Mutagenetix > Incidental Mutation

Incidental Mutation 'R6631:Zfp558'

525138

Institutional Source

Beutler Lab

Gene Symbol

Zfp558

Ensembl Gene

ENSMUSG00000074500

Gene Name

zinc finger protein 558

Synonyms

Zfp558-ps, 1700007A21Rik, 4932704I17Rik

MMRRC Submission

044753-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6631 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

18366871-18389564 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to A at 18368219 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Stop codon at position 190 (G190*)

Ref Sequence

ENSEMBL: ENSMUSP00000132305 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034647] [ENSMUST00000159596]

AlphaFold

E9Q1J0

Predicted Effect

probably null
Transcript: ENSMUST00000034647
AA Change: G190*

SMART Domains

Protein: ENSMUSP00000132305
Gene: ENSMUSG00000074500
AA Change: G190*

Domain	Start	End	E-Value	Type
KRAB	43	103	2.52e-29	SMART
ZnF_C2H2	156	178	1.45e-2	SMART
ZnF_C2H2	184	206	2.79e-4	SMART
ZnF_C2H2	212	234	6.52e-5	SMART
ZnF_C2H2	240	262	2.02e-1	SMART
ZnF_C2H2	269	291	5.14e-3	SMART
ZnF_C2H2	297	319	5.21e-4	SMART
ZnF_C2H2	325	347	1.3e-4	SMART
ZnF_C2H2	353	375	2.99e-4	SMART
ZnF_C2H2	381	403	3.39e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000159596

SMART Domains

Protein: ENSMUSP00000126946
Gene: ENSMUSG00000074500

Domain	Start	End	E-Value	Type
KRAB	43	100	1.24e-19	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000162441

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174973

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.0%
20x: 93.9%

Validation Efficiency

96% (50/52)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931406C07Rik	A	T	9: 15,203,326 (GRCm39)	N159K	probably damaging	Het
Arhgef10l	T	C	4: 140,245,058 (GRCm39)		probably benign	Het
Atosa	A	G	9: 74,861,107 (GRCm39)	D4G	possibly damaging	Het
Avil	A	G	10: 126,843,618 (GRCm39)	S153G	possibly damaging	Het
C2cd3	G	A	7: 100,067,747 (GRCm39)	D877N	probably damaging	Het
Clca3a2	G	A	3: 144,519,405 (GRCm39)	A257V	probably benign	Het
Cramp1	T	A	17: 25,202,931 (GRCm39)	H366L	probably benign	Het
Cyp2c37	C	T	19: 39,998,287 (GRCm39)	S393L	probably damaging	Het
Defb8	T	A	8: 19,495,950 (GRCm39)	I37L	probably benign	Het
Dennd4b	C	A	3: 90,185,039 (GRCm39)		probably null	Het
Eps8l2	G	A	7: 140,936,115 (GRCm39)	R223H	probably damaging	Het
Erbin	A	G	13: 103,961,400 (GRCm39)	L1302P	probably benign	Het
Exoc3l	A	G	8: 106,021,993 (GRCm39)	W37R	probably damaging	Het
Fap	T	C	2: 62,333,725 (GRCm39)	N668S	probably damaging	Het
Gas7	A	G	11: 67,565,107 (GRCm39)	N250S	probably damaging	Het
H2bc12	T	A	13: 22,220,391 (GRCm39)	V112E	probably damaging	Het
Hivep1	C	A	13: 42,309,956 (GRCm39)	P732Q	probably damaging	Het
Irx4	G	T	13: 73,416,545 (GRCm39)	A314S	probably benign	Het
Itgb8	A	T	12: 119,144,712 (GRCm39)	L332*	probably null	Het
Kctd19	A	G	8: 106,111,960 (GRCm39)		probably null	Het
Kif14	G	A	1: 136,443,697 (GRCm39)	S1290N	probably benign	Het
Klk1b3	C	T	7: 43,850,888 (GRCm39)	T140I	probably benign	Het
Lama1	A	G	17: 68,081,477 (GRCm39)	N1305D	probably benign	Het
Lrp1	A	T	10: 127,410,201 (GRCm39)	V1515E	probably damaging	Het
Man2b1	A	G	8: 85,813,440 (GRCm39)		probably null	Het
Mocos	A	G	18: 24,832,988 (GRCm39)	T818A	probably benign	Het
Mpc2	G	T	1: 165,307,081 (GRCm39)	W94L	probably benign	Het
Mrc1	G	A	2: 14,243,296 (GRCm39)	V141I	probably benign	Het
Nalcn	T	C	14: 123,697,663 (GRCm39)	T538A	probably benign	Het
Ndufs3	G	A	2: 90,732,744 (GRCm39)	T114M	probably damaging	Het
Noct	T	C	3: 51,157,621 (GRCm39)	C320R	probably damaging	Het
Or5b117	T	A	19: 13,431,185 (GRCm39)	Q232L	probably benign	Het
Pcdha11	G	T	18: 37,138,844 (GRCm39)	A158S	probably damaging	Het
Pcdhga8	T	A	18: 37,860,109 (GRCm39)	D388E	probably benign	Het
Peg3	T	C	7: 6,712,069 (GRCm39)	E1051G	possibly damaging	Het
Phlda2	T	A	7: 143,055,918 (GRCm39)	I104F	probably damaging	Het
Polr2a	A	G	11: 69,626,339 (GRCm39)	S1604P	possibly damaging	Het
Pomt2	C	T	12: 87,186,417 (GRCm39)		probably null	Het
Ppp6r2	G	A	15: 89,137,458 (GRCm39)		probably null	Het
Prdm2	T	G	4: 142,861,454 (GRCm39)	Q612P	probably benign	Het
Prr5	C	A	15: 84,586,978 (GRCm39)	R243S	probably damaging	Het
Ptgdr2	T	C	19: 10,918,233 (GRCm39)	I250T	probably benign	Het
Rad54l2	A	T	9: 106,590,739 (GRCm39)	C462*	probably null	Het
Sec16a	T	A	2: 26,329,969 (GRCm39)	E682V	probably damaging	Het
Serpina3i	A	G	12: 104,232,725 (GRCm39)	D210G	probably damaging	Het
Slain2	T	A	5: 73,114,748 (GRCm39)	D326E	probably benign	Het
Sned1	A	G	1: 93,209,374 (GRCm39)	E829G	probably damaging	Het
Steap4	G	A	5: 8,026,995 (GRCm39)	W319*	probably null	Het
Taar8c	A	G	10: 23,977,701 (GRCm39)	V37A	probably benign	Het
Tdrd12	T	A	7: 35,184,654 (GRCm39)	Y753F	probably damaging	Het
Tnxb	A	G	17: 34,937,222 (GRCm39)	S3770G	probably damaging	Het
Trrap	A	G	5: 144,708,460 (GRCm39)	N48S	possibly damaging	Het

Other mutations in Zfp558

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00532:Zfp558	APN	9	18,367,883 (GRCm39)	missense	possibly damaging	0.72
IGL00722:Zfp558	APN	9	18,367,817 (GRCm39)	missense	probably damaging	0.97
R0270:Zfp558	UTSW	9	18,379,252 (GRCm39)	missense	probably damaging	1.00
R0708:Zfp558	UTSW	9	18,368,123 (GRCm39)	missense	possibly damaging	0.75
R1521:Zfp558	UTSW	9	18,367,859 (GRCm39)	missense	possibly damaging	0.86
R1618:Zfp558	UTSW	9	18,380,579 (GRCm39)	missense	possibly damaging	0.73
R2323:Zfp558	UTSW	9	18,380,573 (GRCm39)	critical splice donor site	probably null
R2939:Zfp558	UTSW	9	18,367,924 (GRCm39)	missense	possibly damaging	0.71
R4537:Zfp558	UTSW	9	18,368,798 (GRCm39)	missense	probably null	0.72
R4569:Zfp558	UTSW	9	18,367,799 (GRCm39)	missense	possibly damaging	0.72
R4570:Zfp558	UTSW	9	18,367,799 (GRCm39)	missense	possibly damaging	0.72
R4571:Zfp558	UTSW	9	18,367,799 (GRCm39)	missense	possibly damaging	0.72
R4619:Zfp558	UTSW	9	18,367,577 (GRCm39)	missense	possibly damaging	0.96
R5207:Zfp558	UTSW	9	18,368,296 (GRCm39)	missense	possibly damaging	0.93
R5530:Zfp558	UTSW	9	18,367,669 (GRCm39)	missense	probably benign	0.05
R7892:Zfp558	UTSW	9	18,379,993 (GRCm39)	missense	possibly damaging	0.73
R8309:Zfp558	UTSW	9	18,368,213 (GRCm39)	missense	probably benign	0.02
R9006:Zfp558	UTSW	9	18,367,776 (GRCm39)	missense	possibly damaging	0.86

Predicted Primers

PCR Primer
(F):5'- GTACTGAAGGCTTTTCCACACTG -3'
(R):5'- AGAGGGAATCTTATTATAGCATGGC -3'

Sequencing Primer
(F):5'- TGAAGGCTTTTCCACACTGAGAAC -3'
(R):5'- CAGGAAAGAGGTCATCATG -3'

Posted On

2018-06-22