Mutagenetix > Incidental Mutation

Incidental Mutation 'R6943:Taf10'

540655

Institutional Source

Beutler Lab

Gene Symbol

Taf10

Ensembl Gene

ENSMUSG00000043866

Gene Name

TATA-box binding protein associated factor 10

Synonyms

Taf2h, TAFII30, 30kDa

MMRRC Submission

045057-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R6943 (G1)

Quality Score

148.008

Status

Not validated

Chromosome

Chromosomal Location

105392101-105393550 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 105393383 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 48 (T48I)

Ref Sequence

ENSEMBL: ENSMUSP00000118105 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033182] [ENSMUST00000033184] [ENSMUST00000136687] [ENSMUST00000141116] [ENSMUST00000149695] [ENSMUST00000163389]

AlphaFold

Q8K0H5

Predicted Effect

probably benign
Transcript: ENSMUST00000033182

SMART Domains

Protein: ENSMUSP00000033182
Gene: ENSMUSG00000030890

Domain	Start	End	E-Value	Type
ANK	33	62	4.71e-6	SMART
ANK	66	95	1.04e-7	SMART
ANK	99	128	1.02e-1	SMART
Pfam:Pkinase	193	445	1.5e-25	PFAM
Pfam:Pkinase_Tyr	193	446	7.2e-40	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000033184

SMART Domains

Protein: ENSMUSP00000033184
Gene: ENSMUSG00000030894

Domain	Start	End	E-Value	Type
low complexity region	2	17	N/A	INTRINSIC
Pro-kuma_activ	32	176	4.53e-50	SMART
low complexity region	177	189	N/A	INTRINSIC
Pfam:Peptidase_S8	251	492	1.1e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000127298

Predicted Effect

probably benign
Transcript: ENSMUST00000130565

Predicted Effect

probably benign
Transcript: ENSMUST00000136687

SMART Domains

Protein: ENSMUSP00000123443
Gene: ENSMUSG00000030890

Domain	Start	End	E-Value	Type
ANK	33	62	4.71e-6	SMART
ANK	66	95	1.04e-7	SMART
ANK	99	128	1.02e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000141116
AA Change: T48I

PolyPhen 2 Score 0.226 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000118105
Gene: ENSMUSG00000043866
AA Change: T48I

Domain	Start	End	E-Value	Type
low complexity region	17	39	N/A	INTRINSIC
low complexity region	45	91	N/A	INTRINSIC
Pfam:TFIID_30kDa	128	177	6.1e-30	PFAM
low complexity region	181	192	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000149695

Predicted Effect

probably benign
Transcript: ENSMUST00000153557

Predicted Effect

probably benign
Transcript: ENSMUST00000163389

SMART Domains

Protein: ENSMUSP00000130341
Gene: ENSMUSG00000030890

Domain	Start	End	E-Value	Type
ANK	33	62	4.71e-6	SMART
ANK	66	95	1.04e-7	SMART
ANK	99	128	1.02e-1	SMART
Pfam:Pkinase_Tyr	193	446	4e-39	PFAM
Pfam:Pkinase	195	445	3e-23	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.8%
10x: 98.9%
20x: 96.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the small subunits of TFIID that is associated with a subset of TFIID complexes. Studies with human and mammalian cells have shown that this subunit is required for transcriptional activation by the estrogen receptor, for progression through the cell cycle, and may also be required for certain cellular differentiation programs. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice die shortly after implantation. Embryos are developmentally retarded and disorganized, the inner cell mass is small and trophoblasts stop endocycling. Ablation in keratinocytes during fetal development, but not in adult keratinocytes, results in impaired skin barrier function. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aacs	T	A	5: 125,583,362 (GRCm39)		probably null	Het
Arhgef1	A	G	7: 24,623,156 (GRCm39)	I423V	probably benign	Het
Aspm	T	C	1: 139,408,280 (GRCm39)	L2389P	probably damaging	Het
B4galt1	T	C	4: 40,812,860 (GRCm39)	M222V	probably benign	Het
Bsn	C	A	9: 107,985,016 (GRCm39)	G3013C	unknown	Het
Camsap2	T	C	1: 136,232,187 (GRCm39)	H136R	probably damaging	Het
Ccar1	A	G	10: 62,582,715 (GRCm39)	V1047A	unknown	Het
Ccdc80	A	G	16: 44,915,445 (GRCm39)	E67G	probably benign	Het
Ces3b	G	T	8: 105,819,710 (GRCm39)	G511V	probably damaging	Het
Cops6	T	A	5: 138,161,790 (GRCm39)	H224Q	probably benign	Het
Dnah5	A	T	15: 28,235,866 (GRCm39)	D331V	probably damaging	Het
Dusp29	T	C	14: 21,727,135 (GRCm39)	D171G	probably damaging	Het
Echs1	G	A	7: 139,688,007 (GRCm39)	T266I	probably damaging	Het
Ehmt2	G	A	17: 35,130,406 (GRCm39)	C1017Y	probably damaging	Het
Epb41l5	C	T	1: 119,536,859 (GRCm39)	R344Q	probably damaging	Het
Fcgbp	G	A	7: 27,791,477 (GRCm39)	V913I	probably benign	Het
Foxd4	A	G	19: 24,877,240 (GRCm39)	F320S	probably damaging	Het
Frmpd4	C	T	X: 166,387,579 (GRCm39)	R133K	probably damaging	Het
Glmp	A	G	3: 88,233,917 (GRCm39)	Y258C	probably damaging	Het
Gphn	C	G	12: 78,538,955 (GRCm39)	S200R	possibly damaging	Het
Gvin2	G	A	7: 105,551,187 (GRCm39)	Q622*	probably null	Het
H2-Q7	T	G	17: 35,658,560 (GRCm39)	M66R	probably benign	Het
Hivep2	T	A	10: 14,004,058 (GRCm39)	C219S	probably damaging	Het
Hlcs	A	T	16: 93,942,261 (GRCm39)	M90K	possibly damaging	Het
Itga8	C	A	2: 12,160,182 (GRCm39)		probably null	Het
Klrk1	T	A	6: 129,598,203 (GRCm39)	M1L	possibly damaging	Het
Kmo	T	A	1: 175,485,941 (GRCm39)	F385I	probably benign	Het
Lrit1	G	C	14: 36,782,052 (GRCm39)	V242L	probably damaging	Het
Lrrc3c	A	G	11: 98,490,075 (GRCm39)	D144G	probably damaging	Het
Lyzl4	C	T	9: 121,412,047 (GRCm39)	W123*	probably null	Het
Map3k1	A	G	13: 111,909,246 (GRCm39)	S77P	probably benign	Het
Mark1	T	C	1: 184,630,984 (GRCm39)	T709A	probably damaging	Het
Nbr1	A	T	11: 101,468,777 (GRCm39)	I878F	probably damaging	Het
Nedd1	A	T	10: 92,547,168 (GRCm39)	H118Q	probably damaging	Het
Nfatc1	C	T	18: 80,678,770 (GRCm39)	G873S	probably damaging	Het
Ngly1	T	G	14: 16,283,467 (GRCm38)	N415K	probably damaging	Het
Nol6	C	A	4: 41,118,962 (GRCm39)	R677L	probably damaging	Het
Nop9	T	C	14: 55,990,270 (GRCm39)	V471A	probably benign	Het
Notch4	A	G	17: 34,802,577 (GRCm39)	N1333D	probably benign	Het
Nsun2	G	A	13: 69,778,152 (GRCm39)	G478R	probably damaging	Het
Or10x4	T	A	1: 174,219,407 (GRCm39)	Y257*	probably null	Het
Or1ad8	T	A	11: 50,898,153 (GRCm39)	M118K	probably damaging	Het
Or5m9b	T	C	2: 85,905,264 (GRCm39)	F60S	probably damaging	Het
Or8g34	A	T	9: 39,373,159 (GRCm39)	Y144F	probably benign	Het
Pcp4l1	T	C	1: 171,002,022 (GRCm39)	E46G	possibly damaging	Het
Plek2	T	C	12: 78,936,083 (GRCm39)		probably null	Het
Rbl1	T	G	2: 157,030,206 (GRCm39)	I434L	probably benign	Het
Ryr2	A	G	13: 11,581,834 (GRCm39)	V4777A	possibly damaging	Het
Sgk1	T	C	10: 21,758,593 (GRCm39)	F19S	probably damaging	Het
Stard9	C	T	2: 120,532,677 (GRCm39)	A2978V	probably benign	Het
Syne1	T	C	10: 5,033,940 (GRCm39)	T7711A	probably benign	Het
Tgfbi	T	G	13: 56,784,989 (GRCm39)	S649A	possibly damaging	Het
Thbs3	T	C	3: 89,132,171 (GRCm39)	V749A	probably benign	Het
Tmem241	G	T	18: 12,180,641 (GRCm39)	H218N	possibly damaging	Het
Tmem266	C	T	9: 55,284,851 (GRCm39)		probably benign	Het
Tnc	T	C	4: 63,900,982 (GRCm39)	I1586M	probably damaging	Het
Ubr4	T	A	4: 139,164,442 (GRCm39)	C2676*	probably null	Het
Unc13a	A	T	8: 72,105,021 (GRCm39)	I747N	probably damaging	Het
Vangl1	A	T	3: 102,073,097 (GRCm39)		probably benign	Het
Vmn1r184	C	T	7: 25,966,563 (GRCm39)	T103I	possibly damaging	Het
Vmn1r204	T	C	13: 22,740,474 (GRCm39)	V35A	probably benign	Het
Vps13b	A	G	15: 35,448,835 (GRCm39)	H603R	possibly damaging	Het
Zfp105	A	G	9: 122,754,303 (GRCm39)	D44G	probably benign	Het
Zfp11	T	C	5: 129,735,152 (GRCm39)	H103R	probably damaging	Het
Zfp335	A	G	2: 164,736,795 (GRCm39)	F947L	possibly damaging	Het

Other mutations in Taf10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R1167:Taf10	UTSW	7	105,392,438 (GRCm39)	missense	probably benign	0.00
R4352:Taf10	UTSW	7	105,392,614 (GRCm39)	unclassified	probably benign
R5341:Taf10	UTSW	7	105,390,139 (GRCm39)	intron	probably benign
R7016:Taf10	UTSW	7	105,393,205 (GRCm39)	splice site	probably null
R7535:Taf10	UTSW	7	105,390,117 (GRCm39)	missense	probably benign	0.04
R8175:Taf10	UTSW	7	105,393,134 (GRCm39)	missense	probably damaging	1.00
R8946:Taf10	UTSW	7	105,393,524 (GRCm39)	start codon destroyed	probably null
R9483:Taf10	UTSW	7	105,393,062 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- AACCCCGTTAGACATTGCCC -3'
(R):5'- AACTGTAACGTCACGCAGC -3'

Sequencing Primer
(F):5'- TGCCACCGAAGCTGAAG -3'
(R):5'- AAGCGGAAGCGGCTCTGTTCGC -3'

Posted On

2018-11-06