Incidental Mutation 'R6837:Fas'
| ID |
537924 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Fas
|
| Ensembl Gene |
ENSMUSG00000024778 |
| Gene Name |
Fas cell surface death receptor |
| Synonyms |
APO-1, Tnfrsf6, TNFR6, CD95 |
| MMRRC Submission |
044945-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.134)
|
| Stock # |
R6837 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
19 |
| Chromosomal Location |
34268066-34305172 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 34284564 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Serine
at position 24
(T24S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000025691
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000025691]
[ENSMUST00000112472]
|
| AlphaFold |
P25446 |
| PDB Structure |
Structure of the FAS/FADD death domain assembly [X-RAY DIFFRACTION]
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000025691
AA Change: T24S
PolyPhen 2
Score 0.970 (Sensitivity: 0.77; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000025691
Gene: ENSMUSG00000024778
AA Change: T24S
| Domain | Start | End | E-Value | Type |
|---|
|
TNFR
|
44 |
78 |
2.43e0 |
SMART |
|
TNFR
|
81 |
123 |
3.21e-8 |
SMART |
|
TNFR
|
125 |
161 |
9.45e-6 |
SMART |
|
transmembrane domain
|
170 |
187 |
N/A |
INTRINSIC |
|
DEATH
|
212 |
306 |
2.82e-22 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000112472
AA Change: T24S
PolyPhen 2
Score 0.127 (Sensitivity: 0.93; Specificity: 0.86)
|
| SMART Domains |
Protein: ENSMUSP00000108091
Gene: ENSMUSG00000024778
AA Change: T24S
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:TNFR
|
44 |
61 |
5e-6 |
BLAST |
|
SCOP:d1jmab1
|
44 |
61 |
1e-3 |
SMART |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.6%
- 20x: 98.9%
|
| Validation Efficiency |
98% (41/42) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the TNF-receptor superfamily. This receptor contains a death domain. It has been shown to play a central role in the physiological regulation of programmed cell death, and has been implicated in the pathogenesis of various malignancies and diseases of the immune system. The interaction of this receptor with its ligand allows the formation of a death-inducing signaling complex that includes Fas-associated death domain protein (FADD), caspase 8, and caspase 10. The autoproteolytic processing of the caspases in the complex triggers a downstream caspase cascade, and leads to apoptosis. This receptor has been also shown to activate NF-kappaB, MAPK3/ERK1, and MAPK8/JNK, and is found to be involved in transducing the proliferating signals in normal diploid fibroblast and T cells. Several alternatively spliced transcript variants have been described, some of which are candidates for nonsense-mediated mRNA decay (NMD). The isoforms lacking the transmembrane domain may negatively regulate the apoptosis mediated by the full length isoform. [provided by RefSeq, Mar 2011]
PHENOTYPE: Mutations in this locus affect immune function and homozygotes show varying severity of lymphadenopathy, splenomegaly, lymphocytic infiltrations, elevated immunoglobulin levels, autoantibodies, impaired clonal deletion of T cells, and lupus-like disease. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 41 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Akap6 |
G |
A |
12: 53,188,045 (GRCm39) |
E1820K |
probably damaging |
Het |
| Anxa8 |
A |
T |
14: 33,814,511 (GRCm39) |
I116F |
probably damaging |
Het |
| Arid4a |
A |
G |
12: 71,122,289 (GRCm39) |
D890G |
probably benign |
Het |
| Aup1 |
C |
T |
6: 83,034,279 (GRCm39) |
T396I |
possibly damaging |
Het |
| C2cd3 |
G |
C |
7: 100,097,953 (GRCm39) |
E594Q |
probably damaging |
Het |
| Colgalt2 |
C |
T |
1: 152,382,579 (GRCm39) |
P477L |
probably damaging |
Het |
| Dennd3 |
G |
A |
15: 73,429,542 (GRCm39) |
D20N |
probably damaging |
Het |
| Dpysl3 |
A |
G |
18: 43,570,947 (GRCm39) |
I109T |
probably benign |
Het |
| Fras1 |
A |
T |
5: 96,874,832 (GRCm39) |
I2332F |
probably damaging |
Het |
| Gm10267 |
T |
C |
18: 44,291,375 (GRCm39) |
H32R |
probably benign |
Het |
| Gm57859 |
A |
G |
11: 113,579,439 (GRCm39) |
H278R |
possibly damaging |
Het |
| Hcfc2 |
A |
T |
10: 82,575,030 (GRCm39) |
I230F |
probably damaging |
Het |
| Hdac9 |
T |
C |
12: 34,337,463 (GRCm39) |
T673A |
probably benign |
Het |
| Herc2 |
T |
G |
7: 55,839,589 (GRCm39) |
N3366K |
possibly damaging |
Het |
| Hhla1 |
T |
C |
15: 65,820,334 (GRCm39) |
N139D |
probably damaging |
Het |
| Hip1r |
A |
G |
5: 124,136,928 (GRCm39) |
E632G |
possibly damaging |
Het |
| Kcnc2 |
A |
G |
10: 112,294,407 (GRCm39) |
D98G |
probably damaging |
Het |
| Maip1 |
T |
A |
1: 57,454,891 (GRCm39) |
*292K |
probably null |
Het |
| Map2 |
T |
C |
1: 66,453,731 (GRCm39) |
F874L |
probably damaging |
Het |
| Myof |
A |
T |
19: 37,911,404 (GRCm39) |
|
probably null |
Het |
| Notch2 |
A |
G |
3: 97,978,170 (GRCm39) |
|
probably null |
Het |
| Npy5r |
T |
A |
8: 67,134,392 (GRCm39) |
M134L |
probably benign |
Het |
| Ntsr2 |
T |
A |
12: 16,709,710 (GRCm39) |
M225K |
probably benign |
Het |
| Nup153 |
G |
A |
13: 46,847,527 (GRCm39) |
T634I |
probably damaging |
Het |
| Or51f1d |
T |
A |
7: 102,700,929 (GRCm39) |
Y141* |
probably null |
Het |
| Pcsk5 |
T |
C |
19: 17,416,448 (GRCm39) |
S1667G |
probably benign |
Het |
| Pex13 |
A |
G |
11: 23,599,527 (GRCm39) |
I328T |
possibly damaging |
Het |
| Pkd2 |
T |
G |
5: 104,624,909 (GRCm39) |
L235W |
probably damaging |
Het |
| Prune2 |
A |
T |
19: 17,156,292 (GRCm39) |
D66V |
probably damaging |
Het |
| Rasal3 |
T |
C |
17: 32,622,044 (GRCm39) |
N105S |
probably benign |
Het |
| Sla |
A |
T |
15: 66,658,939 (GRCm39) |
I144N |
probably damaging |
Het |
| Slc5a4b |
A |
T |
10: 75,898,220 (GRCm39) |
I498N |
possibly damaging |
Het |
| Snx14 |
C |
T |
9: 88,262,276 (GRCm39) |
E872K |
probably benign |
Het |
| Stx16 |
G |
A |
2: 173,935,795 (GRCm39) |
R242H |
probably benign |
Het |
| Tg |
T |
C |
15: 66,567,984 (GRCm39) |
F1296S |
probably damaging |
Het |
| Tmem161b |
C |
A |
13: 84,370,537 (GRCm39) |
|
probably benign |
Het |
| Tmf1 |
G |
A |
6: 97,153,542 (GRCm39) |
T177M |
possibly damaging |
Het |
| Tuba4a |
T |
C |
1: 75,194,038 (GRCm39) |
Q14R |
probably damaging |
Het |
| Vmn2r114 |
T |
C |
17: 23,529,176 (GRCm39) |
M309V |
probably benign |
Het |
| Vps13c |
C |
T |
9: 67,817,504 (GRCm39) |
P1059S |
probably benign |
Het |
| Yars1 |
T |
A |
4: 129,103,544 (GRCm39) |
S298T |
possibly damaging |
Het |
|
| Other mutations in Fas |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00571:Fas
|
APN |
19 |
34,296,018 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01677:Fas
|
APN |
19 |
34,296,218 (GRCm39) |
missense |
probably benign |
0.09 |
|
IGL01834:Fas
|
APN |
19 |
34,296,003 (GRCm39) |
missense |
probably benign |
0.33 |
|
IGL02130:Fas
|
APN |
19 |
34,292,695 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02424:Fas
|
APN |
19 |
34,304,434 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02532:Fas
|
APN |
19 |
34,293,999 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02569:Fas
|
APN |
19 |
34,297,962 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
amarena
|
UTSW |
19 |
34,296,049 (GRCm39) |
missense |
probably benign |
0.01 |
|
bing
|
UTSW |
19 |
34,293,969 (GRCm39) |
missense |
probably damaging |
1.00 |
|
cherry
|
UTSW |
19 |
34,304,540 (GRCm39) |
missense |
probably damaging |
0.99 |
|
P0021:Fas
|
UTSW |
19 |
34,284,610 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R0525:Fas
|
UTSW |
19 |
34,296,727 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0588:Fas
|
UTSW |
19 |
34,304,540 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1465:Fas
|
UTSW |
19 |
34,294,013 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1465:Fas
|
UTSW |
19 |
34,294,013 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2077:Fas
|
UTSW |
19 |
34,297,953 (GRCm39) |
splice site |
probably benign |
|
|
R2283:Fas
|
UTSW |
19 |
34,284,649 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4154:Fas
|
UTSW |
19 |
34,296,228 (GRCm39) |
missense |
possibly damaging |
0.72 |
|
R5252:Fas
|
UTSW |
19 |
34,294,043 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5943:Fas
|
UTSW |
19 |
34,297,987 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6474:Fas
|
UTSW |
19 |
34,293,969 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7640:Fas
|
UTSW |
19 |
34,284,564 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R8507:Fas
|
UTSW |
19 |
34,304,626 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8837:Fas
|
UTSW |
19 |
34,296,049 (GRCm39) |
missense |
probably benign |
0.01 |
|
| Predicted Primers |
PCR Primer
(F):5'- CAAGCCACAGGGTACTCATC -3'
(R):5'- AGCTGCATAATGGTCCAACAC -3'
Sequencing Primer
(F):5'- AGGGTACTCATCTCCTGGCAAC -3'
(R):5'- GCATAATGGTCCAACACATTCTTC -3'
|
| Posted On |
2018-10-18 |
Incidental Mutation