Mutagenetix > Incidental Mutation

Incidental Mutation 'R6747:Snw1'

530608

Institutional Source

Beutler Lab

Gene Symbol

Snw1

Ensembl Gene

ENSMUSG00000021039

Gene Name

SNW domain containing 1

Synonyms

Skiip, SKIP, NCoA-62, 2310008B08Rik, SNW1

MMRRC Submission

044864-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.963) question?

Stock #

R6747 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

87449075-87472274 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 87464710 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 57 (D57G)

Ref Sequence

ENSEMBL: ENSMUSP00000021428 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021428]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000021428
AA Change: D57G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000021428
Gene: ENSMUSG00000021039
AA Change: D57G

Domain	Start	End	E-Value	Type
Pfam:SKIP_SNW	175	335	2e-78	PFAM
low complexity region	524	536	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.5%
20x: 96.0%

Validation Efficiency

97% (68/70)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene, a member of the SNW gene family, encodes a coactivator that enhances transcription from some Pol II promoters. This coactivator can bind to the ligand-binding domain of the vitamin D receptor and to retinoid receptors to enhance vitamin D-, retinoic acid-, estrogen-, and glucocorticoid-mediated gene expression. It can also function as a splicing factor by interacting with poly(A)-binding protein 2 to directly control the expression of muscle-specific genes at the transcriptional level. Finally, the protein may be involved in oncogenesis since it interacts with a region of SKI oncoproteins that is required for transforming activity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca4	C	T	3: 122,126,313 (GRCm38)		probably null	Het
Acyp1	C	T	12: 85,278,905 (GRCm38)	V107I	probably null	Het
Aftph	T	C	11: 20,726,144 (GRCm38)		probably null	Het
Agtpbp1	A	T	13: 59,544,353 (GRCm38)		probably null	Het
Arhgap15	C	A	2: 44,116,677 (GRCm38)	P269T	probably damaging	Het
Arhgap30	T	C	1: 171,407,729 (GRCm38)	V557A	probably damaging	Het
Asb3	T	A	11: 31,081,493 (GRCm38)	M410K	probably benign	Het
B4galnt2	T	C	11: 95,868,634 (GRCm38)		probably null	Het
Birc3	A	G	9: 7,860,261 (GRCm38)		probably null	Het
Cav2	A	T	6: 17,286,951 (GRCm38)	N69Y	probably damaging	Het
Cc2d2b	G	A	19: 40,795,667 (GRCm38)	C826Y	probably benign	Het
Cenpf	T	A	1: 189,652,854 (GRCm38)	T2410S	probably benign	Het
Chchd1	A	G	14: 20,703,380 (GRCm38)	D24G	probably benign	Het
Cmip	G	A	8: 117,436,879 (GRCm38)	G450S	probably benign	Het
Col11a1	C	T	3: 114,212,450 (GRCm38)	Q534*	probably null	Het
Col3a1	G	T	1: 45,338,622 (GRCm38)		probably benign	Het
Cox4i1	T	C	8: 120,673,230 (GRCm38)	I31T	possibly damaging	Het
Cstf3	G	T	2: 104,646,767 (GRCm38)	V168F	probably damaging	Het
Dapk1	T	C	13: 60,725,340 (GRCm38)	I352T	probably benign	Het
Ddx52	T	C	11: 83,955,302 (GRCm38)	V456A	probably damaging	Het
Dmxl2	A	T	9: 54,416,088 (GRCm38)	H1337Q	probably damaging	Het
Dnah7a	T	C	1: 53,636,062 (GRCm38)	T369A	probably benign	Het
Dppa1	T	A	11: 46,625,595 (GRCm38)	I8F	unknown	Het
Ebf1	G	T	11: 44,883,814 (GRCm38)	V213F	probably damaging	Het
Foxb2	C	A	19: 16,872,833 (GRCm38)	E270*	probably null	Het
Gclc	A	T	9: 77,788,245 (GRCm38)	R450W	probably damaging	Het
Grin2d	T	C	7: 45,862,268 (GRCm38)	E251G	probably damaging	Het
Hal	A	T	10: 93,500,677 (GRCm38)	N423Y	probably damaging	Het
Krtap4-8	T	A	11: 99,780,091 (GRCm38)	I185F	unknown	Het
Lrp3	T	A	7: 35,211,437 (GRCm38)	Q61L	probably benign	Het
Met	A	C	6: 17,571,467 (GRCm38)	Q1296H	probably damaging	Het
Mphosph9	T	A	5: 124,297,699 (GRCm38)	N557I	possibly damaging	Het
Mrpl46	C	A	7: 78,782,981 (GRCm38)	W16C	probably benign	Het
Myh13	G	A	11: 67,350,419 (GRCm38)	R874Q	probably damaging	Het
Nelfb	G	A	2: 25,203,381 (GRCm38)	T453I	probably benign	Het
Nos2	A	G	11: 78,952,954 (GRCm38)	D909G	probably damaging	Het
Nr5a2	T	C	1: 136,882,344 (GRCm38)	E431G	possibly damaging	Het
Nsmce2	A	G	15: 59,591,724 (GRCm38)	D149G	probably benign	Het
Or52b1	C	T	7: 105,330,027 (GRCm38)	R55H	probably benign	Het
Or5ac21	T	C	16: 59,303,641 (GRCm38)	F164L	probably benign	Het
Pcbp4	C	A	9: 106,460,648 (GRCm38)		probably null	Het
Peg10	A	G	6: 4,757,137 (GRCm38)		probably benign	Het
Pms2	C	T	5: 143,925,419 (GRCm38)	P154L	probably benign	Het
Pou6f2	A	C	13: 18,129,187 (GRCm38)	L112R	probably benign	Het
Pramel30	T	C	4: 144,332,978 (GRCm38)	W420R	probably benign	Het
Prdm6	A	T	18: 53,465,046 (GRCm38)		probably benign	Het
Prob1	G	A	18: 35,655,154 (GRCm38)	R12W	probably damaging	Het
Rif1	T	A	2: 52,078,263 (GRCm38)		probably null	Het
Rpl9-ps6	A	G	19: 32,466,143 (GRCm38)	S137P	probably benign	Het
Rsf1	GGCG	GGCGACGGCAGCG	7: 97,579,906 (GRCm38)		probably benign	Homo
Sec23ip	A	G	7: 128,752,849 (GRCm38)		silent	Het
Slc38a9	T	C	13: 112,690,180 (GRCm38)	C151R	probably benign	Het
Slc39a8	T	C	3: 135,849,180 (GRCm38)		probably null	Het
Slc6a18	C	A	13: 73,677,991 (GRCm38)		probably benign	Het
Sox6	C	G	7: 115,541,731 (GRCm38)	R505P	probably damaging	Het
Speg	T	C	1: 75,410,395 (GRCm38)		probably null	Het
Spire2	C	T	8: 123,356,846 (GRCm38)	R190C	probably damaging	Het
Stard9	A	C	2: 120,698,383 (GRCm38)	H1707P	possibly damaging	Het
Tenm3	G	T	8: 48,343,243 (GRCm38)	T237K	probably damaging	Het
Themis2	T	A	4: 132,796,262 (GRCm38)	E31V	possibly damaging	Het
Trim56	T	G	5: 137,114,521 (GRCm38)	Q47P	probably damaging	Het
Trim58	T	C	11: 58,651,264 (GRCm38)	I350T	probably benign	Het
Ttll7	C	T	3: 146,944,056 (GRCm38)	P639S	probably benign	Het
Ubxn6	A	G	17: 56,070,650 (GRCm38)		probably null	Het
Vmn2r114	A	T	17: 23,309,876 (GRCm38)	F417L	probably benign	Het
Vmn2r29	T	A	7: 7,231,422 (GRCm38)	M822L	probably benign	Het
Vps9d1	T	C	8: 123,254,007 (GRCm38)	D27G	probably damaging	Het
Wdr3	C	T	3: 100,138,724 (GRCm38)	R931Q	probably damaging	Het
Whamm	G	A	7: 81,578,302 (GRCm38)		probably null	Het
Zcchc24	T	C	14: 25,757,033 (GRCm38)	H142R	probably damaging	Het
Zfp292	T	C	4: 34,806,894 (GRCm38)	K2050R	probably damaging	Het

Other mutations in Snw1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00497:Snw1	APN	12	87,452,580 (GRCm38)	critical splice donor site	probably null
IGL00559:Snw1	APN	12	87,468,731 (GRCm38)	missense	probably damaging	0.98
IGL00561:Snw1	APN	12	87,450,804 (GRCm38)	critical splice donor site	probably null
IGL01019:Snw1	APN	12	87,450,941 (GRCm38)	missense	probably benign	0.24
IGL01304:Snw1	APN	12	87,453,915 (GRCm38)	missense	possibly damaging	0.71
IGL01918:Snw1	APN	12	87,455,668 (GRCm38)	missense	probably benign	0.14
IGL03170:Snw1	APN	12	87,472,252 (GRCm38)	missense	probably benign	0.00
R0149:Snw1	UTSW	12	87,461,917 (GRCm38)	missense	possibly damaging	0.51
R1760:Snw1	UTSW	12	87,464,689 (GRCm38)	missense	probably benign	0.06
R1935:Snw1	UTSW	12	87,459,477 (GRCm38)	missense	probably damaging	1.00
R2130:Snw1	UTSW	12	87,452,703 (GRCm38)	unclassified	probably benign
R2230:Snw1	UTSW	12	87,452,658 (GRCm38)	missense	probably benign	0.00
R2496:Snw1	UTSW	12	87,450,819 (GRCm38)	missense	probably benign
R4907:Snw1	UTSW	12	87,459,489 (GRCm38)	missense	probably benign	0.19
R4926:Snw1	UTSW	12	87,452,658 (GRCm38)	missense	probably benign	0.00
R5138:Snw1	UTSW	12	87,460,435 (GRCm38)	missense	probably benign	0.00
R5447:Snw1	UTSW	12	87,455,715 (GRCm38)	missense	probably benign	0.19
R6239:Snw1	UTSW	12	87,464,628 (GRCm38)	missense	probably damaging	1.00
R6552:Snw1	UTSW	12	87,459,419 (GRCm38)	critical splice donor site	probably null
R7230:Snw1	UTSW	12	87,464,554 (GRCm38)	missense	probably damaging	1.00
R7242:Snw1	UTSW	12	87,468,645 (GRCm38)	missense	possibly damaging	0.94
R8184:Snw1	UTSW	12	87,453,903 (GRCm38)	missense	probably benign	0.01
R9297:Snw1	UTSW	12	87,458,904 (GRCm38)	missense	probably damaging	1.00
R9318:Snw1	UTSW	12	87,458,904 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAGTGGCTTATCATTTCCCCAC -3'
(R):5'- CATGGTGCTTCCTACACTCG -3'

Sequencing Primer
(F):5'- GCAAAACCAATGAGAGATTACCTTG -3'
(R):5'- ACACTCGGTCTGGTTTACACACTG -3'

Posted On

2018-08-01