Mutagenetix > Incidental Mutation

Incidental Mutation 'R6888:Odf2l'

537031

Institutional Source

Beutler Lab

Gene Symbol

Odf2l

Ensembl Gene

ENSMUSG00000028256

Gene Name

outer dense fiber of sperm tails 2-like

Synonyms

4733401D09Rik, 9630045K08Rik

MMRRC Submission

044982-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.171) question?

Stock #

R6888 (G1)

Quality Score

156.008

Status

Not validated

Chromosome

Chromosomal Location

144824349-144859676 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to C at 144854379 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029920] [ENSMUST00000098538] [ENSMUST00000098539] [ENSMUST00000106192] [ENSMUST00000200353]

AlphaFold

Q9D478

Predicted Effect

probably null
Transcript: ENSMUST00000029920

SMART Domains

Protein: ENSMUSP00000029920
Gene: ENSMUSG00000028256

Domain	Start	End	E-Value	Type
coiled coil region	31	58	N/A	INTRINSIC
coiled coil region	85	183	N/A	INTRINSIC
coiled coil region	206	367	N/A	INTRINSIC
coiled coil region	388	508	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000098538

SMART Domains

Protein: ENSMUSP00000096140
Gene: ENSMUSG00000028256

Domain	Start	End	E-Value	Type
coiled coil region	31	58	N/A	INTRINSIC
low complexity region	77	88	N/A	INTRINSIC
coiled coil region	128	226	N/A	INTRINSIC
coiled coil region	249	604	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000098539

SMART Domains

Protein: ENSMUSP00000096141
Gene: ENSMUSG00000028256

Domain	Start	End	E-Value	Type
coiled coil region	31	58	N/A	INTRINSIC
low complexity region	77	88	N/A	INTRINSIC
coiled coil region	128	226	N/A	INTRINSIC
coiled coil region	249	410	N/A	INTRINSIC
coiled coil region	431	551	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000106192

SMART Domains

Protein: ENSMUSP00000101798
Gene: ENSMUSG00000028256

Domain	Start	End	E-Value	Type
coiled coil region	31	58	N/A	INTRINSIC
low complexity region	77	88	N/A	INTRINSIC
coiled coil region	128	226	N/A	INTRINSIC
coiled coil region	249	410	N/A	INTRINSIC
coiled coil region	431	551	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000195926

Predicted Effect

probably benign
Transcript: ENSMUST00000198764

Predicted Effect

probably benign
Transcript: ENSMUST00000200353

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 98.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Actg1	T	C	11: 120,238,141 (GRCm39)	Y190C	probably damaging	Het
Adgrv1	A	G	13: 81,656,788 (GRCm39)	I2902T	probably damaging	Het
AI429214	G	A	8: 37,460,987 (GRCm39)	G45D	possibly damaging	Het
Ambra1	A	G	2: 91,599,372 (GRCm39)	D164G	probably damaging	Het
Ap3b1	A	T	13: 94,545,299 (GRCm39)	Q184L	probably benign	Het
Arhgef17	T	C	7: 100,580,027 (GRCm39)	D307G	possibly damaging	Het
AY761185	A	T	8: 21,434,571 (GRCm39)	Y52*	probably null	Het
Bfsp1	A	G	2: 143,668,639 (GRCm39)	S647P	probably benign	Het
C130073F10Rik	A	G	4: 101,747,453 (GRCm39)	V192A	probably benign	Het
Cacna1g	T	A	11: 94,350,033 (GRCm39)	D604V	probably benign	Het
Ccdc170	T	C	10: 4,496,854 (GRCm39)	V458A	possibly damaging	Het
Ccdc187	G	A	2: 26,179,746 (GRCm39)	R238W	probably damaging	Het
Cdh1	A	G	8: 107,384,946 (GRCm39)	S380G	probably benign	Het
Cdk5rap3	T	C	11: 96,807,018 (GRCm39)	H4R	probably benign	Het
Cftr	G	A	6: 18,313,729 (GRCm39)		probably null	Het
Cstpp1	A	G	2: 91,252,239 (GRCm39)	Y41H	probably damaging	Het
Dnajc16	A	G	4: 141,504,303 (GRCm39)	V219A	probably benign	Het
Drd3	A	T	16: 43,637,502 (GRCm39)	I266F	probably benign	Het
Dut	A	G	2: 125,099,044 (GRCm39)	D177G	probably benign	Het
Esr1	A	G	10: 4,807,076 (GRCm39)	I331V	probably benign	Het
Gm11110	A	G	17: 57,409,143 (GRCm39)		probably benign	Het
Grm7	G	T	6: 111,335,314 (GRCm39)	G575V	possibly damaging	Het
Heatr3	A	G	8: 88,897,512 (GRCm39)	Y531C	probably damaging	Het
Igfn1	A	G	1: 135,910,218 (GRCm39)	V122A	probably benign	Het
Igsf21	T	C	4: 139,762,054 (GRCm39)	D208G	probably benign	Het
Kntc1	T	C	5: 123,949,373 (GRCm39)	Y1915H	probably damaging	Het
Lamc1	A	T	1: 153,138,238 (GRCm39)	D205E	probably damaging	Het
Limch1	C	T	5: 67,179,269 (GRCm39)	T713I	probably benign	Het
Lrp1b	A	G	2: 41,361,138 (GRCm39)	I555T	probably benign	Het
Lrp2	A	T	2: 69,354,485 (GRCm39)	F448I	probably damaging	Het
Marchf6	T	C	15: 31,459,379 (GRCm39)	K896E	probably benign	Het
Mroh4	T	C	15: 74,485,098 (GRCm39)	Y469C	possibly damaging	Het
Niban3	G	T	8: 72,056,383 (GRCm39)	R361L	probably benign	Het
Nos3	T	C	5: 24,588,333 (GRCm39)	V1060A	possibly damaging	Het
Nr1h4	A	G	10: 89,292,404 (GRCm39)	I406T	probably damaging	Het
Or2y15	A	T	11: 49,351,087 (GRCm39)	T194S	probably damaging	Het
Or5d14	A	G	2: 87,880,608 (GRCm39)	M120T	probably damaging	Het
Pals2	T	G	6: 50,157,257 (GRCm39)		probably null	Het
Pbx2	A	G	17: 34,813,081 (GRCm39)	Y119C	possibly damaging	Het
Pdcd6ip	C	A	9: 113,500,905 (GRCm39)	A526S	probably benign	Het
Prx	G	A	7: 27,219,059 (GRCm39)	D1187N	possibly damaging	Het
Ptpro	G	A	6: 137,357,198 (GRCm39)	V230I	probably benign	Het
Rtn3	C	T	19: 7,434,614 (GRCm39)	M440I	probably benign	Het
Sar1b	T	C	11: 51,679,019 (GRCm39)	I96T	probably damaging	Het
Sds	T	C	5: 120,618,965 (GRCm39)		probably null	Het
Secisbp2	A	G	13: 51,833,977 (GRCm39)	T706A	probably benign	Het
Sorcs3	A	T	19: 48,682,263 (GRCm39)	M433L	possibly damaging	Het
Sppl2a	A	G	2: 126,746,912 (GRCm39)	V472A	probably damaging	Het
Tbc1d9	A	G	8: 83,998,217 (GRCm39)	E1258G	possibly damaging	Het
Tbxas1	C	A	6: 38,929,008 (GRCm39)		probably benign	Het
Tg	T	C	15: 66,568,095 (GRCm39)	I1333T	probably damaging	Het
Tmem108	C	T	9: 103,376,915 (GRCm39)	G178D	probably damaging	Het
Tmem174	A	G	13: 98,773,569 (GRCm39)	L87P	probably damaging	Het
Tmppe	T	A	9: 114,233,769 (GRCm39)	S23T	probably damaging	Het
Ttn	G	A	2: 76,591,447 (GRCm39)	T21074I	probably benign	Het
Tub	A	G	7: 108,628,505 (GRCm39)	M338V	probably null	Het
Vmn1r160	A	T	7: 22,571,531 (GRCm39)	R295*	probably null	Het
Vps52	T	C	17: 34,182,180 (GRCm39)	V518A	probably benign	Het
Wdr59	A	G	8: 112,177,675 (GRCm39)	V909A	probably benign	Het
Wnk1	T	C	6: 119,925,742 (GRCm39)	T1241A	probably benign	Het
Zfp882	G	A	8: 72,668,130 (GRCm39)	C319Y	probably benign	Het
Znfx1	A	T	2: 166,880,860 (GRCm39)	I308N	possibly damaging	Het

Other mutations in Odf2l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00685:Odf2l	APN	3	144,833,634 (GRCm39)	missense	possibly damaging	0.93
IGL00821:Odf2l	APN	3	144,856,748 (GRCm39)	missense	probably damaging	1.00
IGL01984:Odf2l	APN	3	144,845,590 (GRCm39)	nonsense	probably null
R0080:Odf2l	UTSW	3	144,830,084 (GRCm39)	missense	possibly damaging	0.63
R0133:Odf2l	UTSW	3	144,854,302 (GRCm39)	missense	probably damaging	0.96
R0436:Odf2l	UTSW	3	144,831,877 (GRCm39)	missense	possibly damaging	0.91
R1218:Odf2l	UTSW	3	144,854,693 (GRCm39)	missense	probably damaging	1.00
R1521:Odf2l	UTSW	3	144,854,797 (GRCm39)	missense	possibly damaging	0.93
R1677:Odf2l	UTSW	3	144,845,543 (GRCm39)	critical splice acceptor site	probably null
R1884:Odf2l	UTSW	3	144,856,809 (GRCm39)	missense	probably damaging	1.00
R2151:Odf2l	UTSW	3	144,854,785 (GRCm39)	missense	possibly damaging	0.86
R2910:Odf2l	UTSW	3	144,830,084 (GRCm39)	missense	probably benign	0.00
R2911:Odf2l	UTSW	3	144,830,084 (GRCm39)	missense	probably benign	0.00
R4552:Odf2l	UTSW	3	144,856,844 (GRCm39)	missense	probably benign	0.02
R4640:Odf2l	UTSW	3	144,834,706 (GRCm39)	missense	probably damaging	1.00
R4667:Odf2l	UTSW	3	144,833,801 (GRCm39)	missense	probably benign	0.04
R5472:Odf2l	UTSW	3	144,852,627 (GRCm39)	missense	probably benign	0.00
R5769:Odf2l	UTSW	3	144,841,492 (GRCm39)	missense	possibly damaging	0.91
R5877:Odf2l	UTSW	3	144,834,771 (GRCm39)	splice site	probably null
R6026:Odf2l	UTSW	3	144,854,797 (GRCm39)	missense	possibly damaging	0.93
R6031:Odf2l	UTSW	3	144,845,624 (GRCm39)	missense	probably damaging	1.00
R6031:Odf2l	UTSW	3	144,845,624 (GRCm39)	missense	probably damaging	1.00
R6351:Odf2l	UTSW	3	144,841,479 (GRCm39)	missense	probably benign	0.11
R6454:Odf2l	UTSW	3	144,859,181 (GRCm39)	missense	possibly damaging	0.93
R6462:Odf2l	UTSW	3	144,852,672 (GRCm39)	missense	probably damaging	1.00
R7008:Odf2l	UTSW	3	144,838,495 (GRCm39)	missense	probably damaging	1.00
R7121:Odf2l	UTSW	3	144,845,581 (GRCm39)	missense	possibly damaging	0.93
R7151:Odf2l	UTSW	3	144,832,827 (GRCm39)	missense	probably benign	0.26
R7542:Odf2l	UTSW	3	144,859,197 (GRCm39)	missense	probably damaging	0.99
R7664:Odf2l	UTSW	3	144,854,345 (GRCm39)	missense	probably benign	0.41
R7811:Odf2l	UTSW	3	144,859,148 (GRCm39)	missense	probably benign	0.00
R7816:Odf2l	UTSW	3	144,856,776 (GRCm39)	missense	probably damaging	1.00
R7913:Odf2l	UTSW	3	144,859,244 (GRCm39)	nonsense	probably null
R8090:Odf2l	UTSW	3	144,832,796 (GRCm39)	missense	probably damaging	0.96
R8205:Odf2l	UTSW	3	144,856,495 (GRCm39)	critical splice acceptor site	probably benign
R8222:Odf2l	UTSW	3	144,833,799 (GRCm39)	missense	probably damaging	1.00
R8829:Odf2l	UTSW	3	144,833,820 (GRCm39)	missense	probably benign	0.02
R8832:Odf2l	UTSW	3	144,833,820 (GRCm39)	missense	probably benign	0.02
R8862:Odf2l	UTSW	3	144,833,758 (GRCm39)	unclassified	probably benign
R9136:Odf2l	UTSW	3	144,851,698 (GRCm39)	missense
R9778:Odf2l	UTSW	3	144,854,789 (GRCm39)	missense	possibly damaging	0.60

Predicted Primers

PCR Primer
(F):5'- ATTGTAAACATGGCTTGGTGTC -3'
(R):5'- TCGGCCAGCTTCTTCTCAAG -3'

Sequencing Primer
(F):5'- AAACATGGCTTGGTGTCTTTCTG -3'
(R):5'- TGTACACACATATACACGTACATGC -3'

Posted On

2018-10-18