Mutagenetix > Incidental Mutation

Incidental Mutation 'R6877:Zic5'

536481

Institutional Source

Beutler Lab

Gene Symbol

Zic5

Ensembl Gene

ENSMUSG00000041703

Gene Name

zinc finger protein of the cerebellum 5

Synonyms

odd-paired related, 1700049L20Rik, Opr

MMRRC Submission

044973-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R6877 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

122696572-122703127 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 122697100 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 505 (T505I)

Ref Sequence

ENSEMBL: ENSMUSP00000035754 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039118]

AlphaFold

no structure available at present

Predicted Effect

unknown
Transcript: ENSMUST00000039118
AA Change: T505I

SMART Domains

Protein: ENSMUSP00000035754
Gene: ENSMUSG00000041703
AA Change: T505I

Domain	Start	End	E-Value	Type
low complexity region	13	28	N/A	INTRINSIC
low complexity region	116	154	N/A	INTRINSIC
low complexity region	160	171	N/A	INTRINSIC
low complexity region	182	192	N/A	INTRINSIC
low complexity region	200	214	N/A	INTRINSIC
low complexity region	284	303	N/A	INTRINSIC
low complexity region	309	353	N/A	INTRINSIC
ZnF_C2H2	390	408	2.2e2	SMART
ZnF_C2H2	417	444	2.14e0	SMART
ZnF_C2H2	450	474	8.02e-5	SMART
ZnF_C2H2	480	504	2.53e-2	SMART
ZnF_C2H2	510	534	7.49e-5	SMART

Meta Mutation Damage Score

0.2094

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.2%

Validation Efficiency

94% (47/50)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the ZIC family of C2H2-type zinc finger proteins. Members of this family are important during development, and have been associated X-linked visceral heterotaxy and holoprosencephaly type 5. This gene is closely linked to a gene encoding zinc finger protein of the cerebellum 2, a related family member on chromosome 13. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice display postnatal lethality and reduced life spans with exencephaly, abnormal cerebral cortex and diencephalon morphology, abnormal gait and posture, and impaired growth. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam34l	T	C	8: 44,078,274 (GRCm39)	H650R	probably benign	Het
Adgrl2	T	C	3: 148,522,922 (GRCm39)	Y1367C	probably damaging	Het
Aqr	A	T	2: 113,947,052 (GRCm39)	C1043*	probably null	Het
Arhgef17	A	G	7: 100,530,548 (GRCm39)	S1413P	probably damaging	Het
AU041133	A	G	10: 81,987,405 (GRCm39)	T352A	probably benign	Het
Bcl7a	A	G	5: 123,489,958 (GRCm39)	T41A	probably damaging	Het
Btbd10	A	T	7: 112,921,967 (GRCm39)	F298Y	probably damaging	Het
Ccdc57	G	A	11: 120,764,528 (GRCm39)	T749I	probably benign	Het
Clcnkb	T	C	4: 141,132,143 (GRCm39)	N646S	probably benign	Het
Dcst1	T	C	3: 89,257,667 (GRCm39)	D701G	probably benign	Het
Dnah14	C	A	1: 181,455,997 (GRCm39)	T1001K	possibly damaging	Het
Dnah8	G	T	17: 30,965,933 (GRCm39)	G2422W	probably damaging	Het
Dyrk2	A	T	10: 118,696,328 (GRCm39)	I310N	probably damaging	Het
Eif5b	A	T	1: 38,089,320 (GRCm39)	N1099Y	probably damaging	Het
Elp2	T	A	18: 24,768,033 (GRCm39)	N762K	probably benign	Het
Esco2	A	G	14: 66,068,494 (GRCm39)	V272A	probably benign	Het
Fat3	A	C	9: 15,910,564 (GRCm39)	S1813A	probably benign	Het
Igf2r	A	G	17: 12,916,228 (GRCm39)	V1710A	probably damaging	Het
Iqgap3	GGAGAG	GGAG	3: 88,020,078 (GRCm39)		probably null	Het
Kcnk5	T	C	14: 20,194,784 (GRCm39)	T185A	possibly damaging	Het
Litafd	G	A	16: 8,501,173 (GRCm39)	V10I	unknown	Het
Muc5ac	C	T	7: 141,363,481 (GRCm39)		probably benign	Het
Nol4	A	T	18: 22,852,186 (GRCm39)	C460S	probably benign	Het
Ntaq1	C	A	15: 58,017,074 (GRCm39)	P163Q	probably damaging	Het
Or10g3b	T	A	14: 52,587,270 (GRCm39)	I78F	possibly damaging	Het
Or4f14b	T	C	2: 111,775,184 (GRCm39)	I206V	probably benign	Het
Ovch2	G	A	7: 107,389,315 (GRCm39)	A371V	probably benign	Het
Pcdhb4	A	G	18: 37,442,625 (GRCm39)	D645G	probably damaging	Het
Pcnt	A	C	10: 76,269,851 (GRCm39)	S207A	possibly damaging	Het
Pex1	A	T	5: 3,685,505 (GRCm39)	Q1211L	probably benign	Het
Pnn	A	G	12: 59,115,553 (GRCm39)	E99G	probably damaging	Het
Prkrip1	A	T	5: 136,218,478 (GRCm39)		probably null	Het
Rnf133	A	G	6: 23,649,486 (GRCm39)	F191L	probably benign	Het
Scn10a	T	C	9: 119,438,848 (GRCm39)	T1674A	probably damaging	Het
Sdccag8	G	A	1: 176,839,501 (GRCm39)	V682M	probably damaging	Het
Spi1	T	C	2: 90,944,741 (GRCm39)	L162P	probably damaging	Het
Sptan1	C	G	2: 29,920,985 (GRCm39)	N2432K	probably damaging	Het
Stx2	A	G	5: 129,064,884 (GRCm39)	V271A	probably benign	Het
Sumf2	G	A	5: 129,878,867 (GRCm39)	D68N	probably damaging	Het
Tsc22d4	A	G	5: 137,760,855 (GRCm39)	E92G	possibly damaging	Het
Ube3c	G	T	5: 29,792,316 (GRCm39)	R37L	probably benign	Het
Ubr5	A	G	15: 38,002,814 (GRCm39)	S1446P	probably damaging	Het
Veph1	T	C	3: 66,162,505 (GRCm39)	N51S	probably damaging	Het
Vmn1r82	T	C	7: 12,039,290 (GRCm39)	F70L	possibly damaging	Het
Vmn2r92	A	G	17: 18,389,084 (GRCm39)	N466S	probably damaging	Het
Vwf	T	A	6: 125,634,164 (GRCm39)	V2153D	possibly damaging	Het
Yeats2	A	G	16: 19,998,344 (GRCm39)	T300A	probably benign	Het
Zc3h12d	G	T	10: 7,715,735 (GRCm39)	R46L	probably damaging	Het
Zfp516	T	C	18: 82,973,916 (GRCm39)	I38T	probably damaging	Het
Zpld1	C	T	16: 55,072,034 (GRCm39)	G75E	probably damaging	Het

Other mutations in Zic5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02157:Zic5	APN	14	122,696,924 (GRCm39)	missense	unknown
Ezekiel	UTSW	14	122,702,566 (GRCm39)	missense	unknown
R0227:Zic5	UTSW	14	122,697,073 (GRCm39)	missense	unknown
R0646:Zic5	UTSW	14	122,701,351 (GRCm39)	missense	unknown
R1327:Zic5	UTSW	14	122,697,191 (GRCm39)	splice site	probably benign
R1387:Zic5	UTSW	14	122,696,897 (GRCm39)	missense	unknown
R1665:Zic5	UTSW	14	122,696,939 (GRCm39)	missense	unknown
R2020:Zic5	UTSW	14	122,702,242 (GRCm39)	missense	unknown
R2571:Zic5	UTSW	14	122,696,890 (GRCm39)	missense	unknown
R4241:Zic5	UTSW	14	122,702,075 (GRCm39)	missense	probably benign	0.03
R4610:Zic5	UTSW	14	122,702,212 (GRCm39)	missense	probably damaging	0.98
R4706:Zic5	UTSW	14	122,696,969 (GRCm39)	missense	unknown
R5496:Zic5	UTSW	14	122,696,755 (GRCm39)	missense	unknown
R6178:Zic5	UTSW	14	122,696,748 (GRCm39)	missense	unknown
R6189:Zic5	UTSW	14	122,702,386 (GRCm39)	missense	unknown
R6332:Zic5	UTSW	14	122,697,161 (GRCm39)	missense	unknown
R6485:Zic5	UTSW	14	122,697,052 (GRCm39)	missense	unknown
R6564:Zic5	UTSW	14	122,696,833 (GRCm39)	missense	unknown
R6677:Zic5	UTSW	14	122,702,566 (GRCm39)	missense	unknown
R6977:Zic5	UTSW	14	122,696,967 (GRCm39)	small deletion	probably benign
R6977:Zic5	UTSW	14	122,696,960 (GRCm39)	missense	unknown
R6978:Zic5	UTSW	14	122,696,967 (GRCm39)	small deletion	probably benign
R6978:Zic5	UTSW	14	122,696,960 (GRCm39)	missense	unknown
R6996:Zic5	UTSW	14	122,702,080 (GRCm39)	missense	probably benign	0.02
R7713:Zic5	UTSW	14	122,701,525 (GRCm39)	missense	unknown
R8492:Zic5	UTSW	14	122,702,474 (GRCm39)	missense	unknown
R9612:Zic5	UTSW	14	122,697,100 (GRCm39)	missense	unknown
R9632:Zic5	UTSW	14	122,701,787 (GRCm39)	missense	unknown
R9688:Zic5	UTSW	14	122,701,435 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- CATACCACTCATTGAGGTTGGTC -3'
(R):5'- GGATGCACCCCTAGTTCTAATC -3'

Sequencing Primer
(F):5'- ACAGAGTGCTGGATCGACTC -3'
(R):5'- GCACCCCTAGTTCTAATCTAAGATTG -3'

Posted On

2018-10-18