Mutagenetix > Incidental Mutation

Incidental Mutation 'R6218:Gm10549'

523296

Institutional Source

Beutler Lab

Gene Symbol

Gm10549

Ensembl Gene

ENSMUSG00000073610

Gene Name

predicted gene 10549

Synonyms

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.058) question?

Stock #

R6218 (G1)

Quality Score

67.0074

Status

Validated

Chromosome

Chromosomal Location

33597216-33607763 bp(+) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

C to A at 33597358 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000127787 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000051087] [ENSMUST00000097634] [ENSMUST00000168890] [ENSMUST00000171533]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000051087

SMART Domains

Protein: ENSMUSP00000058132
Gene: ENSMUSG00000042834

Domain	Start	End	E-Value	Type
Pfam:Alveol-reg_P311	1	68	2.6e-41	PFAM

Predicted Effect

unknown
Transcript: ENSMUST00000097634
AA Change: A48D

SMART Domains

Protein: ENSMUSP00000095236
Gene: ENSMUSG00000073610
AA Change: A48D

Domain	Start	End	E-Value	Type
low complexity region	56	79	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000168890

SMART Domains

Protein: ENSMUSP00000130297
Gene: ENSMUSG00000042834

Domain	Start	End	E-Value	Type
Pfam:Alveol-reg_P311	1	68	2.6e-41	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000171533

SMART Domains

Protein: ENSMUSP00000127787
Gene: ENSMUSG00000042834

Domain	Start	End	E-Value	Type
Pfam:Alveol-reg_P311	1	68	2.6e-41	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.5%

Validation Efficiency

100% (65/65)

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2300003K06Rik	G	T	11: 99,728,730 (GRCm39)	Q38K	probably benign	Het
9930111J21Rik2	A	T	11: 48,910,134 (GRCm39)	N766K	probably benign	Het
Adam15	A	C	3: 89,251,190 (GRCm39)	I505S	probably benign	Het
Apc2	T	C	10: 80,142,254 (GRCm39)	M391T	probably damaging	Het
Arsi	G	A	18: 61,049,723 (GRCm39)	G202E	probably benign	Het
Bclaf1	A	G	10: 20,210,374 (GRCm39)	S840G	probably benign	Het
Cacna2d4	A	G	6: 119,216,021 (GRCm39)	Y96C	probably damaging	Het
Cald1	CAAAA	CAAA	6: 34,724,863 (GRCm39)		probably null	Het
Ddhd1	A	G	14: 45,851,633 (GRCm39)	L141P	probably damaging	Het
Dnaaf3	A	T	7: 4,526,671 (GRCm39)	S469T	probably benign	Het
Dzip3	A	T	16: 48,778,828 (GRCm39)	M323K	possibly damaging	Het
Eci2	T	A	13: 35,177,048 (GRCm39)		probably null	Het
Fam227b	A	T	2: 125,968,882 (GRCm39)	V64E	probably damaging	Het
Galnt2	A	G	8: 125,070,054 (GRCm39)	I524V	probably benign	Het
Gm3443	T	A	19: 21,533,110 (GRCm39)	S25T	probably damaging	Het
Gpr22	T	A	12: 31,761,616 (GRCm39)	K14*	probably null	Het
Grip1	T	C	10: 119,822,251 (GRCm39)	S405P	possibly damaging	Het
Helz2	T	C	2: 180,877,738 (GRCm39)	H1020R	probably damaging	Het
Helz2	C	A	2: 180,874,087 (GRCm39)	V2136L	probably benign	Het
Il36rn	G	A	2: 24,167,502 (GRCm39)		probably benign	Het
Iqsec1	T	A	6: 90,666,617 (GRCm39)	S607C	probably damaging	Het
Irag1	G	A	7: 110,476,112 (GRCm39)	T819M	probably benign	Het
Klhl2	A	T	8: 65,205,801 (GRCm39)	Y373*	probably null	Het
L3mbtl3	T	C	10: 26,168,645 (GRCm39)	I595V	unknown	Het
Large2	T	C	2: 92,200,981 (GRCm39)	D65G	probably damaging	Het
Lrrfip1	T	C	1: 91,009,881 (GRCm39)	Y122H	probably damaging	Het
Map1b	A	T	13: 99,569,714 (GRCm39)	D1002E	unknown	Het
Mink1	C	T	11: 70,489,720 (GRCm39)	T59I	possibly damaging	Het
Myo7b	T	C	18: 32,092,507 (GRCm39)	N2097D	probably benign	Het
Nbea	C	A	3: 55,535,905 (GRCm39)	C2893F	probably damaging	Het
Nlgn1	A	T	3: 25,490,257 (GRCm39)	V490E	probably damaging	Het
Or2w1b	G	A	13: 21,300,401 (GRCm39)	E180K	probably damaging	Het
Or2y3	A	G	17: 38,393,620 (GRCm39)	M83T	probably damaging	Het
Or4c123	G	T	2: 89,127,306 (GRCm39)	H103N	probably damaging	Het
Or4f62	T	C	2: 111,986,701 (GRCm39)	I135T	probably damaging	Het
Or4k2	C	A	14: 50,424,135 (GRCm39)	D180Y	probably damaging	Het
Pctp	A	G	11: 89,878,144 (GRCm39)	I130T	probably benign	Het
Pdcl3	T	C	1: 39,027,152 (GRCm39)		probably null	Het
Pheta2	T	A	15: 82,227,917 (GRCm39)	H145Q	probably benign	Het
Pira12	A	T	7: 3,897,031 (GRCm39)	S602T	possibly damaging	Het
Pkp1	T	C	1: 135,807,646 (GRCm39)	K541E	probably damaging	Het
Plekhh2	G	A	17: 84,898,992 (GRCm39)	V990I	probably benign	Het
Ppp1r3a	A	T	6: 14,718,430 (GRCm39)	V828D	probably damaging	Het
Prrc2b	T	C	2: 32,098,823 (GRCm39)	Y712H	probably damaging	Het
Prune2	T	C	19: 17,098,926 (GRCm39)	S1477P	probably benign	Het
Psma5	A	G	3: 108,187,118 (GRCm39)	K239R	probably benign	Het
Rhobtb1	G	C	10: 69,106,286 (GRCm39)	A284P	probably benign	Het
Samsn1	G	A	16: 75,742,162 (GRCm39)		noncoding transcript	Het
Scel	A	G	14: 103,809,478 (GRCm39)	T273A	probably benign	Het
Slc22a5	T	A	11: 53,782,444 (GRCm39)		probably benign	Het
Slc25a37	A	T	14: 69,486,953 (GRCm39)	M110K	possibly damaging	Het
Slc6a2	A	T	8: 93,708,609 (GRCm39)	M242L	probably benign	Het
Slc8a3	C	A	12: 81,246,341 (GRCm39)	W904L	probably benign	Het
Ss18l1	G	A	2: 179,696,905 (GRCm39)	V109I	probably benign	Het
Tbx5	C	T	5: 119,991,663 (GRCm39)	H245Y	probably damaging	Het
Thumpd2	C	A	17: 81,360,342 (GRCm39)	L244F	probably damaging	Het
Tmem107	T	A	11: 68,962,241 (GRCm39)	V66E	probably damaging	Het
Tnr	T	C	1: 159,715,884 (GRCm39)	V882A	possibly damaging	Het
Top2b	T	G	14: 16,409,189 (GRCm38)	I777M	probably damaging	Het
Ttbk1	A	G	17: 46,781,733 (GRCm39)	V340A	possibly damaging	Het
Veph1	T	C	3: 66,162,481 (GRCm39)	E59G	probably damaging	Het
Vmn1r234	T	A	17: 21,449,983 (GRCm39)	M299K	possibly damaging	Het
Vps13b	T	C	15: 35,770,610 (GRCm39)	Y2018H	probably benign	Het
Zbtb11	A	G	16: 55,818,436 (GRCm39)	E620G	probably benign	Het
Zfp418	A	G	7: 7,185,627 (GRCm39)	H530R	possibly damaging	Het
Zfp764l1	C	T	7: 126,992,581 (GRCm39)	A10T	possibly damaging	Het

Other mutations in Gm10549

Allele	Source	Chr	Coord	Type	Predicted Effect
IGL02648:Gm10549	APN	18	33,597,303 (GRCm39)	unclassified	probably benign
R0374:Gm10549	UTSW	18	33,597,235 (GRCm39)	unclassified	probably benign
R0668:Gm10549	UTSW	18	33,603,903 (GRCm39)	missense	unknown
R1806:Gm10549	UTSW	18	33,603,841 (GRCm39)	missense	unknown
R4214:Gm10549	UTSW	18	33,597,530 (GRCm39)	splice site	probably null
R4826:Gm10549	UTSW	18	33,603,838 (GRCm39)	missense	unknown
R5747:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R5748:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R5766:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R5796:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6101:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6129:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6130:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6219:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6220:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6283:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6298:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6299:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6309:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6321:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6322:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6327:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6337:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6405:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6420:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6492:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6494:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R6505:Gm10549	UTSW	18	33,597,358 (GRCm39)	unclassified	probably benign
R7173:Gm10549	UTSW	18	33,597,462 (GRCm39)	missense	unknown
R7724:Gm10549	UTSW	18	33,603,912 (GRCm39)	nonsense	probably null
R7829:Gm10549	UTSW	18	33,597,463 (GRCm39)	unclassified	probably benign
R9356:Gm10549	UTSW	18	33,597,375 (GRCm39)	missense	unknown
R9358:Gm10549	UTSW	18	33,597,375 (GRCm39)	missense	unknown
R9359:Gm10549	UTSW	18	33,597,375 (GRCm39)	missense	unknown
R9584:Gm10549	UTSW	18	33,597,375 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- TAATAATAAACCTGCGGCCGGG -3'
(R):5'- GGGCTGAGAACTTTGAAAGC -3'

Sequencing Primer
(F):5'- CGGGGCATCTGAGGGAAC -3'
(R):5'- TAGCGTCTCCGGTTGCAC -3'

Posted On

2018-06-18