Incidental Mutation 'R6577:Lmln'
| ID |
526368 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Lmln
|
| Ensembl Gene |
ENSMUSG00000022802 |
| Gene Name |
leishmanolysin-like (metallopeptidase M8 family) |
| Synonyms |
5330415H22Rik |
| MMRRC Submission |
044701-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.195)
|
| Stock # |
R6577 (G1)
|
| Quality Score |
119.008 |
|
Status
|
Not validated
|
| Chromosome |
16 |
| Chromosomal Location |
32882891-32948065 bp(+) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
T to A
at 32927370 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000023497
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000023497]
[ENSMUST00000023497]
[ENSMUST00000023497]
|
| AlphaFold |
Q8BMN4 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000023497
|
| SMART Domains |
Protein: ENSMUSP00000023497
Gene: ENSMUSG00000022802
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
42 |
N/A |
INTRINSIC |
|
Pfam:Peptidase_M8
|
154 |
289 |
3.9e-16 |
PFAM |
|
Pfam:Peptidase_M8
|
295 |
633 |
5.2e-54 |
PFAM |
|
transmembrane domain
|
658 |
680 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000023497
|
| SMART Domains |
Protein: ENSMUSP00000023497
Gene: ENSMUSG00000022802
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
42 |
N/A |
INTRINSIC |
|
Pfam:Peptidase_M8
|
154 |
289 |
3.9e-16 |
PFAM |
|
Pfam:Peptidase_M8
|
295 |
633 |
5.2e-54 |
PFAM |
|
transmembrane domain
|
658 |
680 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000023497
|
| SMART Domains |
Protein: ENSMUSP00000023497
Gene: ENSMUSG00000022802
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
42 |
N/A |
INTRINSIC |
|
Pfam:Peptidase_M8
|
154 |
289 |
3.9e-16 |
PFAM |
|
Pfam:Peptidase_M8
|
295 |
633 |
5.2e-54 |
PFAM |
|
transmembrane domain
|
658 |
680 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000105610
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000153549
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000158235
|
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.5%
- 10x: 97.6%
- 20x: 93.1%
|
| Validation Efficiency |
97% (38/39) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a zinc-metallopeptidase. The encoded protein may play a role in cell migration and invasion. Studies of a similar protein in Drosophila indicate a potential role in mitotic progression. Alternatively spliced transcript variants have been described. [provided by RefSeq, Feb 2009]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 41 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Api5 |
T |
C |
2: 94,252,726 (GRCm39) |
Y348C |
probably benign |
Het |
| Ark2n |
T |
C |
18: 77,740,855 (GRCm39) |
T285A |
probably benign |
Het |
| Arl14 |
A |
G |
3: 69,130,405 (GRCm39) |
E184G |
probably benign |
Het |
| Asap3 |
T |
C |
4: 135,965,541 (GRCm39) |
|
probably null |
Het |
| Atp11b |
T |
A |
3: 35,893,311 (GRCm39) |
V36E |
probably damaging |
Het |
| Atp13a4 |
C |
T |
16: 29,298,659 (GRCm39) |
S100N |
probably benign |
Het |
| Cd27 |
T |
C |
6: 125,213,756 (GRCm39) |
T34A |
probably benign |
Het |
| Clec10a |
T |
C |
11: 70,061,436 (GRCm39) |
S274P |
probably benign |
Het |
| Cntnap2 |
C |
T |
6: 46,147,206 (GRCm39) |
T484I |
probably benign |
Het |
| Cpsf1 |
CCCCTGCATGAGGCAGGTCCC |
CCCC |
15: 76,481,655 (GRCm39) |
|
probably null |
Het |
| Cracd |
A |
T |
5: 77,013,947 (GRCm39) |
|
probably benign |
Het |
| Def8 |
T |
C |
8: 124,183,449 (GRCm39) |
S304P |
probably benign |
Het |
| Dgkd |
G |
A |
1: 87,867,962 (GRCm39) |
V299M |
probably damaging |
Het |
| Ephb2 |
T |
C |
4: 136,384,861 (GRCm39) |
D850G |
probably damaging |
Het |
| Gjd3 |
T |
C |
11: 102,691,130 (GRCm39) |
N291S |
possibly damaging |
Het |
| Hc |
T |
C |
2: 34,922,138 (GRCm39) |
I563V |
probably benign |
Het |
| Hells |
C |
T |
19: 38,919,909 (GRCm39) |
Q20* |
probably null |
Het |
| Hid1 |
G |
C |
11: 115,245,462 (GRCm39) |
P448A |
possibly damaging |
Het |
| Igkv8-24 |
C |
T |
6: 70,193,947 (GRCm39) |
R87H |
possibly damaging |
Het |
| Irf6 |
A |
G |
1: 192,851,662 (GRCm39) |
S418G |
probably damaging |
Het |
| Kcnv2 |
T |
A |
19: 27,301,420 (GRCm39) |
C424S |
possibly damaging |
Het |
| Myo1a |
A |
T |
10: 127,551,189 (GRCm39) |
I678F |
possibly damaging |
Het |
| Nup98 |
A |
C |
7: 101,778,053 (GRCm39) |
|
probably null |
Het |
| Papolg |
GGACTTGGGATACTTACGCTTTG |
GG |
11: 23,829,857 (GRCm39) |
|
probably benign |
Het |
| Ppfibp1 |
T |
A |
6: 146,901,153 (GRCm39) |
|
probably null |
Het |
| Sardh |
T |
C |
2: 27,108,867 (GRCm39) |
T623A |
possibly damaging |
Het |
| Scml4 |
A |
G |
10: 42,823,107 (GRCm39) |
N251D |
probably damaging |
Het |
| Skap1 |
T |
C |
11: 96,416,870 (GRCm39) |
Y52H |
probably damaging |
Het |
| Srp68 |
G |
A |
11: 116,156,290 (GRCm39) |
R113W |
probably damaging |
Het |
| Srsf12 |
T |
C |
4: 33,209,196 (GRCm39) |
|
probably benign |
Het |
| Stat5b |
A |
G |
11: 100,688,526 (GRCm39) |
M312T |
probably benign |
Het |
| Tma7 |
T |
C |
9: 108,911,262 (GRCm39) |
|
probably benign |
Het |
| Tmem120b |
T |
G |
5: 123,254,710 (GRCm39) |
F304V |
probably damaging |
Het |
| Tns3 |
G |
A |
11: 8,499,057 (GRCm39) |
L9F |
probably damaging |
Het |
| Tns3 |
G |
T |
11: 8,499,058 (GRCm39) |
D8E |
probably damaging |
Het |
| Tsc2 |
C |
T |
17: 24,829,473 (GRCm39) |
A765T |
probably damaging |
Het |
| Tut7 |
C |
T |
13: 59,955,975 (GRCm39) |
C45Y |
probably damaging |
Het |
| Uba1y |
A |
G |
Y: 825,465 (GRCm39) |
I276V |
probably benign |
Homo |
| Upb1 |
T |
G |
10: 75,248,723 (GRCm39) |
L81R |
probably damaging |
Het |
| Uros |
C |
A |
7: 133,302,569 (GRCm39) |
C73F |
probably damaging |
Het |
| Zfp820 |
T |
C |
17: 22,038,384 (GRCm39) |
I315V |
probably benign |
Het |
|
| Other mutations in Lmln |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00504:Lmln
|
APN |
16 |
32,903,435 (GRCm39) |
missense |
probably benign |
0.08 |
|
IGL01346:Lmln
|
APN |
16 |
32,937,490 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01664:Lmln
|
APN |
16 |
32,901,357 (GRCm39) |
missense |
probably benign |
0.03 |
|
nemeth
|
UTSW |
16 |
32,894,467 (GRCm39) |
nonsense |
probably null |
|
|
R0234:Lmln
|
UTSW |
16 |
32,886,694 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0234:Lmln
|
UTSW |
16 |
32,886,694 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0562:Lmln
|
UTSW |
16 |
32,937,455 (GRCm39) |
nonsense |
probably null |
|
|
R1017:Lmln
|
UTSW |
16 |
32,908,546 (GRCm39) |
missense |
probably benign |
|
|
R1557:Lmln
|
UTSW |
16 |
32,908,581 (GRCm39) |
missense |
probably benign |
0.25 |
|
R1617:Lmln
|
UTSW |
16 |
32,937,500 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2211:Lmln
|
UTSW |
16 |
32,930,148 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4061:Lmln
|
UTSW |
16 |
32,886,761 (GRCm39) |
nonsense |
probably null |
|
|
R4414:Lmln
|
UTSW |
16 |
32,930,220 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4512:Lmln
|
UTSW |
16 |
32,908,507 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4564:Lmln
|
UTSW |
16 |
32,930,226 (GRCm39) |
missense |
probably benign |
0.09 |
|
R4995:Lmln
|
UTSW |
16 |
32,894,467 (GRCm39) |
nonsense |
probably null |
|
|
R5044:Lmln
|
UTSW |
16 |
32,894,550 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R6109:Lmln
|
UTSW |
16 |
32,889,481 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R6287:Lmln
|
UTSW |
16 |
32,894,555 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6689:Lmln
|
UTSW |
16 |
32,925,152 (GRCm39) |
missense |
probably benign |
0.19 |
|
R7079:Lmln
|
UTSW |
16 |
32,887,661 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7432:Lmln
|
UTSW |
16 |
32,909,738 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7807:Lmln
|
UTSW |
16 |
32,927,501 (GRCm39) |
missense |
probably benign |
0.04 |
|
R8185:Lmln
|
UTSW |
16 |
32,909,690 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8942:Lmln
|
UTSW |
16 |
32,901,330 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9123:Lmln
|
UTSW |
16 |
32,930,202 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9365:Lmln
|
UTSW |
16 |
32,925,169 (GRCm39) |
nonsense |
probably null |
|
|
R9491:Lmln
|
UTSW |
16 |
32,890,358 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
| Predicted Primers |
|
| Posted On |
2018-06-25 |
Incidental Mutation