Incidental Mutation 'R6867:Igdcc3'
ID535981
Institutional Source Beutler Lab
Gene Symbol Igdcc3
Ensembl Gene ENSMUSG00000032394
Gene Nameimmunoglobulin superfamily, DCC subclass, member 3
SynonymsPunc, WI-14920, 2810401C09Rik
MMRRC Submission
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.170) question?
Stock #R6867 (G1)
Quality Score225.009
Status Validated
Chromosome9
Chromosomal Location65141189-65185872 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 65183038 bp
ZygosityHeterozygous
Amino Acid Change Asparagine to Aspartic acid at position 610 (N610D)
Ref Sequence ENSEMBL: ENSMUSP00000034961 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000034961] [ENSMUST00000217371]
Predicted Effect probably damaging
Transcript: ENSMUST00000034961
AA Change: N610D

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000034961
Gene: ENSMUSG00000032394
AA Change: N610D

DomainStartEndE-ValueType
signal peptide 1 47 N/A INTRINSIC
IGc2 66 136 1.28e-10 SMART
IGc2 163 228 4.77e-10 SMART
IGc2 262 326 8.06e-8 SMART
IGc2 354 419 3.17e-15 SMART
FN3 436 519 1.2e-13 SMART
FN3 534 615 2.66e-6 SMART
transmembrane domain 631 653 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000217371
AA Change: N610D

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.4%
  • 20x: 98.0%
Validation Efficiency 100% (43/43)
MGI Phenotype PHENOTYPE: Homozygotes for a gene trap mutation exhibit reduced performance on the rotarod, suggesting impaired cerebellar function. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 42 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700021F05Rik ACTGCACCACCT ACT 10: 43,532,725 probably benign Het
Apold1 T C 6: 134,984,056 S158P possibly damaging Het
Cep162 A T 9: 87,217,081 L788* probably null Het
Cyp7b1 T C 3: 18,097,230 Y273C probably damaging Het
Dlx1 C A 2: 71,531,009 N122K probably damaging Het
Dock10 A T 1: 80,531,259 I1605K probably damaging Het
Enox1 T C 14: 77,699,299 probably null Het
F3 T C 3: 121,729,371 S77P possibly damaging Het
Fam186a T A 15: 99,945,850 I838L unknown Het
Flrt2 T C 12: 95,779,382 F165L probably damaging Het
Gcgr T A 11: 120,536,469 V135E possibly damaging Het
Gm6741 T C 17: 91,236,911 L34P probably benign Het
Gna13 T C 11: 109,396,122 M257T possibly damaging Het
Hsd11b2 G A 8: 105,522,317 R147H probably benign Het
Hydin A G 8: 110,539,802 Y2865C probably benign Het
Ipp T A 4: 116,510,409 probably null Het
Kdm5d A G Y: 927,425 T682A probably benign Het
Megf8 A G 7: 25,331,035 Y471C probably benign Het
Mprip T C 11: 59,749,630 probably null Het
Myrfl T A 10: 116,848,282 R179* probably null Het
Nek1 C A 8: 61,072,330 Q601K possibly damaging Het
Neurod4 C G 10: 130,270,714 K230N probably damaging Het
Olfr1037 A G 2: 86,085,738 I13T possibly damaging Het
Olfr374 C T 8: 72,109,863 T99I possibly damaging Het
Orc3 A G 4: 34,605,539 L114P probably damaging Het
Rag1 T C 2: 101,641,947 D950G probably damaging Het
Rasgrp2 G A 19: 6,413,183 S504N probably benign Het
Rgl2 A G 17: 33,932,687 D235G probably benign Het
Slc35e2 A G 4: 155,618,700 E390G probably benign Het
Slc39a1 T A 3: 90,249,452 V105E probably damaging Het
Tesk2 T A 4: 116,801,798 C291S probably damaging Het
Tmco3 T A 8: 13,313,927 F83Y probably damaging Het
Trim25 T C 11: 89,010,887 I336T probably benign Het
Ush2a A G 1: 188,910,973 I4177M probably damaging Het
Veph1 T A 3: 66,255,037 T67S probably damaging Het
Vmn2r43 A G 7: 8,255,126 F363L probably benign Het
Vps28 A T 15: 76,622,671 I109N probably damaging Het
Vps50 A G 6: 3,517,835 D91G probably benign Het
Wdr20 T C 12: 110,793,699 F340L probably benign Het
Wdr95 A G 5: 149,580,923 probably null Het
Zfand6 A G 7: 84,615,914 V193A probably damaging Het
Zfp703 C A 8: 26,978,640 P111T probably damaging Het
Other mutations in Igdcc3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00430:Igdcc3 APN 9 65182019 missense probably damaging 1.00
IGL01310:Igdcc3 APN 9 65178442 missense probably damaging 0.98
IGL01545:Igdcc3 APN 9 65180073 missense probably damaging 1.00
IGL01576:Igdcc3 APN 9 65177870 missense probably damaging 1.00
IGL01909:Igdcc3 APN 9 65144537 missense probably damaging 1.00
IGL02039:Igdcc3 APN 9 65183880 missense probably benign 0.18
IGL02055:Igdcc3 APN 9 65181280 missense possibly damaging 0.92
IGL02565:Igdcc3 APN 9 65180188 missense probably damaging 1.00
R1776:Igdcc3 UTSW 9 65182752 nonsense probably null
R4731:Igdcc3 UTSW 9 65181997 missense probably damaging 1.00
R5413:Igdcc3 UTSW 9 65177515 missense possibly damaging 0.61
R5487:Igdcc3 UTSW 9 65181584 missense probably damaging 1.00
R5744:Igdcc3 UTSW 9 65141488 small deletion probably benign
R6578:Igdcc3 UTSW 9 65182019 missense probably damaging 1.00
R6992:Igdcc3 UTSW 9 65181571 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AAGCTGTTTTACCGCCCAGTC -3'
(R):5'- GCCTGAGGCTACAGATACTG -3'

Sequencing Primer
(F):5'- AGTGCAACCTCCTTCACTGG -3'
(R):5'- TGAGGCTACAGATACTGTCCTC -3'
Posted On2018-10-18