Mutagenetix > Incidental Mutations

Incidental Mutation 'R6695:Dtx4'

528561

Institutional Source

Beutler Lab

Gene Symbol

Dtx4

Ensembl Gene

ENSMUSG00000039982

Gene Name

deltex 4, E3 ubiquitin ligase

Synonyms

RNF155

MMRRC Submission

Accession Numbers

Genbank: NM_001047855

Is this an essential gene?

Possibly non essential (E-score: 0.399) question?

Stock #

R6695 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

12466341-12501996 bp(-) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 12473235 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 538 (R538*)

Ref Sequence

ENSEMBL: ENSMUSP00000040229 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045521]

AlphaFold

Q6PDK8

Predicted Effect

probably null
Transcript: ENSMUST00000045521
AA Change: R538*

SMART Domains

Protein: ENSMUSP00000040229
Gene: ENSMUSG00000039982
AA Change: R538*

Domain	Start	End	E-Value	Type
WWE	5	86	1.38e-38	SMART
WWE	88	163	6.72e-28	SMART
low complexity region	175	192	N/A	INTRINSIC
low complexity region	372	386	N/A	INTRINSIC
RING	406	464	2.2e-6	SMART
Blast:RING	510	532	3e-7	BLAST

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.5%
20x: 95.8%

Validation Efficiency

98% (45/46)

Allele List at MGI

All alleles(1) : Gene trapped(1)

Other mutations in this stock

Total: 45 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ankrd9	A	T	12: 110,977,063	L179H	probably benign	Het
Cacna1h	C	A	17: 25,393,740	A370S	probably damaging	Het
Cc2d2a	A	T	5: 43,718,677	I1053F	probably damaging	Het
Csmd3	A	G	15: 47,857,834	V1467A	probably damaging	Het
Cyp4f15	T	A	17: 32,692,612	L156*	probably null	Het
Dmwd	T	A	7: 19,080,727	L434Q	probably damaging	Het
Fcgbp	T	A	7: 28,086,270	C377*	probably null	Het
Galntl6	G	T	8: 58,427,770	H116Q	probably damaging	Het
Herc1	T	A	9: 66,483,866		probably null	Het
Hydin	T	G	8: 110,326,460	S255A	probably benign	Het
Knstrn	G	A	2: 118,814,242	A48T	probably damaging	Het
Lonrf2	T	C	1: 38,813,389	D127G	probably benign	Het
Luzp1	T	C	4: 136,545,298	S12P	possibly damaging	Het
Man2c1	A	T	9: 57,141,591	H822L	probably benign	Het
Map3k13	G	T	16: 21,922,278	G785V	probably benign	Het
Mia2	A	G	12: 59,172,580	H454R	probably damaging	Het
Mib2	G	A	4: 155,661,172	R61C	probably damaging	Het
Muc15	A	T	2: 110,731,271	L17F	probably damaging	Het
Myo1c	C	T	11: 75,671,635	P918S	probably benign	Het
Nav2	A	G	7: 49,464,904	I879V	probably benign	Het
Nomo1	T	A	7: 46,066,461	S751T	probably benign	Het
Olfr1449	A	T	19: 12,935,400	I221L	possibly damaging	Het
Olfr338	A	T	2: 36,377,105	S110C	probably benign	Het
Olfr996	A	G	2: 85,579,449	D70G	probably damaging	Het
Pcdhac2	A	G	18: 37,145,203	N412S	probably benign	Het
Plk5	T	C	10: 80,360,201	S235P	probably benign	Het
Ppm1j	A	G	3: 104,785,486	D437G	probably damaging	Het
Rab11fip1	T	C	8: 27,143,234	E1148G	probably damaging	Het
Rad9b	T	C	5: 122,351,691	N43S	probably damaging	Het
Rc3h2	A	C	2: 37,414,661	I29S	possibly damaging	Het
Rsf1	CG	CGACGGCGGGG	7: 97,579,908		probably benign	Homo
Spdl1	T	A	11: 34,823,003		probably null	Het
Spta1	A	T	1: 174,244,042		probably null	Het
Stk32c	A	T	7: 139,122,964	V53E	probably damaging	Het
Strc	A	T	2: 121,377,224	F555L	probably benign	Het
Sugct	T	G	13: 17,323,230	N286T	possibly damaging	Het
Swsap1	A	T	9: 21,956,675		probably null	Het
Thbs2	T	A	17: 14,674,164	D807V	possibly damaging	Het
Tnrc6b	A	G	15: 80,879,773	D492G	probably damaging	Het
Tonsl	A	T	15: 76,629,818	S1184T	possibly damaging	Het
Tpp2	T	A	1: 43,983,276	Y945N	probably benign	Het
Usp54	G	T	14: 20,560,869	A1293D	possibly damaging	Het
Vps52	A	T	17: 33,963,199	K516*	probably null	Het
Zbtb17	T	A	4: 141,461,799	V10D	probably damaging	Het
Zfp607b	T	C	7: 27,704,039	V640A	probably benign	Het

Other mutations in Dtx4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01533:Dtx4	APN	19	12478215	missense	possibly damaging	0.88
IGL02173:Dtx4	APN	19	12473257	nonsense	probably null
IGL03127:Dtx4	APN	19	12486500	splice site	probably benign
G5030:Dtx4	UTSW	19	12469579	missense	probably benign	0.07
R0143:Dtx4	UTSW	19	12486482	missense	probably damaging	0.98
R0932:Dtx4	UTSW	19	12492151	missense	probably benign
R1066:Dtx4	UTSW	19	12501009	missense	probably damaging	0.98
R2155:Dtx4	UTSW	19	12485282	nonsense	probably null
R2182:Dtx4	UTSW	19	12483107	missense	probably null	0.75
R2362:Dtx4	UTSW	19	12492535	missense	probably damaging	1.00
R3880:Dtx4	UTSW	19	12486456	missense	probably benign	0.01
R4108:Dtx4	UTSW	19	12501123	missense	probably damaging	0.96
R4361:Dtx4	UTSW	19	12485296	missense	probably benign	0.04
R4943:Dtx4	UTSW	19	12501060	missense	probably damaging	1.00
R5361:Dtx4	UTSW	19	12485262	critical splice donor site	probably null
R5440:Dtx4	UTSW	19	12492317	missense	probably damaging	1.00
R5613:Dtx4	UTSW	19	12485403	missense	probably damaging	0.97
R5614:Dtx4	UTSW	19	12482183	missense	probably damaging	1.00
R5703:Dtx4	UTSW	19	12482210	missense	possibly damaging	0.84
R5994:Dtx4	UTSW	19	12501153	missense	probably damaging	1.00
R7107:Dtx4	UTSW	19	12473260	nonsense	probably null
R7208:Dtx4	UTSW	19	12482073	critical splice donor site	probably null
R7231:Dtx4	UTSW	19	12469658	nonsense	probably null
R7521:Dtx4	UTSW	19	12492497	missense	probably benign	0.30
R7609:Dtx4	UTSW	19	12492281	missense	probably damaging	1.00
R7721:Dtx4	UTSW	19	12482136	missense	probably benign	0.09
R7775:Dtx4	UTSW	19	12492010	missense	probably benign	0.02
R8685:Dtx4	UTSW	19	12469631	missense	probably benign	0.36
Z1176:Dtx4	UTSW	19	12491909	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AGTTGCTCCACTCCCAACC -3'
(R):5'- TGGCTGTTGTTATTGTCACACCA -3'

Sequencing Primer
(F):5'- CTAGTCTGGAGTAGTCAATGCAGC -3'
(R):5'- GTTATTGTCACACCAAAGCCTG -3'

Posted On

2018-07-24