Incidental Mutation 'R6729:Psg21'
| ID |
529971 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Psg21
|
| Ensembl Gene |
ENSMUSG00000070796 |
| Gene Name |
pregnancy-specific glycoprotein 21 |
| Synonyms |
1600026N13Rik, 1600019C01Rik, 1600025N01Rik, cea8 |
| MMRRC Submission |
044847-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.049)
|
| Stock # |
R6729 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
7 |
| Chromosomal Location |
18646736-18656725 bp(-) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 18652591 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Isoleucine to Phenylalanine
at position 157
(I157F)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000092387
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000094793]
[ENSMUST00000182128]
|
| AlphaFold |
Q9DAV5 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000094793
AA Change: I157F
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000092387
Gene: ENSMUSG00000070796
AA Change: I157F
| Domain | Start | End | E-Value | Type |
|---|
|
IG
|
39 |
138 |
3.04e-3 |
SMART |
|
IG
|
159 |
260 |
7.25e-1 |
SMART |
|
IG
|
276 |
375 |
1.25e-4 |
SMART |
|
IGc2
|
393 |
457 |
1.47e-10 |
SMART |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000182128
AA Change: I157F
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000138173
Gene: ENSMUSG00000070796
AA Change: I157F
| Domain | Start | End | E-Value | Type |
|---|
|
IG
|
39 |
138 |
3.04e-3 |
SMART |
|
IG
|
159 |
260 |
7.25e-1 |
SMART |
|
IG
|
276 |
375 |
1.25e-4 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182228
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182933
|
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 98.4%
- 20x: 95.5%
|
| Validation Efficiency |
100% (34/34) |
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 33 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2410089E03Rik |
T |
C |
15: 8,188,601 (GRCm38) |
|
probably null |
Het |
| Acad12 |
A |
T |
5: 121,607,935 (GRCm38) |
H230Q |
probably damaging |
Het |
| AI182371 |
G |
T |
2: 35,084,705 (GRCm38) |
|
probably benign |
Het |
| Ank3 |
T |
C |
10: 69,808,925 (GRCm38) |
V73A |
probably damaging |
Het |
| Apbb1 |
A |
T |
7: 105,565,381 (GRCm38) |
M28K |
probably damaging |
Het |
| Atp6v1f |
A |
G |
6: 29,467,965 (GRCm38) |
D50G |
probably benign |
Het |
| Cdkal1 |
G |
A |
13: 29,474,695 (GRCm38) |
T356M |
probably damaging |
Het |
| Clca1 |
A |
G |
3: 145,005,966 (GRCm38) |
I756T |
probably damaging |
Het |
| Cyp17a1 |
A |
G |
19: 46,670,581 (GRCm38) |
V207A |
probably benign |
Het |
| Dnah7c |
A |
G |
1: 46,672,521 (GRCm38) |
E2636G |
possibly damaging |
Het |
| Gm13090 |
A |
T |
4: 151,089,628 (GRCm38) |
|
probably benign |
Het |
| Nceh1 |
T |
A |
3: 27,241,271 (GRCm38) |
L227* |
probably null |
Het |
| Nedd9 |
A |
G |
13: 41,315,802 (GRCm38) |
M625T |
probably damaging |
Het |
| Olfr1426 |
T |
A |
19: 12,088,496 (GRCm38) |
M99L |
probably benign |
Het |
| Olfr148 |
A |
T |
9: 39,613,773 (GRCm38) |
M69L |
probably benign |
Het |
| Olfr464 |
G |
A |
11: 87,914,850 (GRCm38) |
Q19* |
probably null |
Het |
| Olfr920 |
A |
G |
9: 38,755,828 (GRCm38) |
I47V |
probably benign |
Het |
| Pcsk4 |
T |
C |
10: 80,325,101 (GRCm38) |
N297S |
probably damaging |
Het |
| Rabep2 |
T |
C |
7: 126,440,197 (GRCm38) |
V294A |
probably benign |
Het |
| Rsph1 |
A |
G |
17: 31,277,252 (GRCm38) |
S2P |
unknown |
Het |
| Sacs |
A |
G |
14: 61,210,518 (GRCm38) |
K3338E |
probably damaging |
Het |
| Slc35f4 |
T |
G |
14: 49,318,960 (GRCm38) |
N112T |
probably benign |
Het |
| Slc43a3 |
T |
C |
2: 84,938,285 (GRCm38) |
F83L |
probably damaging |
Het |
| Slc6a15 |
T |
C |
10: 103,393,914 (GRCm38) |
V154A |
probably damaging |
Het |
| Synj2 |
T |
A |
17: 5,986,014 (GRCm38) |
M1K |
probably null |
Het |
| Tcp1 |
G |
A |
17: 12,923,253 (GRCm38) |
R378Q |
probably damaging |
Het |
| Tead2 |
A |
G |
7: 45,217,234 (GRCm38) |
T6A |
probably benign |
Het |
| Tpte |
G |
T |
8: 22,355,475 (GRCm38) |
V514L |
probably damaging |
Het |
| Trpm6 |
A |
G |
19: 18,830,297 (GRCm38) |
N1069D |
probably damaging |
Het |
| Uhrf1bp1l |
T |
A |
10: 89,805,684 (GRCm38) |
S906T |
probably benign |
Het |
| Vmn2r105 |
C |
A |
17: 20,208,343 (GRCm38) |
G824C |
probably damaging |
Het |
| Yod1 |
G |
A |
1: 130,717,538 (GRCm38) |
G19S |
probably damaging |
Het |
| Zfp934 |
A |
T |
13: 62,492,932 (GRCm38) |
N2K |
probably damaging |
Het |
|
| Other mutations in Psg21 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01571:Psg21
|
APN |
7 |
18,654,825 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02390:Psg21
|
APN |
7 |
18,652,631 (GRCm38) |
missense |
probably benign |
0.11 |
|
IGL02548:Psg21
|
APN |
7 |
18,655,036 (GRCm38) |
missense |
possibly damaging |
0.89 |
|
IGL03001:Psg21
|
APN |
7 |
18,652,485 (GRCm38) |
missense |
probably benign |
0.03 |
|
IGL03135:Psg21
|
APN |
7 |
18,654,918 (GRCm38) |
missense |
probably benign |
0.00 |
|
R0131:Psg21
|
UTSW |
7 |
18,654,868 (GRCm38) |
missense |
probably benign |
0.39 |
|
R0551:Psg21
|
UTSW |
7 |
18,652,640 (GRCm38) |
critical splice acceptor site |
probably null |
|
|
R1512:Psg21
|
UTSW |
7 |
18,656,500 (GRCm38) |
missense |
probably benign |
0.00 |
|
R1874:Psg21
|
UTSW |
7 |
18,650,816 (GRCm38) |
missense |
probably benign |
0.15 |
|
R1993:Psg21
|
UTSW |
7 |
18,654,770 (GRCm38) |
missense |
probably benign |
0.04 |
|
R2327:Psg21
|
UTSW |
7 |
18,652,453 (GRCm38) |
missense |
possibly damaging |
0.61 |
|
R3414:Psg21
|
UTSW |
7 |
18,652,380 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4422:Psg21
|
UTSW |
7 |
18,647,332 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5138:Psg21
|
UTSW |
7 |
18,656,528 (GRCm38) |
start codon destroyed |
probably null |
0.94 |
|
R5623:Psg21
|
UTSW |
7 |
18,655,014 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5686:Psg21
|
UTSW |
7 |
18,652,258 (GRCm38) |
intron |
probably benign |
|
|
R6166:Psg21
|
UTSW |
7 |
18,656,739 (GRCm38) |
unclassified |
probably benign |
|
|
R6177:Psg21
|
UTSW |
7 |
18,652,354 (GRCm38) |
missense |
possibly damaging |
0.64 |
|
R6190:Psg21
|
UTSW |
7 |
18,655,001 (GRCm38) |
missense |
possibly damaging |
0.61 |
|
R6210:Psg21
|
UTSW |
7 |
18,652,345 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6482:Psg21
|
UTSW |
7 |
18,654,739 (GRCm38) |
splice site |
probably null |
|
|
R6866:Psg21
|
UTSW |
7 |
18,652,284 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6992:Psg21
|
UTSW |
7 |
18,654,743 (GRCm38) |
critical splice donor site |
probably null |
|
|
R7075:Psg21
|
UTSW |
7 |
18,654,861 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7081:Psg21
|
UTSW |
7 |
18,654,849 (GRCm38) |
nonsense |
probably null |
|
|
R7098:Psg21
|
UTSW |
7 |
18,652,545 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7582:Psg21
|
UTSW |
7 |
18,647,203 (GRCm38) |
makesense |
probably null |
|
|
R7588:Psg21
|
UTSW |
7 |
18,647,209 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7607:Psg21
|
UTSW |
7 |
18,654,783 (GRCm38) |
missense |
probably benign |
0.02 |
|
R7830:Psg21
|
UTSW |
7 |
18,647,298 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7964:Psg21
|
UTSW |
7 |
18,647,211 (GRCm38) |
missense |
probably benign |
0.01 |
|
R8758:Psg21
|
UTSW |
7 |
18,650,753 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8972:Psg21
|
UTSW |
7 |
18,647,368 (GRCm38) |
missense |
probably benign |
0.03 |
|
R8988:Psg21
|
UTSW |
7 |
18,652,464 (GRCm38) |
missense |
probably benign |
0.00 |
|
R9119:Psg21
|
UTSW |
7 |
18,647,484 (GRCm38) |
missense |
probably benign |
0.14 |
|
R9446:Psg21
|
UTSW |
7 |
18,654,940 (GRCm38) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- ATTGCTGAACACTATCTCTCTACCG -3'
(R):5'- TGGAGGTAATGTGATGACCGC -3'
Sequencing Primer
(F):5'- GAACACTATCTCTCTACCGCTGTGG -3'
(R):5'- TGTGATGACCGCCACCAAGTAG -3'
|
| Posted On |
2018-08-01 |
Incidental Mutation