7530:Nkd2
|
UTSW |
13 |
73,995,078 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R8271:Nkd2
|
UTSW |
13 |
73,969,437 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8336:Nkd2
|
UTSW |
13 |
73,969,192 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9288:Nkd2
|
UTSW |
13 |
73,995,177 (GRCm39) |
intron |
probably benign |
|
|
R9411:Nkd2
|
UTSW |
13 |
73,969,330 (GRCm39) |
missense |
probably benign |
0.10 |
|
R9766:Nkd2
|
UTSW |
13 |
73,995,131 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGAACCACCTTGCTTTCCAG -3'
(R):5'- TGCAAGCAGCCCTGTTATATG -3'
Sequencing Primer
(F):5'- GCCCCTTGCCAATGACAG -3'
(R):5'- GACTTAAAGTCTGGCCTTGAGC -3'
|
| Posted On |
2018-06-06 |
Incidental Mutation