Mutagenetix > Incidental Mutation

Incidental Mutation 'R6917:Thumpd2'

539421

Institutional Source

Beutler Lab

Gene Symbol

Thumpd2

Ensembl Gene

ENSMUSG00000024246

Gene Name

THUMP domain containing 2

Synonyms

2810025A12Rik

MMRRC Submission

045038-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.060) question?

Stock #

R6917 (G1)

Quality Score

211.009

Status

Validated

Chromosome

Chromosomal Location

81333761-81372511 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 81351543 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Leucine at position 293 (I293L)

Ref Sequence

ENSEMBL: ENSMUSP00000025093 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025093]

AlphaFold

Q9CZB3

Predicted Effect

probably benign
Transcript: ENSMUST00000025093
AA Change: I293L

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000025093
Gene: ENSMUSG00000024246
AA Change: I293L

Domain	Start	End	E-Value	Type
THUMP	175	266	4.08e-2	SMART
Pfam:UPF0020	272	425	3e-27	PFAM
Pfam:CMAS	284	429	3e-7	PFAM
Pfam:Ubie_methyltran	285	417	3e-10	PFAM
Pfam:MTS	289	417	2.1e-7	PFAM
Pfam:Methyltransf_31	296	441	7.8e-14	PFAM
Pfam:Methyltransf_11	303	406	1.9e-10	PFAM

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.6%
20x: 95.6%

Validation Efficiency

96% (45/47)

Allele List at MGI

Other mutations in this stock

Total: 45 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abi3bp	A	G	16: 56,437,684 (GRCm39)		probably null	Het
Adcy2	A	T	13: 68,768,876 (GRCm39)	M1084K	possibly damaging	Het
Ak1	A	G	2: 32,521,164 (GRCm39)	Y95C	possibly damaging	Het
Akap6	A	G	12: 53,115,951 (GRCm39)	E1018G	probably null	Het
Ccdc175	A	G	12: 72,231,679 (GRCm39)	S27P	probably damaging	Het
Ddx31	C	T	2: 28,782,421 (GRCm39)	T588I	probably damaging	Het
Dmxl1	T	C	18: 49,997,215 (GRCm39)	W504R	probably damaging	Het
Echs1	T	G	7: 139,689,924 (GRCm39)	M239L	probably benign	Het
Eno1b	A	G	18: 48,180,656 (GRCm39)	D278G	probably benign	Het
Eno3	A	G	11: 70,552,262 (GRCm39)	T305A	probably benign	Het
Gm5591	T	A	7: 38,221,614 (GRCm39)	S152C	probably damaging	Het
Gngt1	A	G	6: 3,996,680 (GRCm39)	D42G	probably benign	Het
Gpatch2l	G	A	12: 86,290,958 (GRCm39)	R47H	probably damaging	Het
H2-Aa	T	C	17: 34,502,681 (GRCm39)	T79A	probably damaging	Het
Ice1	A	T	13: 70,743,013 (GRCm39)	Y2116N	probably damaging	Het
Kdm6b	A	G	11: 69,297,419 (GRCm39)	M311T	probably benign	Het
L1td1	T	C	4: 98,622,268 (GRCm39)	F277L	probably benign	Het
Lamp1	T	C	8: 13,222,563 (GRCm39)	I249T	probably damaging	Het
Ldb3	G	A	14: 34,277,321 (GRCm39)	A351V	probably null	Het
Lmo7	A	G	14: 102,155,446 (GRCm39)	E996G	probably damaging	Het
Lsr	T	C	7: 30,657,721 (GRCm39)	D413G	possibly damaging	Het
Magel2	CCCTCCTCCTCCTCCTCCTCCT	CCCTCCTCCTCCTCCTCCT	7: 62,027,592 (GRCm39)		probably benign	Het
Myo7a	T	C	7: 97,744,970 (GRCm39)	E290G	possibly damaging	Het
Nos2	C	T	11: 78,842,053 (GRCm39)	T735M	possibly damaging	Het
Or10ak12	A	T	4: 118,666,326 (GRCm39)	L245H	probably damaging	Het
Or11h6	A	G	14: 50,880,680 (GRCm39)	K314R	possibly damaging	Het
Or8g36	T	A	9: 39,422,495 (GRCm39)	I174L	probably damaging	Het
Pik3c2g	T	C	6: 139,841,899 (GRCm39)	L768P	probably benign	Het
Plod2	T	A	9: 92,475,823 (GRCm39)	V302D	possibly damaging	Het
Ptgdr	A	T	14: 45,096,067 (GRCm39)	V215E	possibly damaging	Het
Rad51d	C	T	11: 82,770,159 (GRCm39)	R199Q	probably damaging	Het
Rsrc1	C	T	3: 66,901,982 (GRCm39)	P44L	unknown	Het
Rtel1	ATT	ATTTT	2: 180,980,070 (GRCm39)		probably null	Het
Sgip1	A	G	4: 102,825,388 (GRCm39)	R772G	probably damaging	Het
Slc19a2	C	A	1: 164,088,578 (GRCm39)	T141N	probably damaging	Het
Sp4	G	T	12: 118,262,908 (GRCm39)	N379K	probably damaging	Het
Thrap3	A	G	4: 126,074,285 (GRCm39)		probably benign	Het
Tjp1	A	G	7: 64,949,436 (GRCm39)	S1649P	probably damaging	Het
Tssk4	A	G	14: 55,889,864 (GRCm39)	S326G	probably benign	Het
Txndc9	A	C	1: 38,034,887 (GRCm39)	S6A	probably benign	Het
Uhrf1	T	C	17: 56,616,574 (GRCm39)	Y131H	probably damaging	Het
Vnn3	A	G	10: 23,741,832 (GRCm39)	D379G	possibly damaging	Het
Vsig2	T	A	9: 37,452,745 (GRCm39)	S105T	probably benign	Het
Zfp445	A	T	9: 122,691,359 (GRCm39)		probably null	Het
Zfp654	A	T	16: 64,606,834 (GRCm39)	M456K	probably damaging	Het

Other mutations in Thumpd2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01750:Thumpd2	APN	17	81,361,815 (GRCm39)	missense	probably benign	0.00
IGL02409:Thumpd2	APN	17	81,340,117 (GRCm39)	missense	probably damaging	1.00
IGL02546:Thumpd2	APN	17	81,361,884 (GRCm39)	missense	probably benign	0.16
IGL03357:Thumpd2	APN	17	81,351,519 (GRCm39)	splice site	probably benign
R1295:Thumpd2	UTSW	17	81,363,317 (GRCm39)	missense	probably damaging	1.00
R2030:Thumpd2	UTSW	17	81,372,387 (GRCm39)	missense	probably damaging	1.00
R2898:Thumpd2	UTSW	17	81,351,557 (GRCm39)	nonsense	probably null
R4805:Thumpd2	UTSW	17	81,334,130 (GRCm39)	missense	probably damaging	0.98
R4861:Thumpd2	UTSW	17	81,334,230 (GRCm39)	missense	probably benign	0.03
R4861:Thumpd2	UTSW	17	81,334,230 (GRCm39)	missense	probably benign	0.03
R5328:Thumpd2	UTSW	17	81,351,591 (GRCm39)	missense	possibly damaging	0.64
R5359:Thumpd2	UTSW	17	81,334,206 (GRCm39)	missense	probably benign	0.16
R6207:Thumpd2	UTSW	17	81,363,266 (GRCm39)	missense	probably damaging	1.00
R6218:Thumpd2	UTSW	17	81,360,342 (GRCm39)	missense	probably damaging	1.00
R6484:Thumpd2	UTSW	17	81,361,617 (GRCm39)	missense	probably benign	0.01
R6853:Thumpd2	UTSW	17	81,372,459 (GRCm39)	missense	possibly damaging	0.75
R6855:Thumpd2	UTSW	17	81,351,599 (GRCm39)	missense	probably damaging	1.00
R7018:Thumpd2	UTSW	17	81,363,326 (GRCm39)	nonsense	probably null
R7916:Thumpd2	UTSW	17	81,334,116 (GRCm39)	missense	probably benign	0.05
R7957:Thumpd2	UTSW	17	81,334,157 (GRCm39)	missense	probably benign	0.23
R8422:Thumpd2	UTSW	17	81,334,373 (GRCm39)	missense	probably damaging	1.00
R9248:Thumpd2	UTSW	17	81,334,040 (GRCm39)	missense	possibly damaging	0.83
R9727:Thumpd2	UTSW	17	81,345,585 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCTTACAGAGAAGTTCAATGCAG -3'
(R):5'- TGCTAAGTAAGAGGTTTCCTTCATG -3'

Sequencing Primer
(F):5'- TACAGAGAAGTTCAATGCAGAAAAAC -3'
(R):5'- GGCCAGCAGAACTTACAT -3'

Posted On

2018-11-06