Incidental Mutation 'R6694:Sit1'
ID 528485
Institutional Source Beutler Lab
Gene Symbol Sit1
Ensembl Gene ENSMUSG00000028460
Gene Name suppression inducing transmembrane adaptor 1
Synonyms Sit
MMRRC Submission
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.065) question?
Stock # R6694 (G1)
Quality Score 225.009
Status Validated
Chromosome 4
Chromosomal Location 43482081-43483734 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) C to T at 43483311 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Glycine to Aspartic acid at position 51 (G51D)
Ref Sequence ENSEMBL: ENSMUSP00000030180 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000030180]
AlphaFold Q8C503
Predicted Effect probably damaging
Transcript: ENSMUST00000030180
AA Change: G51D

PolyPhen 2 Score 0.966 (Sensitivity: 0.77; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000030180
Gene: ENSMUSG00000028460
AA Change: G51D

DomainStartEndE-ValueType
transmembrane domain 23 45 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000123526
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 98.5%
  • 20x: 95.7%
Validation Efficiency 95% (41/43)
MGI Phenotype PHENOTYPE: Homozygous null mice exhibit altered T-cell development, thymus hyperplasia, decreased lymph node cellularity and are more susceptible to develop experimental autoimmune encephalomyelitis. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 41 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1600015I10Rik G A 6: 48,930,546 S160N probably benign Het
4930444G20Rik T C 10: 22,067,721 E120G probably damaging Het
Arap3 A C 18: 37,991,537 probably null Het
Arhgap10 A G 8: 77,411,063 F300L probably benign Het
Ccdc116 T C 16: 17,142,791 E54G probably benign Het
Cd53 T A 3: 106,767,386 I122F probably benign Het
Ctnnd1 T C 2: 84,624,505 probably benign Het
Ddx60 A G 8: 62,037,070 D1691G probably damaging Het
Dnah11 T C 12: 118,186,882 probably null Het
Exoc1 T A 5: 76,549,552 M392K probably damaging Het
Exoc3l G C 8: 105,290,490 R622G probably benign Het
Grid2 C G 6: 63,931,047 R224G possibly damaging Het
Kif20a A G 18: 34,625,526 E16G probably damaging Het
Kit T C 5: 75,640,757 V568A possibly damaging Het
Lhx4 T C 1: 155,704,710 S257G probably benign Het
Med18 C T 4: 132,459,982 V114I probably benign Het
Mrps30 C T 13: 118,386,961 V92M possibly damaging Het
Mtrr C T 13: 68,564,333 V645I probably benign Het
Nuak2 T G 1: 132,332,310 S609A probably damaging Het
Olfr1393 A T 11: 49,280,552 I135F probably benign Het
Plk4 T C 3: 40,801,828 V58A probably damaging Het
Polq T A 16: 37,015,173 F145L probably null Het
Rab11fip2 T C 19: 59,937,275 K170R probably damaging Het
Rapgef3 A G 15: 97,759,984 V246A probably benign Het
Rc3h2 A G 2: 37,400,543 S316P probably damaging Het
Rsf1 ATGGCG ATGGCGACGGTGGCG 7: 97,579,904 probably benign Homo
Rsf1 GCGGCGGC GCGGCGGCGACGGCGGC 7: 97,579,928 probably benign Het
Sae1 G T 7: 16,368,536 A171E probably damaging Het
Setd5 T A 6: 113,143,708 N959K probably benign Het
Siae T A 9: 37,616,823 Y31N probably damaging Het
Slc5a11 A G 7: 123,267,789 I436V possibly damaging Het
Tcfl5 A G 2: 180,622,654 S470P probably damaging Het
Timd2 A T 11: 46,670,952 C288* probably null Het
Timeless T G 10: 128,239,999 probably null Het
Ubxn8 G T 8: 33,621,544 Q274K possibly damaging Het
Usp29 A G 7: 6,962,277 E373G probably benign Het
Zap70 A G 1: 36,782,517 Y597C probably damaging Het
Zfp523 T G 17: 28,200,472 Y195D probably damaging Het
Zfp74 G A 7: 29,935,134 A383V probably damaging Het
Zfp93 A T 7: 24,275,913 Q441L probably damaging Het
Zfp976 A T 7: 42,614,186 Y76N probably damaging Het
Other mutations in Sit1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02859:Sit1 APN 4 43482831 missense probably benign 0.01
R0324:Sit1 UTSW 4 43482815 nonsense probably null
R0483:Sit1 UTSW 4 43482991 missense possibly damaging 0.52
R2679:Sit1 UTSW 4 43483157 missense probably damaging 1.00
R2885:Sit1 UTSW 4 43483314 missense possibly damaging 0.93
R2886:Sit1 UTSW 4 43483314 missense possibly damaging 0.93
R5644:Sit1 UTSW 4 43483562 missense probably benign 0.38
R6154:Sit1 UTSW 4 43482981 missense probably benign 0.44
R6264:Sit1 UTSW 4 43482651 missense possibly damaging 0.94
R6796:Sit1 UTSW 4 43482761 missense probably benign 0.00
R8345:Sit1 UTSW 4 43483168 missense possibly damaging 0.94
Predicted Primers PCR Primer
(F):5'- ATAGTGCAGGTTGCCATACAGG -3'
(R):5'- AACTCGCATGGGGTAAGCTG -3'

Sequencing Primer
(F):5'- TTGCCATACAGGGGAACTTC -3'
(R):5'- ATGTGGTTCCATGTTCTATCTGATC -3'
Posted On 2018-07-24