Mutagenetix > Incidental Mutation

Incidental Mutation 'R6916:Or10d1c'

539354

Institutional Source

Beutler Lab

Gene Symbol

Or10d1c

Ensembl Gene

ENSMUSG00000057424

Gene Name

olfactory receptor family 10 subfamily D member 1C

Synonyms

GA_x6K02T2PVTD-32678895-32677963, Olfr934, MOR224-6

MMRRC Submission

045037-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.078) question?

Stock #

R6916 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

38893406-38894338 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 38894200 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 47 (I47V)

Ref Sequence

ENSEMBL: ENSMUSP00000150864 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074211] [ENSMUST00000214324] [ENSMUST00000216238] [ENSMUST00000216823]

AlphaFold

Q9EQ87

Predicted Effect

probably benign
Transcript: ENSMUST00000074211
AA Change: I47V

PolyPhen 2 Score 0.138 (Sensitivity: 0.92; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000073835
Gene: ENSMUSG00000057424
AA Change: I47V

Domain	Start	End	E-Value	Type
Pfam:7tm_4	29	304	1.7e-48	PFAM
Pfam:7TM_GPCR_Srsx	33	222	7.2e-9	PFAM
Pfam:7tm_1	39	286	5.4e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000214324
AA Change: I47V

PolyPhen 2 Score 0.138 (Sensitivity: 0.92; Specificity: 0.86)

Predicted Effect

probably benign
Transcript: ENSMUST00000216238

Predicted Effect

probably benign
Transcript: ENSMUST00000216823
AA Change: I47V

PolyPhen 2 Score 0.138 (Sensitivity: 0.92; Specificity: 0.86)

Meta Mutation Damage Score

0.0846

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 98.0%

Validation Efficiency

98% (59/60)

MGI Phenotype

FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700049A03Rik	T	A	12: 71,211,318 (GRCm39)	I684K	possibly damaging	Het
Abcg3	T	A	5: 105,122,601 (GRCm39)	R97S	probably benign	Het
Acin1	A	T	14: 54,902,873 (GRCm39)	F160L	probably benign	Het
Aoc1l2	T	A	6: 48,907,987 (GRCm39)	I329N	probably benign	Het
Asb10	T	C	5: 24,742,854 (GRCm39)	D293G	probably damaging	Het
Atp6v1c1	T	C	15: 38,677,825 (GRCm39)	S117P	probably benign	Het
Bahcc1	T	A	11: 120,163,835 (GRCm39)	V711E	probably damaging	Het
Baz2b	A	T	2: 59,799,120 (GRCm39)	S335T	probably benign	Het
Bdkrb2	C	T	12: 105,558,038 (GRCm39)	A93V	probably damaging	Het
Cacna1d	A	T	14: 29,817,321 (GRCm39)	V1247D	probably damaging	Het
Cenpb	A	C	2: 131,021,544 (GRCm39)	F85V	probably benign	Het
Cep112	C	A	11: 108,750,202 (GRCm39)	Q142K	probably damaging	Het
Ciita	T	A	16: 10,327,071 (GRCm39)		probably null	Het
Cnr1	A	G	4: 33,943,897 (GRCm39)	D95G	probably benign	Het
Ctnnd1	A	T	2: 84,439,990 (GRCm39)	D767E	probably benign	Het
Ddx20	T	C	3: 105,587,929 (GRCm39)	N384D	probably damaging	Het
Dnaaf3	T	A	7: 4,530,532 (GRCm39)	D191V	probably damaging	Het
Efna1	T	C	3: 89,183,695 (GRCm39)	N44D	possibly damaging	Het
Errfi1	A	T	4: 150,951,930 (GRCm39)	K453*	probably null	Het
Fam149a	C	A	8: 45,803,443 (GRCm39)	K349N	probably damaging	Het
Fbxl20	T	A	11: 98,004,079 (GRCm39)	I70L	possibly damaging	Het
Flnb	C	T	14: 7,907,171 (GRCm38)	T1248I	probably damaging	Het
Frem2	T	C	3: 53,455,109 (GRCm39)	R2156G	probably damaging	Het
Ftl1	T	C	7: 45,108,964 (GRCm39)	Y31C	probably damaging	Het
Gm5862	G	T	5: 26,224,346 (GRCm39)	H208N	probably benign	Het
Hc	A	T	2: 34,900,044 (GRCm39)	Y1096*	probably null	Het
Hps1	ATCCTCCTCCTCCTCCTCCTCCTC	ATCCTCCTCCTCCTCCTCCTC	19: 42,755,164 (GRCm39)			Het
Ints3	T	C	3: 90,313,641 (GRCm39)	D329G	probably damaging	Het
Irak3	A	T	10: 120,037,270 (GRCm39)	L32Q	probably damaging	Het
Kifbp	T	C	10: 62,401,843 (GRCm39)	T20A	probably benign	Het
Klrb1f	A	T	6: 129,030,774 (GRCm39)	D95V	probably benign	Het
Krt79	C	T	15: 101,844,605 (GRCm39)	D260N	probably benign	Het
Lrp11	C	A	10: 7,484,478 (GRCm39)		probably null	Het
Lrrc10	C	A	10: 116,881,454 (GRCm39)	R43S	possibly damaging	Het
Muc5b	A	T	7: 141,418,454 (GRCm39)	Y3800F	possibly damaging	Het
Myh14	T	C	7: 44,278,737 (GRCm39)	K1003E	probably damaging	Het
Nbeal2	A	G	9: 110,455,176 (GRCm39)	I2567T	probably damaging	Het
Necab2	G	T	8: 120,194,355 (GRCm39)	R277L	probably damaging	Het
Nell1	T	C	7: 50,350,927 (GRCm39)	Y525H	probably benign	Het
Olfm4	T	A	14: 80,251,638 (GRCm39)	M186K	probably damaging	Het
Or1e29	T	A	11: 73,667,895 (GRCm39)	Q86L	probably benign	Het
Or2h2b-ps1	T	C	17: 37,480,864 (GRCm39)	K225R	probably benign	Het
Pcdhb11	A	T	18: 37,555,434 (GRCm39)	S255C	possibly damaging	Het
Rrbp1	A	T	2: 143,816,518 (GRCm39)	C704S	probably benign	Het
Rsrc1	C	T	3: 66,901,982 (GRCm39)	P44L	unknown	Het
Sh2d3c	C	T	2: 32,642,665 (GRCm39)	R552*	probably null	Het
Sh3d19	A	G	3: 85,992,218 (GRCm39)	E82G	probably benign	Het
Son	T	A	16: 91,451,673 (GRCm39)	L140Q	probably damaging	Het
Svil	G	A	18: 5,114,682 (GRCm39)		probably benign	Het
Syne1	T	C	10: 5,177,912 (GRCm39)	K4854R	probably benign	Het
Tlcd4	T	C	3: 121,000,805 (GRCm39)	D276G	possibly damaging	Het
Tmem202	C	A	9: 59,432,757 (GRCm39)		probably benign	Het
Trak2	T	C	1: 58,949,184 (GRCm39)	T539A	probably benign	Het
Trdn	T	C	10: 33,033,014 (GRCm39)	S80P	probably damaging	Het
Ugt2b37	T	A	5: 87,402,459 (GRCm39)	R57S	probably benign	Het
Usp34	G	A	11: 23,408,023 (GRCm39)	R2616Q	probably damaging	Het
Usp48	T	C	4: 137,365,544 (GRCm39)	Y113H	probably damaging	Het
Vtcn1	G	T	3: 100,795,479 (GRCm39)		probably null	Het
Wdr19	G	A	5: 65,382,677 (GRCm39)	R467Q	possibly damaging	Het
Wdr72	A	G	9: 74,062,321 (GRCm39)	Y489C	probably benign	Het
Wipf1	C	A	2: 73,267,748 (GRCm39)	G217W	probably damaging	Het

Other mutations in Or10d1c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02156:Or10d1c	APN	9	38,893,842 (GRCm39)	missense	possibly damaging	0.71
R1061:Or10d1c	UTSW	9	38,893,779 (GRCm39)	missense	probably damaging	1.00
R1604:Or10d1c	UTSW	9	38,893,914 (GRCm39)	missense	probably benign	0.01
R1776:Or10d1c	UTSW	9	38,894,190 (GRCm39)	missense	probably damaging	1.00
R3499:Or10d1c	UTSW	9	38,893,761 (GRCm39)	missense	probably damaging	1.00
R3761:Or10d1c	UTSW	9	38,893,662 (GRCm39)	missense	possibly damaging	0.94
R3876:Or10d1c	UTSW	9	38,894,166 (GRCm39)	missense	probably damaging	1.00
R4191:Or10d1c	UTSW	9	38,894,313 (GRCm39)	missense	probably benign	0.01
R4192:Or10d1c	UTSW	9	38,894,313 (GRCm39)	missense	probably benign	0.01
R4333:Or10d1c	UTSW	9	38,893,884 (GRCm39)	missense	possibly damaging	0.85
R4876:Or10d1c	UTSW	9	38,893,922 (GRCm39)	nonsense	probably null
R5539:Or10d1c	UTSW	9	38,893,573 (GRCm39)	missense	possibly damaging	0.85
R7097:Or10d1c	UTSW	9	38,893,914 (GRCm39)	missense	probably benign	0.01
R7338:Or10d1c	UTSW	9	38,893,816 (GRCm39)	missense	probably damaging	0.99
R8116:Or10d1c	UTSW	9	38,894,169 (GRCm39)	missense	probably damaging	1.00
R9350:Or10d1c	UTSW	9	38,894,081 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- TATGGCAATAAAGCGGTCATAAGC -3'
(R):5'- ATTGGGCTTCATTGTCCATGTC -3'

Sequencing Primer
(F):5'- CGGTCATAAGCCATCACTGTG -3'
(R):5'- CTTGAAGCTATGCGGAATTTCTCAG -3'

Posted On

2018-11-06