Incidental Mutation 'IGL01123:Pygm'
| ID |
53277 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Pygm
|
| Ensembl Gene |
ENSMUSG00000032648 |
| Gene Name |
muscle glycogen phosphorylase |
| Synonyms |
PG |
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
IGL01123
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
19 |
| Chromosomal Location |
6384399-6398459 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 6391394 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Asparagine to Serine
at position 473
(N473S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000109111
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000035269]
[ENSMUST00000113483]
|
| AlphaFold |
Q9WUB3 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000035269
AA Change: N561S
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000047564
Gene: ENSMUSG00000032648
AA Change: N561S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Phosphorylase
|
113 |
829 |
N/A |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000113483
AA Change: N473S
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000109111
Gene: ENSMUSG00000032648
AA Change: N473S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Phosphorylase
|
62 |
742 |
N/A |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000142755
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: This gene encodes a glycolysis enzyme found in muscle. Highly similar enzymes encoded by different genes are found in liver and brain. The encoded protein is involved in regulating the breakdown of glycogen to glucose-1-phosphate, which is necessary for ATP generation. [provided by RefSeq, Dec 2015]
PHENOTYPE: Mice homozygous for a null mutation exhibit massive muscle glycogen accumulation, elevated creatine kinase levels in blood, and very poor exercise performance. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 46 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2310057J18Rik |
G |
T |
10: 28,973,938 (GRCm38) |
D167E |
probably damaging |
Het |
| Aadat |
A |
T |
8: 60,526,614 (GRCm38) |
E170V |
probably benign |
Het |
| Acsf2 |
T |
C |
11: 94,570,450 (GRCm38) |
E300G |
probably benign |
Het |
| Agbl3 |
C |
T |
6: 34,846,976 (GRCm38) |
Q859* |
probably null |
Het |
| Arhgap11a |
T |
C |
2: 113,834,773 (GRCm38) |
|
probably benign |
Het |
| Arhgef40 |
C |
A |
14: 51,994,346 (GRCm38) |
Q730K |
probably damaging |
Het |
| Armc3 |
C |
T |
2: 19,201,805 (GRCm38) |
P13L |
possibly damaging |
Het |
| B3gnt2 |
T |
A |
11: 22,836,490 (GRCm38) |
T233S |
probably benign |
Het |
| Bnc1 |
G |
A |
7: 81,973,707 (GRCm38) |
Q591* |
probably null |
Het |
| Bsn |
A |
T |
9: 108,115,986 (GRCm38) |
F856I |
probably damaging |
Het |
| CK137956 |
T |
A |
4: 127,935,850 (GRCm38) |
T558S |
probably benign |
Het |
| Coq8b |
G |
A |
7: 27,240,084 (GRCm38) |
V180I |
probably damaging |
Het |
| Csmd1 |
A |
T |
8: 17,534,928 (GRCm38) |
L16Q |
possibly damaging |
Het |
| Dhx37 |
A |
G |
5: 125,419,088 (GRCm38) |
S769P |
possibly damaging |
Het |
| Diras1 |
T |
A |
10: 81,022,415 (GRCm38) |
M1L |
probably damaging |
Het |
| Fam161b |
A |
G |
12: 84,357,664 (GRCm38) |
W81R |
probably benign |
Het |
| Fat4 |
A |
T |
3: 38,957,269 (GRCm38) |
I2173L |
probably benign |
Het |
| Fbn2 |
T |
C |
18: 58,104,081 (GRCm38) |
T617A |
possibly damaging |
Het |
| Gabrq |
G |
A |
X: 72,836,833 (GRCm38) |
D311N |
probably benign |
Het |
| Isl2 |
G |
T |
9: 55,545,462 (GRCm38) |
G335C |
probably damaging |
Het |
| Kbtbd7 |
T |
C |
14: 79,428,612 (GRCm38) |
V628A |
probably damaging |
Het |
| Kmt2d |
T |
C |
15: 98,837,148 (GRCm38) |
M5378V |
unknown |
Het |
| Lrrc23 |
G |
T |
6: 124,778,819 (GRCm38) |
D75E |
probably benign |
Het |
| Mab21l3 |
G |
A |
3: 101,835,130 (GRCm38) |
T38M |
probably benign |
Het |
| Matn1 |
T |
C |
4: 130,950,011 (GRCm38) |
I177T |
possibly damaging |
Het |
| Mtor |
T |
C |
4: 148,453,037 (GRCm38) |
S60P |
probably benign |
Het |
| Naip6 |
T |
C |
13: 100,304,438 (GRCm38) |
E278G |
probably benign |
Het |
| Nsun6 |
T |
C |
2: 15,048,978 (GRCm38) |
I7V |
possibly damaging |
Het |
| Pabpc6 |
A |
T |
17: 9,668,147 (GRCm38) |
S492T |
probably benign |
Het |
| Pakap |
C |
T |
4: 57,757,627 (GRCm38) |
Q188* |
probably null |
Het |
| Pom121 |
A |
T |
5: 135,391,706 (GRCm38) |
V287D |
unknown |
Het |
| Ptprq |
A |
T |
10: 107,686,218 (GRCm38) |
F624Y |
probably damaging |
Het |
| Ptprr |
A |
G |
10: 116,188,317 (GRCm38) |
T178A |
probably benign |
Het |
| Ros1 |
A |
T |
10: 52,120,809 (GRCm38) |
Y1256N |
probably damaging |
Het |
| Scpep1 |
T |
C |
11: 88,941,328 (GRCm38) |
N192S |
possibly damaging |
Het |
| Serpina1f |
A |
G |
12: 103,694,006 (GRCm38) |
S6P |
possibly damaging |
Het |
| Sgca |
T |
A |
11: 94,972,287 (GRCm38) |
Q80L |
probably damaging |
Het |
| Skint6 |
A |
G |
4: 112,804,682 (GRCm38) |
L1235P |
possibly damaging |
Het |
| Slc23a2 |
A |
C |
2: 132,056,816 (GRCm38) |
N600K |
probably benign |
Het |
| Spata20 |
T |
C |
11: 94,483,395 (GRCm38) |
T350A |
probably benign |
Het |
| Syne1 |
G |
T |
10: 5,344,921 (GRCm38) |
Y1227* |
probably null |
Het |
| Unc13c |
T |
C |
9: 73,933,197 (GRCm38) |
Y124C |
probably benign |
Het |
| Usp40 |
G |
A |
1: 87,986,123 (GRCm38) |
T416I |
probably benign |
Het |
| Vmn1r200 |
T |
C |
13: 22,395,401 (GRCm38) |
W116R |
probably benign |
Het |
| Vps4a |
T |
C |
8: 107,039,219 (GRCm38) |
|
probably benign |
Het |
| Zfyve16 |
A |
G |
13: 92,492,522 (GRCm38) |
V1469A |
probably damaging |
Het |
|
| Other mutations in Pygm |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01743:Pygm
|
APN |
19 |
6,392,994 (GRCm38) |
splice site |
probably null |
|
|
IGL01827:Pygm
|
APN |
19 |
6,390,377 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02032:Pygm
|
APN |
19 |
6,388,087 (GRCm38) |
missense |
probably benign |
0.23 |
|
IGL02261:Pygm
|
APN |
19 |
6,388,271 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02431:Pygm
|
APN |
19 |
6,388,118 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02511:Pygm
|
APN |
19 |
6,385,688 (GRCm38) |
missense |
probably benign |
0.22 |
|
IGL02967:Pygm
|
APN |
19 |
6,393,838 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL03081:Pygm
|
APN |
19 |
6,388,821 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
R0336:Pygm
|
UTSW |
19 |
6,388,758 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0415:Pygm
|
UTSW |
19 |
6,391,366 (GRCm38) |
missense |
probably benign |
0.06 |
|
R0799:Pygm
|
UTSW |
19 |
6,386,018 (GRCm38) |
intron |
probably benign |
|
|
R1445:Pygm
|
UTSW |
19 |
6,389,887 (GRCm38) |
missense |
probably benign |
0.20 |
|
R1752:Pygm
|
UTSW |
19 |
6,391,034 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R1828:Pygm
|
UTSW |
19 |
6,397,607 (GRCm38) |
missense |
possibly damaging |
0.72 |
|
R2054:Pygm
|
UTSW |
19 |
6,388,155 (GRCm38) |
missense |
probably benign |
0.02 |
|
R2086:Pygm
|
UTSW |
19 |
6,391,481 (GRCm38) |
critical splice donor site |
probably null |
|
|
R2116:Pygm
|
UTSW |
19 |
6,386,408 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R2431:Pygm
|
UTSW |
19 |
6,393,785 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2516:Pygm
|
UTSW |
19 |
6,397,601 (GRCm38) |
missense |
probably benign |
0.20 |
|
R3938:Pygm
|
UTSW |
19 |
6,392,950 (GRCm38) |
missense |
probably benign |
0.42 |
|
R4609:Pygm
|
UTSW |
19 |
6,391,409 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
R4924:Pygm
|
UTSW |
19 |
6,393,724 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4995:Pygm
|
UTSW |
19 |
6,398,139 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5225:Pygm
|
UTSW |
19 |
6,389,464 (GRCm38) |
missense |
probably benign |
0.01 |
|
R5296:Pygm
|
UTSW |
19 |
6,384,579 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5437:Pygm
|
UTSW |
19 |
6,390,382 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5994:Pygm
|
UTSW |
19 |
6,398,043 (GRCm38) |
critical splice acceptor site |
probably null |
|
|
R6030:Pygm
|
UTSW |
19 |
6,388,812 (GRCm38) |
missense |
possibly damaging |
0.78 |
|
R6030:Pygm
|
UTSW |
19 |
6,388,812 (GRCm38) |
missense |
possibly damaging |
0.78 |
|
R6188:Pygm
|
UTSW |
19 |
6,397,937 (GRCm38) |
splice site |
probably null |
|
|
R6266:Pygm
|
UTSW |
19 |
6,398,139 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6799:Pygm
|
UTSW |
19 |
6,398,127 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6855:Pygm
|
UTSW |
19 |
6,393,757 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6856:Pygm
|
UTSW |
19 |
6,393,757 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6857:Pygm
|
UTSW |
19 |
6,393,757 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7223:Pygm
|
UTSW |
19 |
6,388,863 (GRCm38) |
missense |
probably benign |
|
|
R7256:Pygm
|
UTSW |
19 |
6,385,896 (GRCm38) |
missense |
probably benign |
0.01 |
|
R7263:Pygm
|
UTSW |
19 |
6,388,327 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7398:Pygm
|
UTSW |
19 |
6,385,936 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8093:Pygm
|
UTSW |
19 |
6,386,042 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8351:Pygm
|
UTSW |
19 |
6,388,087 (GRCm38) |
missense |
possibly damaging |
0.83 |
|
R8499:Pygm
|
UTSW |
19 |
6,390,362 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R8967:Pygm
|
UTSW |
19 |
6,384,714 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9331:Pygm
|
UTSW |
19 |
6,398,099 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9656:Pygm
|
UTSW |
19 |
6,388,157 (GRCm38) |
missense |
probably benign |
0.00 |
|
| Posted On |
2013-06-21 |
Incidental Mutation