Mutagenetix > Incidental Mutation

Incidental Mutation 'R6801:Trim12c'

533340

Institutional Source

Beutler Lab

Gene Symbol

Trim12c

Ensembl Gene

ENSMUSG00000057143

Gene Name

tripartite motif-containing 12C

Synonyms

Trim12-2, 9230105E10Rik

MMRRC Submission

044914-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.065) question?

Stock #

R6801 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

103987961-104002569 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 103997337 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Glutamic Acid at position 73 (V73E)

Ref Sequence

ENSEMBL: ENSMUSP00000116775 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000059037] [ENSMUST00000130139]

AlphaFold

D3Z3L3

Predicted Effect

probably damaging
Transcript: ENSMUST00000059037
AA Change: V73E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000060100
Gene: ENSMUSG00000057143
AA Change: V73E

Domain	Start	End	E-Value	Type
RING	15	58	5.51e-7	SMART
BBOX	91	132	4.83e-12	SMART
low complexity region	196	209	N/A	INTRINSIC
Pfam:SPRY	351	493	8.7e-14	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000130139
AA Change: V73E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000116775
Gene: ENSMUSG00000057143
AA Change: V73E

Domain	Start	End	E-Value	Type
RING	15	58	5.51e-7	SMART
BBOX	91	132	4.83e-12	SMART
low complexity region	196	209	N/A	INTRINSIC

Meta Mutation Damage Score

0.8595

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.7%
20x: 96.8%

Validation Efficiency

100% (49/49)

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam3	T	A	8: 25,174,680 (GRCm39)	Y695F	possibly damaging	Het
Arhgap20	A	G	9: 51,759,892 (GRCm39)	D545G	probably damaging	Het
Arhgef11	A	G	3: 87,643,159 (GRCm39)	E1457G	possibly damaging	Het
Atp2b4	T	A	1: 133,655,524 (GRCm39)	I747F	probably damaging	Het
Bche	T	A	3: 73,609,133 (GRCm39)	I98L	probably benign	Het
C2cd6	TC	T	1: 59,133,742 (GRCm39)		probably null	Het
Ccdc90b	A	G	7: 92,216,943 (GRCm39)	T72A	probably benign	Het
Chrd	A	G	16: 20,554,497 (GRCm39)	E352G	possibly damaging	Het
Csmd2	A	G	4: 128,277,743 (GRCm39)	E953G	probably benign	Het
Dchs2	T	A	3: 83,035,841 (GRCm39)	M196K	probably benign	Het
Ddx10	G	A	9: 53,159,207 (GRCm39)	Q33*	probably null	Het
Dennd4b	T	A	3: 90,176,086 (GRCm39)	V201E	probably damaging	Het
Fbn2	T	A	18: 58,246,420 (GRCm39)	H494L	probably benign	Het
Fbxw13	G	A	9: 109,023,795 (GRCm39)	A83V	probably null	Het
Fxr1	A	G	3: 34,108,452 (GRCm39)	D321G	possibly damaging	Het
Galm	A	G	17: 80,489,053 (GRCm39)	H233R	probably benign	Het
Gm7298	A	G	6: 121,752,768 (GRCm39)	T837A	probably benign	Het
Gmppa	C	G	1: 75,418,391 (GRCm39)	S258C	possibly damaging	Het
Hk1	T	G	10: 62,116,910 (GRCm39)	E645A	probably damaging	Het
Igkv1-132	A	G	6: 67,737,324 (GRCm39)	T97A	probably damaging	Het
Kcnc1	T	C	7: 46,084,716 (GRCm39)	F547L	probably damaging	Het
Lama5	G	A	2: 179,833,455 (GRCm39)	P1519L	probably damaging	Het
Lingo2	T	A	4: 35,709,566 (GRCm39)	E138V	probably damaging	Het
Myb	T	C	10: 21,020,865 (GRCm39)		probably null	Het
Mybl1	A	G	1: 9,753,353 (GRCm39)	V243A	probably benign	Het
Mylk4	C	T	13: 32,912,393 (GRCm39)	S189N	probably benign	Het
Or13c7	T	A	4: 43,855,206 (GRCm39)	L299*	probably null	Het
Or2y16	A	G	11: 49,335,169 (GRCm39)	M164V	probably benign	Het
Or4k77	A	T	2: 111,199,394 (GRCm39)	Q139L	probably benign	Het
Or4x12-ps1	A	T	2: 89,915,953 (GRCm39)	I284N	probably damaging	Het
Or5w1b	A	G	2: 87,475,667 (GRCm39)	Y267H	probably benign	Het
Or8g19	A	T	9: 39,055,506 (GRCm39)	I37F	probably benign	Het
Oxld1	A	T	11: 120,347,650 (GRCm39)	D182E	probably damaging	Het
Phf13	A	T	4: 152,076,017 (GRCm39)	L295Q	probably damaging	Het
Prrc2c	TTGCTGCTGCTGCTGCTGCTGCTGCTGC	TTGCTGCTGCTGCTGCTGCTGCTGC	1: 162,536,630 (GRCm39)		probably benign	Het
Prss33	A	G	17: 24,053,813 (GRCm39)	L88P	possibly damaging	Het
Ralgds	A	G	2: 28,438,448 (GRCm39)	Y596C	probably damaging	Het
Rftn2	A	G	1: 55,233,418 (GRCm39)	I379T	possibly damaging	Het
Rnf214	C	T	9: 45,807,403 (GRCm39)	E267K	probably damaging	Het
Rpp14	T	C	14: 8,083,717 (GRCm38)		probably benign	Het
Rpusd2	A	G	2: 118,865,876 (GRCm39)	Y191C	probably damaging	Het
Serpinb9c	T	A	13: 33,341,807 (GRCm39)	M1L	probably benign	Het
Shroom3	A	G	5: 93,088,795 (GRCm39)	D434G	probably damaging	Het
Smc5	G	A	19: 23,192,010 (GRCm39)	S888L	probably benign	Het
Suv39h2	C	T	2: 3,465,458 (GRCm39)	R299K	probably benign	Het
Trappc4	A	T	9: 44,315,685 (GRCm39)	I176N	probably damaging	Het
Vmn2r111	T	C	17: 22,778,032 (GRCm39)	N549S	possibly damaging	Het

Other mutations in Trim12c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01612:Trim12c	APN	7	103,997,422 (GRCm39)	missense	possibly damaging	0.81
IGL01645:Trim12c	APN	7	103,994,261 (GRCm39)	nonsense	probably null
IGL01737:Trim12c	APN	7	103,997,269 (GRCm39)	missense	probably damaging	1.00
IGL02184:Trim12c	APN	7	103,997,430 (GRCm39)	missense	probably benign	0.00
IGL02309:Trim12c	APN	7	103,994,163 (GRCm39)	missense	possibly damaging	0.72
IGL02323:Trim12c	APN	7	103,997,473 (GRCm39)	missense	probably benign	0.00
IGL02656:Trim12c	APN	7	103,990,410 (GRCm39)	missense	probably damaging	1.00
R0127:Trim12c	UTSW	7	103,990,113 (GRCm39)	splice site	probably null
R0554:Trim12c	UTSW	7	103,994,169 (GRCm39)	missense	probably damaging	0.96
R1480:Trim12c	UTSW	7	103,997,451 (GRCm39)	missense	probably damaging	1.00
R1501:Trim12c	UTSW	7	103,990,095 (GRCm39)	unclassified	probably benign
R2058:Trim12c	UTSW	7	103,997,398 (GRCm39)	missense	possibly damaging	0.81
R2059:Trim12c	UTSW	7	103,997,398 (GRCm39)	missense	possibly damaging	0.81
R3838:Trim12c	UTSW	7	103,990,075 (GRCm39)	unclassified	probably benign
R3870:Trim12c	UTSW	7	103,997,544 (GRCm39)	missense	probably benign	0.00
R4896:Trim12c	UTSW	7	103,990,155 (GRCm39)	missense	probably damaging	0.99
R6288:Trim12c	UTSW	7	103,995,936 (GRCm39)	missense	probably benign	0.19
R6522:Trim12c	UTSW	7	103,997,531 (GRCm39)	missense	probably benign	0.38
R6562:Trim12c	UTSW	7	103,994,341 (GRCm39)	splice site	probably null
R7016:Trim12c	UTSW	7	103,997,413 (GRCm39)	missense
R7811:Trim12c	UTSW	7	103,990,469 (GRCm39)	missense	unknown
R8076:Trim12c	UTSW	7	103,990,037 (GRCm39)	missense	unknown
R8147:Trim12c	UTSW	7	103,991,165 (GRCm39)	missense	unknown
R8680:Trim12c	UTSW	7	103,997,271 (GRCm39)	missense
R9295:Trim12c	UTSW	7	103,990,391 (GRCm39)	missense	unknown
R9296:Trim12c	UTSW	7	103,994,185 (GRCm39)	missense
X0062:Trim12c	UTSW	7	103,995,887 (GRCm39)	missense	probably benign	0.13
Z1176:Trim12c	UTSW	7	103,990,343 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- CCACCTCTTCAATGAGAGCTG -3'
(R):5'- TCACAGCAACTATGGCTTCAC -3'

Sequencing Primer
(F):5'- ACCTCTTCAATGAGAGCTGTTTTG -3'
(R):5'- TTTAAAGGAGGAAGTGACCTGTCCTC -3'

Posted On

2018-09-12