Mutagenetix > Incidental Mutation

Incidental Mutation 'R6724:Pvr'

529761

Institutional Source

Beutler Lab

Gene Symbol

Pvr

Ensembl Gene

ENSMUSG00000040511

Gene Name

poliovirus receptor

Synonyms

necl-5, CD155, 3830421F03Rik, Tage4, mE4, Taa1, D7Ertd458e

MMRRC Submission

044842-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.154) question?

Stock #

R6724 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

19637503-19655068 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 19652604 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Glycine at position 104 (R104G)

Ref Sequence

ENSEMBL: ENSMUSP00000039205 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000043517]

AlphaFold

Q8K094

Predicted Effect

possibly damaging
Transcript: ENSMUST00000043517
AA Change: R104G

PolyPhen 2 Score 0.955 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000039205
Gene: ENSMUSG00000040511
AA Change: R104G

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
IG	35	142	1.58e-10	SMART
Pfam:C2-set_2	145	231	2e-18	PFAM
Pfam:C1-set	160	233	1.3e-5	PFAM
IG_like	254	334	6.75e1	SMART
transmembrane domain	348	370	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159261

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160572

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000162649

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000208861

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.2%
20x: 94.8%

Validation Efficiency

98% (63/64)

MGI Phenotype

PHENOTYPE: Mice homozygous for one null allele have a reduced antibody response to oral immunization. Mice homozygous for a different null allele exhibit reduced susceptibility to chemically induced colon cancer. [provided by MGI curators]

Allele List at MGI

All alleles(6) : Targeted, knock-out(2) Targeted, other(2) Gene trapped(2)

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts5	T	A	16: 85,665,445 (GRCm39)	T619S	probably benign	Het
Adgra2	G	A	8: 27,604,210 (GRCm39)	A467T	possibly damaging	Het
Alox5	A	T	6: 116,391,509 (GRCm39)	I416N	probably damaging	Het
Blmh	A	G	11: 76,862,733 (GRCm39)		probably null	Het
Cftr	T	A	6: 18,255,973 (GRCm39)	Y567*	probably null	Het
Cnr1	T	A	4: 33,944,728 (GRCm39)	M372K	possibly damaging	Het
Col6a3	T	C	1: 90,706,874 (GRCm39)	T2080A	unknown	Het
Crybg3	A	T	16: 59,364,501 (GRCm39)	C2374S	probably benign	Het
Csmd2	A	G	4: 128,457,164 (GRCm39)	I3544V	probably damaging	Het
Dnah12	A	T	14: 26,518,180 (GRCm39)	D1809V	probably benign	Het
Dnah8	G	A	17: 30,967,542 (GRCm39)	D2585N	probably benign	Het
Dnajb12	A	G	10: 59,728,602 (GRCm39)	D190G	possibly damaging	Het
Dtnb	T	A	12: 3,736,817 (GRCm39)	V319D	probably damaging	Het
Eif1ad6	A	T	12: 87,668,754 (GRCm39)	I129F	unknown	Het
Ercc6	A	T	14: 32,288,288 (GRCm39)	E820V	probably benign	Het
Fip1l1	T	G	5: 74,752,435 (GRCm39)	V378G	probably damaging	Het
Gabrg1	T	A	5: 70,911,552 (GRCm39)	Y358F	possibly damaging	Het
Gcn1	T	G	5: 115,747,217 (GRCm39)		probably null	Het
Gm11011	T	A	2: 169,429,402 (GRCm39)	T28S	unknown	Het
Guf1	C	A	5: 69,723,736 (GRCm39)	N438K	probably damaging	Het
Hoxa7	T	C	6: 52,192,719 (GRCm39)	E223G	probably benign	Het
Hspg2	G	A	4: 137,242,618 (GRCm39)	G611E	probably damaging	Het
Ipo8	A	T	6: 148,711,473 (GRCm39)		probably null	Het
Isl2	A	G	9: 55,448,572 (GRCm39)	D3G	possibly damaging	Het
Kcnb2	A	G	1: 15,780,664 (GRCm39)	Y512C	probably damaging	Het
Kifc1	T	A	17: 34,105,707 (GRCm39)		probably null	Het
Klhdc10	A	G	6: 30,446,640 (GRCm39)	D183G	probably damaging	Het
Klra5	T	A	6: 129,883,643 (GRCm39)	K71N	probably benign	Het
Lrp6	T	C	6: 134,463,504 (GRCm39)	H559R	possibly damaging	Het
Maml3	T	C	3: 51,763,296 (GRCm39)	N556S	probably damaging	Het
Man2a1	A	G	17: 65,038,264 (GRCm39)	I83V	possibly damaging	Het
Mrgpra9	A	G	7: 46,884,786 (GRCm39)	S293P	probably damaging	Het
Nalcn	A	G	14: 123,535,479 (GRCm39)	S1282P	probably damaging	Het
Npepps	A	T	11: 97,096,828 (GRCm39)		probably benign	Het
Or4a72	A	T	2: 89,405,309 (GRCm39)	F254I	probably benign	Het
Or4c108	T	G	2: 88,803,612 (GRCm39)	I208L	probably benign	Het
Or8u10	A	T	2: 85,915,701 (GRCm39)	V140E	possibly damaging	Het
Or9m1	T	G	2: 87,733,946 (GRCm39)	S25R	probably benign	Het
Pkn3	C	A	2: 29,980,562 (GRCm39)	R818S	possibly damaging	Het
Plekha3	T	A	2: 76,517,745 (GRCm39)	H190Q	probably damaging	Het
Ppp2r3c	A	T	12: 55,335,281 (GRCm39)	S261T	probably benign	Het
Ptprj	T	C	2: 90,281,195 (GRCm39)	D1015G	probably benign	Het
Pus10	T	C	11: 23,679,037 (GRCm39)	M503T	possibly damaging	Het
Rubcnl	A	G	14: 75,289,450 (GRCm39)	R653G	probably benign	Het
Semp2l2a	A	T	8: 13,887,083 (GRCm39)	L336Q	probably damaging	Het
Serpina1a	G	T	12: 103,826,679 (GRCm39)		probably benign	Het
Shank3	G	A	15: 89,416,656 (GRCm39)	R265Q	probably damaging	Het
Slc22a22	C	T	15: 57,110,928 (GRCm39)	R433H	probably damaging	Het
Slc22a26	A	G	19: 7,779,726 (GRCm39)	I30T	probably benign	Het
Spz1	A	T	13: 92,711,992 (GRCm39)	N161K	possibly damaging	Het
Tacc2	A	G	7: 130,330,492 (GRCm39)	R259G	probably damaging	Het
Top1	G	A	2: 160,554,616 (GRCm39)	V456M	probably damaging	Het
Tpcn2	G	A	7: 144,810,257 (GRCm39)	A649V	probably benign	Het
Trank1	C	G	9: 111,194,984 (GRCm39)	R1003G	probably damaging	Het
Tril	T	A	6: 53,796,559 (GRCm39)	H221L	possibly damaging	Het
Unc79	C	T	12: 103,071,120 (GRCm39)	T1305I	probably damaging	Het
Unc80	C	T	1: 66,722,350 (GRCm39)	A2988V	possibly damaging	Het
Vinac1	A	C	2: 128,879,976 (GRCm39)	V650G	probably benign	Het
Vmn1r81	A	T	7: 11,994,599 (GRCm39)	M3K	probably damaging	Het
Vmn2r78	A	T	7: 86,603,466 (GRCm39)	D548V	probably damaging	Het
Vwa3b	G	A	1: 37,084,112 (GRCm39)	R95Q	probably damaging	Het
Wdr6	G	A	9: 108,452,093 (GRCm39)	H597Y	probably benign	Het
Yme1l1	C	T	2: 23,084,774 (GRCm39)	T624I	probably damaging	Het

Other mutations in Pvr

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00742:Pvr	APN	7	19,648,784 (GRCm39)	missense	probably damaging	1.00
IGL01700:Pvr	APN	7	19,643,157 (GRCm39)	missense	probably benign	0.11
IGL02536:Pvr	APN	7	19,652,717 (GRCm39)	missense	probably benign	0.17
F2404:Pvr	UTSW	7	19,639,102 (GRCm39)	missense	probably benign	0.06
R1016:Pvr	UTSW	7	19,643,142 (GRCm39)	missense	probably benign
R1470:Pvr	UTSW	7	19,652,549 (GRCm39)	missense	possibly damaging	0.51
R1470:Pvr	UTSW	7	19,652,549 (GRCm39)	missense	possibly damaging	0.51
R1525:Pvr	UTSW	7	19,644,551 (GRCm39)	nonsense	probably null
R2138:Pvr	UTSW	7	19,650,927 (GRCm39)	missense	probably damaging	1.00
R3912:Pvr	UTSW	7	19,643,217 (GRCm39)	missense	probably benign	0.01
R6667:Pvr	UTSW	7	19,639,727 (GRCm39)	missense	probably benign	0.07
R6855:Pvr	UTSW	7	19,643,139 (GRCm39)	missense	possibly damaging	0.92
R6866:Pvr	UTSW	7	19,652,555 (GRCm39)	missense	probably benign	0.01
R7030:Pvr	UTSW	7	19,639,105 (GRCm39)	missense	possibly damaging	0.84
R7158:Pvr	UTSW	7	19,652,562 (GRCm39)	nonsense	probably null
R7352:Pvr	UTSW	7	19,644,541 (GRCm39)	missense	possibly damaging	0.81
R8853:Pvr	UTSW	7	19,650,897 (GRCm39)	missense	possibly damaging	0.89
R9084:Pvr	UTSW	7	19,650,937 (GRCm39)	missense	possibly damaging	0.73
R9720:Pvr	UTSW	7	19,643,121 (GRCm39)	nonsense	probably null
X0025:Pvr	UTSW	7	19,644,577 (GRCm39)	missense	probably benign	0.38

Predicted Primers

PCR Primer
(F):5'- CTGGTCTGAACAAATGGAGGAC -3'
(R):5'- CCACCTTGCACTGTAGTCTG -3'

Sequencing Primer
(F):5'- ATGTCATGTCCCAAGGGCATC -3'
(R):5'- GCACTGTAGTCTGACTTCTAATGAG -3'

Posted On

2018-08-01