Mutagenetix > Incidental Mutation

Incidental Mutation 'R6531:Cd200r4'

522384

Institutional Source

Beutler Lab

Gene Symbol

Cd200r4

Ensembl Gene

ENSMUSG00000062082

Gene Name

CD200 receptor 4

Synonyms

F630107N04Rik, MCD200RLa

MMRRC Submission

044657-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.054) question?

Stock #

R6531 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

44811733-44839150 bp(+) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 44833505 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 222 (Q222*)

Ref Sequence

ENSEMBL: ENSMUSP00000135299 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000114626] [ENSMUST00000176321] [ENSMUST00000176819]

AlphaFold

Q6XJV4

Predicted Effect

probably null
Transcript: ENSMUST00000114626
AA Change: Q222*

SMART Domains

Protein: ENSMUSP00000110273
Gene: ENSMUSG00000062082
AA Change: Q222*

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
IG	44	147	1.23e-3	SMART
Blast:IG_like	149	270	2e-68	BLAST

Predicted Effect

probably null
Transcript: ENSMUST00000176321
AA Change: Q176*

SMART Domains

Protein: ENSMUSP00000135162
Gene: ENSMUSG00000062082
AA Change: Q176*

Domain	Start	End	E-Value	Type
IG	1	101	1.97e0	SMART
Blast:IG_like	103	224	6e-69	BLAST

Predicted Effect

probably null
Transcript: ENSMUST00000176819
AA Change: Q222*

SMART Domains

Protein: ENSMUSP00000135299
Gene: ENSMUSG00000062082
AA Change: Q222*

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
IG	44	147	1.23e-3	SMART
Blast:IG_like	149	270	2e-68	BLAST

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.2%
20x: 90.6%

Validation Efficiency

100% (46/46)

Allele List at MGI

Other mutations in this stock

Total: 44 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930590J08Rik	A	G	6: 91,949,999	E880G	possibly damaging	Het
Acsbg2	T	A	17: 56,846,617	I529F	probably damaging	Het
Ahcyl2	T	G	6: 29,886,162	M359R	probably benign	Het
Aldh5a1	G	T	13: 24,918,564	D305E	probably benign	Het
Catsper2	C	G	2: 121,399,780	V358L	possibly damaging	Het
Col4a2	T	A	8: 11,408,135	D270E	probably benign	Het
Cux1	T	C	5: 136,275,119	D1401G	probably benign	Het
Cyp3a59	T	A	5: 146,098,217	M235K	probably benign	Het
Dock3	T	C	9: 106,967,216	D895G	probably benign	Het
Dusp27	A	T	1: 166,110,046		probably null	Het
Dync1h1	T	C	12: 110,617,920	F586L	probably damaging	Het
Elmo1	G	T	13: 20,572,446	R568L	possibly damaging	Het
Epb41	T	C	4: 131,957,636	T711A	probably benign	Het
Grm7	T	A	6: 111,358,425	M599K	probably benign	Het
Hivep3	A	T	4: 120,122,876	K1704*	probably null	Het
Ighv1-62-3	C	A	12: 115,461,006	C115F	probably damaging	Het
Krt78	A	G	15: 101,952,273	Y200H	probably benign	Het
Lamb2	A	T	9: 108,483,726	H549L	possibly damaging	Het
Mroh3	A	G	1: 136,184,353	I759T	probably benign	Het
Ncbp2	CGTCTGGATG	CG	16: 31,956,343		probably null	Het
Nol6	G	T	4: 41,118,154	P828T	probably benign	Het
Olfr1030	A	G	2: 85,984,307	I156V	probably benign	Het
Olfr1132	A	G	2: 87,635,529	Y73H	probably damaging	Het
Olfr1264	A	G	2: 90,021,457	V203A	probably benign	Het
Olfr344	G	A	2: 36,569,341	V248I	probably damaging	Het
Ovgp1	A	C	3: 105,987,071		probably benign	Het
Pitpnm3	T	A	11: 72,071,487	Q230L	possibly damaging	Het
Pkn1	C	T	8: 83,670,293	V910I	probably benign	Het
Plcb1	T	A	2: 135,325,802		probably null	Het
Ppp1r12c	A	G	7: 4,482,789		probably null	Het
Rassf5	T	A	1: 131,244,814	Q106L	possibly damaging	Het
Rfc1	T	C	5: 65,312,979	K62E	possibly damaging	Het
Sf3b1	C	T	1: 55,019,395	E12K	probably damaging	Het
Slc4a1ap	A	T	5: 31,548,638	D691V	probably benign	Het
Speg	T	A	1: 75,422,757	F2283I	probably benign	Het
Synj2	A	G	17: 6,033,839	K267E	probably damaging	Het
Tg	A	T	15: 66,839,362	Y991F	probably damaging	Het
Tlk1	A	T	2: 70,742,083	D380E	probably benign	Het
Trim43b	A	T	9: 89,085,365	L405H	probably damaging	Het
Ttf2	A	G	3: 100,956,260	I586T	probably damaging	Het
Ugt2b36	T	A	5: 87,081,586	R213S	probably damaging	Het
Vmn1r198	T	A	13: 22,354,407	M21K	probably benign	Het
Wdr35	A	T	12: 8,978,685	Y101F	probably benign	Het
Zfp367	T	C	13: 64,144,250	Y189C	probably damaging	Het

Other mutations in Cd200r4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02996:Cd200r4	APN	16	44833033	missense	probably benign	0.08
IGL03328:Cd200r4	APN	16	44833519	missense	possibly damaging	0.91
H8562:Cd200r4	UTSW	16	44833373	missense	possibly damaging	0.62
H8786:Cd200r4	UTSW	16	44833373	missense	possibly damaging	0.62
R1163:Cd200r4	UTSW	16	44838020	missense	probably benign	0.03
R1168:Cd200r4	UTSW	16	44832944	missense	probably damaging	1.00
R1502:Cd200r4	UTSW	16	44833440	missense	probably damaging	1.00
R1536:Cd200r4	UTSW	16	44833049	missense	possibly damaging	0.95
R2237:Cd200r4	UTSW	16	44820897	start codon destroyed	probably null	1.00
R2239:Cd200r4	UTSW	16	44820897	start codon destroyed	probably null	1.00
R2899:Cd200r4	UTSW	16	44833365	missense	probably damaging	1.00
R3824:Cd200r4	UTSW	16	44820950	missense	probably benign	0.00
R3825:Cd200r4	UTSW	16	44820950	missense	probably benign	0.00
R4295:Cd200r4	UTSW	16	44832876	missense	probably damaging	0.99
R5254:Cd200r4	UTSW	16	44832090	missense	possibly damaging	0.86
R5683:Cd200r4	UTSW	16	44832948	missense	probably benign	0.01
R5979:Cd200r4	UTSW	16	44832932	missense	probably benign	0.14
R7205:Cd200r4	UTSW	16	44833166	missense	probably damaging	1.00
R7583:Cd200r4	UTSW	16	44833421	missense	probably damaging	1.00
R8157:Cd200r4	UTSW	16	44833141	missense	probably damaging	1.00
R9576:Cd200r4	UTSW	16	44837975	missense
R9739:Cd200r4	UTSW	16	44820779	start gained	probably benign
X0063:Cd200r4	UTSW	16	44820906	missense	possibly damaging	0.95

Predicted Primers

PCR Primer
(F):5'- CAGAACTGCAGTCTGTGAGG -3'
(R):5'- AGTCTGCTGAGCTAGAAAACAG -3'

Sequencing Primer
(F):5'- ACTGCAGTCTGTGAGGCAATG -3'
(R):5'- GAAAACAGCTTCATGTTTTCTGC -3'

Posted On

2018-06-06