Mutagenetix > Incidental Mutation

Incidental Mutation 'R6807:Bicdl1'

533588

Institutional Source

Beutler Lab

Gene Symbol

Bicdl1

Ensembl Gene

ENSMUSG00000041609

Gene Name

BICD family like cargo adaptor 1

Synonyms

2210403N09Rik, Ccdc64, BICDR-1

MMRRC Submission

044920-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.304) question?

Stock #

R6807 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

115648175-115731621 bp(-) (GRCm38)

Type of Mutation

critical splice donor site (1 bp from exon)

DNA Base Change (assembly)

C to T at 115672143 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000119015 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000055408] [ENSMUST00000141950] [ENSMUST00000148276]

AlphaFold

A0JNT9

Predicted Effect

probably benign
Transcript: ENSMUST00000055408

SMART Domains

Protein: ENSMUSP00000053547
Gene: ENSMUSG00000041609

Domain	Start	End	E-Value	Type
low complexity region	47	68	N/A	INTRINSIC
Pfam:HAP1_N	97	162	2e-11	PFAM
low complexity region	305	316	N/A	INTRINSIC
low complexity region	336	374	N/A	INTRINSIC
low complexity region	389	410	N/A	INTRINSIC
coiled coil region	467	529	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000141950

SMART Domains

Protein: ENSMUSP00000119015
Gene: ENSMUSG00000041609

Domain	Start	End	E-Value	Type
Pfam:HAP1_N	35	99	4.5e-11	PFAM
coiled coil region	192	236	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000148276

SMART Domains

Protein: ENSMUSP00000119664
Gene: ENSMUSG00000041609

Domain	Start	End	E-Value	Type
coiled coil region	1	110	N/A	INTRINSIC
low complexity region	120	141	N/A	INTRINSIC
coiled coil region	178	284	N/A	INTRINSIC

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.7%
20x: 96.9%

Validation Efficiency

100% (72/72)

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acaca	A	G	11: 84,391,530 (GRCm38)	T2158A	probably benign	Het
Apeh	G	A	9: 108,092,679 (GRCm38)	H186Y	probably damaging	Het
Apol7a	T	C	15: 77,393,320 (GRCm38)		probably null	Het
Bop1	T	A	15: 76,454,983 (GRCm38)	Q362L	probably damaging	Het
C4b	T	C	17: 34,730,956 (GRCm38)	D1418G	probably benign	Het
Cdh23	A	G	10: 60,378,871 (GRCm38)	V1455A	possibly damaging	Het
Cecr2	T	G	6: 120,734,542 (GRCm38)		probably null	Het
Cer1	T	C	4: 82,882,815 (GRCm38)	S204G	probably benign	Het
Cers3	G	C	7: 66,764,220 (GRCm38)	W15C	probably damaging	Het
Csn1s2a	A	T	5: 87,781,872 (GRCm38)	H110L	probably benign	Het
Dnah10	T	G	5: 124,790,000 (GRCm38)		probably null	Het
Dync2h1	T	C	9: 7,041,718 (GRCm38)	N3315S	probably benign	Het
Dynlrb2	T	C	8: 116,507,560 (GRCm38)	M21T	probably benign	Het
Emilin1	T	A	5: 30,915,527 (GRCm38)	F103I	probably benign	Het
Esrra	T	A	19: 6,911,774 (GRCm38)	M416L	probably benign	Het
Etaa1	C	A	11: 17,952,680 (GRCm38)	V86L	probably benign	Het
Extl3	A	G	14: 65,076,762 (GRCm38)	S324P	probably damaging	Het
Fam90a1a	T	C	8: 21,963,352 (GRCm38)	V241A	probably benign	Het
Fat4	C	A	3: 38,982,440 (GRCm38)	Q3414K	probably benign	Het
Gm12166	T	C	11: 46,052,032 (GRCm38)	Q88R	probably damaging	Het
Gm13101	A	G	4: 143,965,011 (GRCm38)	S381P	probably damaging	Het
Gpr162	C	T	6: 124,861,201 (GRCm38)	R162H	probably damaging	Het
Gpr21	T	A	2: 37,517,962 (GRCm38)	Y173*	probably null	Het
Gprc6a	G	A	10: 51,626,745 (GRCm38)	Q341*	probably null	Het
Herc2	T	A	7: 56,164,922 (GRCm38)	S2674R	probably damaging	Het
Hnrnpdl	A	T	5: 100,039,136 (GRCm38)	H9Q	probably null	Het
Hps1	A	G	19: 42,770,778 (GRCm38)	V125A	possibly damaging	Het
Iba57	G	T	11: 59,158,614 (GRCm38)	P243H	probably damaging	Het
Incenp	G	T	19: 9,877,756 (GRCm38)	A597E	unknown	Het
Kat6a	T	A	8: 22,940,368 (GRCm38)	M1913K	unknown	Het
Klb	G	A	5: 65,379,534 (GRCm38)	V736M	probably damaging	Het
Krt33a	T	A	11: 100,012,383 (GRCm38)	T278S	possibly damaging	Het
Krt73	T	G	15: 101,796,407 (GRCm38)	E348A	probably damaging	Het
Lig3	T	A	11: 82,783,751 (GRCm38)	D134E	probably benign	Het
Limd2	T	C	11: 106,158,945 (GRCm38)	T73A	probably benign	Het
Lrpprc	A	G	17: 84,749,103 (GRCm38)	S787P	possibly damaging	Het
Macf1	A	G	4: 123,374,415 (GRCm38)	M6735T	probably damaging	Het
Mapkbp1	C	A	2: 120,021,159 (GRCm38)	Q861K	probably damaging	Het
Mc4r	T	A	18: 66,859,856 (GRCm38)	N62I	probably damaging	Het
Metap1d	G	A	2: 71,511,514 (GRCm38)	V151I	probably damaging	Het
Nek2	T	C	1: 191,822,617 (GRCm38)	V147A	probably damaging	Het
Nlrp1b	A	T	11: 71,217,704 (GRCm38)	W324R	probably damaging	Het
Nol4l	G	T	2: 153,483,826 (GRCm38)	S113*	probably null	Het
Oc90	T	A	15: 65,889,614 (GRCm38)	D185V	probably damaging	Het
Olfr1025-ps1	A	T	2: 85,918,038 (GRCm38)	T38S	possibly damaging	Het
Olfr1243	G	A	2: 89,527,588 (GRCm38)	T274M	probably damaging	Het
Olfr150	A	T	9: 39,737,618 (GRCm38)	K268*	probably null	Het
Olfr437	T	C	6: 43,167,238 (GRCm38)	F60S	probably damaging	Het
Olfr470	T	A	7: 107,845,590 (GRCm38)	T48S	possibly damaging	Het
Olfr56	G	A	11: 49,134,978 (GRCm38)	R262K	probably damaging	Het
Pcdha8	A	G	18: 36,994,348 (GRCm38)	T628A	probably damaging	Het
Pcsk5	A	T	19: 17,572,622 (GRCm38)		probably null	Het
Pdgfrb	T	C	18: 61,078,649 (GRCm38)		probably null	Het
Pgm3	A	T	9: 86,556,502 (GRCm38)		probably null	Het
Pin1rt1	T	A	2: 104,714,718 (GRCm38)	Y23F	probably benign	Het
Poli	T	A	18: 70,530,151 (GRCm38)		probably null	Het
Pom121	C	A	5: 135,381,124 (GRCm38)		probably benign	Het
Ppp2r5c	A	G	12: 110,569,022 (GRCm38)	D407G	possibly damaging	Het
Rgs12	A	G	5: 35,023,171 (GRCm38)	D116G	probably null	Het
Serpina3b	A	T	12: 104,132,992 (GRCm38)	E255D	probably benign	Het
Slc46a1	A	G	11: 78,466,964 (GRCm38)	H281R	probably damaging	Het
Spata6	T	C	4: 111,784,815 (GRCm38)	I294T	probably benign	Het
Srgap1	T	A	10: 121,828,726 (GRCm38)		probably null	Het
Stag1	C	T	9: 100,944,850 (GRCm38)	R957C	probably damaging	Het
Stk35	G	A	2: 129,801,653 (GRCm38)	E186K	probably damaging	Het
Tenm4	G	A	7: 96,895,271 (GRCm38)	V2165I	probably damaging	Het
Tenm4	G	A	7: 96,553,496 (GRCm38)	R106H	probably benign	Het
Tmem53	T	C	4: 117,268,331 (GRCm38)	S207P	probably benign	Het
Ugt2a3	A	G	5: 87,336,758 (GRCm38)	F136L	probably benign	Het
Unc13d	T	C	11: 116,066,751 (GRCm38)	K795E	probably damaging	Het
Zbtb11	C	A	16: 55,990,502 (GRCm38)	T341K	probably benign	Het

Other mutations in Bicdl1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01434:Bicdl1	APN	5	115,670,156 (GRCm38)	nonsense	probably null
IGL01902:Bicdl1	APN	5	115,651,874 (GRCm38)	missense	probably damaging	1.00
IGL02416:Bicdl1	APN	5	115,663,885 (GRCm38)	missense	probably damaging	1.00
IGL02417:Bicdl1	APN	5	115,673,158 (GRCm38)	missense	probably damaging	1.00
IGL03088:Bicdl1	APN	5	115,663,822 (GRCm38)	missense	possibly damaging	0.83
IGL03275:Bicdl1	APN	5	115,731,160 (GRCm38)	missense	probably damaging	1.00
bargain	UTSW	5	115,670,153 (GRCm38)	critical splice donor site	probably null
R6807_Bicdl1_588	UTSW	5	115,672,143 (GRCm38)	critical splice donor site	probably null
R0837:Bicdl1	UTSW	5	115,731,292 (GRCm38)	missense	probably benign	0.06
R0924:Bicdl1	UTSW	5	115,661,528 (GRCm38)	splice site	probably benign
R1581:Bicdl1	UTSW	5	115,651,267 (GRCm38)	unclassified	probably benign
R1589:Bicdl1	UTSW	5	115,651,266 (GRCm38)	unclassified	probably benign
R1669:Bicdl1	UTSW	5	115,656,016 (GRCm38)	missense	possibly damaging	0.84
R2076:Bicdl1	UTSW	5	115,655,928 (GRCm38)	missense	probably damaging	0.96
R2089:Bicdl1	UTSW	5	115,724,579 (GRCm38)	missense	probably damaging	1.00
R2091:Bicdl1	UTSW	5	115,724,579 (GRCm38)	missense	probably damaging	1.00
R2091:Bicdl1	UTSW	5	115,724,579 (GRCm38)	missense	probably damaging	1.00
R4772:Bicdl1	UTSW	5	115,661,478 (GRCm38)	missense	probably benign	0.36
R6185:Bicdl1	UTSW	5	115,670,153 (GRCm38)	critical splice donor site	probably null
R7107:Bicdl1	UTSW	5	115,670,170 (GRCm38)	missense	probably benign	0.03
R7157:Bicdl1	UTSW	5	115,651,857 (GRCm38)	missense	possibly damaging	0.92
R7205:Bicdl1	UTSW	5	115,670,281 (GRCm38)	missense	probably damaging	1.00
R7485:Bicdl1	UTSW	5	115,663,786 (GRCm38)	nonsense	probably null
R7781:Bicdl1	UTSW	5	115,661,487 (GRCm38)	missense	probably damaging	1.00
R8236:Bicdl1	UTSW	5	115,649,559 (GRCm38)	missense	probably benign	0.28
R8816:Bicdl1	UTSW	5	115,724,745 (GRCm38)	missense	probably damaging	1.00
R9320:Bicdl1	UTSW	5	115,724,710 (GRCm38)	missense	probably damaging	0.96
R9527:Bicdl1	UTSW	5	115,673,129 (GRCm38)	missense	possibly damaging	0.96

Predicted Primers

PCR Primer
(F):5'- AAACACTCCTGGGAAACTGG -3'
(R):5'- TTGCCTGGTGAGACTCTGAGAG -3'

Sequencing Primer
(F):5'- AAACTGGTTCCTGAGGGGC -3'
(R):5'- AAGCCCCTGTCCTGTGATGAAG -3'

Posted On

2018-09-12