Mutagenetix > Incidental Mutations

Incidental Mutation 'R6752:Pom121l2'

530849

Institutional Source

Beutler Lab

Gene Symbol

Pom121l2

Ensembl Gene

ENSMUSG00000016982

Gene Name

POM121 membrane glycoprotein-like 2 (rat)

Synonyms

LOC195236

MMRRC Submission

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.061) question?

Stock #

R6752 (G1)

Quality Score

95.0077

Status

Validated

Chromosome

Chromosomal Location

21981194-21988734 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 21981769 bp

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Cysteine at position 70 (F70C)

Ref Sequence

ENSEMBL: ENSMUSP00000113688 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000017126] [ENSMUST00000117882]

AlphaFold

Q5SW25

Predicted Effect

probably damaging
Transcript: ENSMUST00000017126
AA Change: F70C

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000017126
Gene: ENSMUSG00000016982
AA Change: F70C

Domain	Start	End	E-Value	Type
low complexity region	42	60	N/A	INTRINSIC
Pfam:POM121	162	301	3.5e-24	PFAM
low complexity region	367	379	N/A	INTRINSIC
low complexity region	413	433	N/A	INTRINSIC
low complexity region	517	526	N/A	INTRINSIC
low complexity region	558	572	N/A	INTRINSIC
low complexity region	697	712	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000117882
AA Change: F70C

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000113688
Gene: ENSMUSG00000016982
AA Change: F70C

Domain	Start	End	E-Value	Type
low complexity region	42	60	N/A	INTRINSIC
Pfam:POM121	162	301	2e-24	PFAM
low complexity region	367	379	N/A	INTRINSIC
low complexity region	413	433	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.2%
20x: 94.8%

Validation Efficiency

98% (55/56)

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acaca	T	C	11: 84,195,483	L45S	probably benign	Het
Agbl2	G	A	2: 90,803,074	C518Y	probably damaging	Het
Akt3	A	T	1: 177,050,190	Y337*	probably null	Het
Aox1	T	C	1: 58,047,239	I101T	probably benign	Het
Arhgap23	T	C	11: 97,452,248	F241S	probably damaging	Het
Asmt	A	G	X: 170,676,361	M202V	probably benign	Het
Atp6v0a2	A	G	5: 124,641,514	E189G	probably damaging	Het
Birc3	G	A	9: 7,857,344	A376V	probably benign	Het
Ccbe1	C	T	18: 66,076,307		probably null	Het
Chst2	C	A	9: 95,404,749	E515*	probably null	Het
Col12a1	A	T	9: 79,633,424	N2426K	possibly damaging	Het
Dmrt2	A	G	19: 25,678,342	N435S	probably damaging	Het
Dnah14	A	G	1: 181,593,452	K123E	probably benign	Het
Dock4	T	A	12: 40,820,617	L1452Q	probably damaging	Het
Galnt7	G	A	8: 57,652,951	R10C	probably damaging	Het
Gm16506	A	G	14: 43,727,419	I22T	unknown	Het
H2-Q6	A	G	17: 35,428,127	T292A	probably damaging	Het
Ifne	A	G	4: 88,880,082	M33T	probably benign	Het
Igf2r	G	A	17: 12,714,944	R808W	probably damaging	Het
Igfbp5	T	C	1: 72,863,909	E169G	probably damaging	Het
Inppl1	G	A	7: 101,832,542	R198*	probably null	Het
Irgm1	T	C	11: 48,866,463	T174A	probably damaging	Het
Itih3	C	T	14: 30,923,489	G21S	possibly damaging	Het
Klra4	G	T	6: 130,062,028	Q134K	probably benign	Het
Mfsd1	T	A	3: 67,596,603	Y309*	probably null	Het
Mrps10	A	G	17: 47,377,815	N162S	probably damaging	Het
Mtmr14	T	C	6: 113,240,397	F90S	probably damaging	Het
Myh15	A	G	16: 49,182,927	D1783G	probably damaging	Het
Myo3b	A	G	2: 70,289,512	E972G	probably damaging	Het
Myt1	G	T	2: 181,801,082	V455F	probably damaging	Het
Nbea	T	A	3: 55,968,309	T1647S	probably benign	Het
Nbea	A	T	3: 56,037,219	S575T	probably benign	Het
Ntn4	A	G	10: 93,734,175	N466S	probably benign	Het
Olfr1113	A	G	2: 87,213,044	M51V	probably benign	Het
Olfr1468-ps1	T	A	19: 13,375,526	L188H	unknown	Het
Olfr197	T	A	16: 59,186,331	N51Y	probably damaging	Het
Pcdhgb4	T	A	18: 37,720,651	I33N	probably damaging	Het
Pi4ka	A	G	16: 17,376,982	L184P	possibly damaging	Het
Psmb5	T	C	14: 54,616,755	T89A	probably benign	Het
Rab11fip2	T	C	19: 59,907,043	D471G	probably damaging	Het
Rnh1	A	G	7: 141,163,441	V207A	probably benign	Het
Sh3tc2	C	A	18: 61,961,037	T49N	probably benign	Het
Skint4	T	C	4: 112,119,863	M158T	possibly damaging	Het
Skint7	T	A	4: 111,980,266	H80Q	probably benign	Het
Smg1	A	G	7: 118,163,316		probably benign	Het
Sostdc1	T	C	12: 36,314,412	V40A	probably benign	Het
Sptlc1	C	A	13: 53,335,358	K437N	possibly damaging	Het
Stat2	T	C	10: 128,283,753	F503L	probably damaging	Het
Syt16	A	T	12: 74,229,213		probably null	Het
Tspyl1	T	C	10: 34,282,587	S103P	probably benign	Het
Ube4a	A	T	9: 44,925,948	S1053R	probably damaging	Het
Vipr1	A	G	9: 121,653,893	N58S	probably damaging	Het
Zfp184	C	A	13: 21,959,408	A428E	probably damaging	Het
Zfp292	A	C	4: 34,808,593	F1484V	possibly damaging	Het
Zfp599	G	A	9: 22,249,544	H442Y	probably damaging	Het
Zfp944	G	A	17: 22,339,519	T249I	probably benign	Het
Zkscan14	T	A	5: 145,195,506	H405L	probably damaging	Het

Other mutations in Pom121l2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02104:Pom121l2	APN	13	21982275	missense	possibly damaging	0.70
IGL02223:Pom121l2	APN	13	21982095	missense	probably benign	0.01
R0401:Pom121l2	UTSW	13	21982225	missense	probably benign	0.01
R0402:Pom121l2	UTSW	13	21988479	splice site	probably benign
R0437:Pom121l2	UTSW	13	21983205	missense	possibly damaging	0.72
R0575:Pom121l2	UTSW	13	21984168	missense	probably damaging	0.99
R0605:Pom121l2	UTSW	13	21982036	missense	probably damaging	1.00
R0892:Pom121l2	UTSW	13	21982474	missense	possibly damaging	0.49
R0992:Pom121l2	UTSW	13	21982759	missense	probably benign	0.01
R1259:Pom121l2	UTSW	13	21982127	nonsense	probably null
R1564:Pom121l2	UTSW	13	21983353	missense	possibly damaging	0.86
R1603:Pom121l2	UTSW	13	21983344	missense	probably damaging	1.00
R1836:Pom121l2	UTSW	13	21983784	missense	probably benign	0.03
R1970:Pom121l2	UTSW	13	21983472	missense	probably damaging	0.98
R2018:Pom121l2	UTSW	13	21982734	missense	possibly damaging	0.54
R2180:Pom121l2	UTSW	13	21981975	missense	probably benign	0.08
R2277:Pom121l2	UTSW	13	21984247	missense	probably benign
R2365:Pom121l2	UTSW	13	21983784	missense	probably benign	0.20
R3951:Pom121l2	UTSW	13	21982128	missense	probably damaging	1.00
R4371:Pom121l2	UTSW	13	21982239	missense	probably benign	0.01
R4574:Pom121l2	UTSW	13	21984402	missense	probably benign	0.02
R4593:Pom121l2	UTSW	13	21984453	missense	probably damaging	1.00
R4983:Pom121l2	UTSW	13	21983814	missense	probably benign	0.02
R5320:Pom121l2	UTSW	13	21981845	nonsense	probably null
R5661:Pom121l2	UTSW	13	21984255	missense	possibly damaging	0.90
R5662:Pom121l2	UTSW	13	21982188	missense	probably benign	0.01
R5908:Pom121l2	UTSW	13	21981814	missense	probably damaging	0.99
R5980:Pom121l2	UTSW	13	21983376	missense	probably damaging	0.96
R6145:Pom121l2	UTSW	13	21982302	nonsense	probably null
R6160:Pom121l2	UTSW	13	21983668	missense	possibly damaging	0.52
R6327:Pom121l2	UTSW	13	21982332	missense	probably damaging	1.00
R6504:Pom121l2	UTSW	13	21983461	missense	possibly damaging	0.55
R6745:Pom121l2	UTSW	13	21983698	missense	probably benign	0.00
R6750:Pom121l2	UTSW	13	21981937	missense	probably damaging	1.00
R6796:Pom121l2	UTSW	13	21983524	missense	probably benign	0.09
R6984:Pom121l2	UTSW	13	21982021	missense	probably benign	0.33
R7284:Pom121l2	UTSW	13	21982605	missense	probably damaging	1.00
R7287:Pom121l2	UTSW	13	21984332	missense	probably benign	0.16
R7568:Pom121l2	UTSW	13	21982626	missense	probably benign	0.03
R7624:Pom121l2	UTSW	13	21983529	missense	probably damaging	0.97
R7832:Pom121l2	UTSW	13	21983878	missense	possibly damaging	0.49
R7956:Pom121l2	UTSW	13	21983146	missense	probably damaging	1.00
R8103:Pom121l2	UTSW	13	21982374	missense	probably benign	0.00
R8506:Pom121l2	UTSW	13	21983619	missense	probably benign	0.04
Z1177:Pom121l2	UTSW	13	21988486	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- AAACGGGGCTAGAAGTCACC -3'
(R):5'- CTCTTGAGACCGGGAACAAG -3'

Sequencing Primer
(F):5'- TCTCAGCATGGGCAGCTAC -3'
(R):5'- AACAAGGGCCGTGGTCTC -3'

Posted On

2018-08-01