Mutagenetix > Incidental Mutations

Incidental Mutation 'R6945:Tchp'

540836

Institutional Source

Beutler Lab

Gene Symbol

Tchp

Ensembl Gene

ENSMUSG00000002486

Gene Name

trichoplein, keratin filament binding

Synonyms

A930031F18Rik

MMRRC Submission

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6945 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

114707760-114722327 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 114709350 bp

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 77 (K77E)

Ref Sequence

ENSEMBL: ENSMUSP00000092009 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000094441]

Predicted Effect

possibly damaging
Transcript: ENSMUST00000094441
AA Change: K77E

PolyPhen 2 Score 0.759 (Sensitivity: 0.85; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000092009
Gene: ENSMUSG00000002486
AA Change: K77E

Domain	Start	End	E-Value	Type
low complexity region	19	35	N/A	INTRINSIC
coiled coil region	69	140	N/A	INTRINSIC
Pfam:TPH	145	485	1.5e-29	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.3%
20x: 97.5%

Validation Efficiency

96% (51/53)

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5430403G16Rik	A	C	5: 109,676,845	N246K	probably benign	Het
AA792892	C	T	5: 94,383,631	H125Y	possibly damaging	Het
Abcc5	T	A	16: 20,400,009	T208S	probably benign	Het
Acaa2	A	G	18: 74,793,309	E112G	probably benign	Het
Adgrb1	A	G	15: 74,550,024	N881S	probably damaging	Het
Adgre1	A	G	17: 57,410,844	E314G	probably benign	Het
Adgre1	A	G	17: 57,420,399	E443G	probably benign	Het
Akp3	A	G	1: 87,125,631	Y102C	probably damaging	Het
Birc6	A	G	17: 74,579,531	N618S	probably benign	Het
Bpifc	A	G	10: 85,979,214	V296A	probably benign	Het
Cacna2d3	G	A	14: 28,969,318		probably benign	Het
Cacnb4	T	C	2: 52,474,954	N99S	probably damaging	Het
Cd38	A	G	5: 43,908,006	Y283C	probably damaging	Het
Celf4	T	A	18: 25,496,236	Q411L	probably damaging	Het
Cemip	A	T	7: 83,998,547	H108Q	probably damaging	Het
Col23a1	A	G	11: 51,561,893	E225G	unknown	Het
Dnah11	T	C	12: 118,060,310	E1902G	probably damaging	Het
Dst	A	G	1: 34,190,490	D2063G	probably damaging	Het
Fsip2	A	T	2: 82,992,840	I6306L	probably benign	Het
Furin	A	G	7: 80,391,090	S667P	possibly damaging	Het
Glmp	T	A	3: 88,325,832	S92R	probably benign	Het
Gm11563	C	G	11: 99,658,472	C152S	unknown	Het
Gm3486	A	G	14: 41,484,561	V185A	probably benign	Het
Gm4070	G	A	7: 105,901,980	Q622*	probably null	Het
Hyal1	C	A	9: 107,579,170	A102E	probably damaging	Het
Invs	T	C	4: 48,421,785	C806R	probably benign	Het
L1td1	T	C	4: 98,733,696	V165A	probably benign	Het
Lama1	A	G	17: 67,813,866	T2666A		Het
Lrit1	G	C	14: 37,060,095	V242L	probably damaging	Het
Lrrc8a	A	G	2: 30,256,227	Y351C	probably damaging	Het
Myh7b	T	C	2: 155,622,232	F551S	possibly damaging	Het
Myo19	A	G	11: 84,897,560	T333A	probably benign	Het
Nrp2	A	T	1: 62,760,788	N387I	probably damaging	Het
Oas2	T	C	5: 120,736,139	D543G	probably benign	Het
Olfr1040	A	G	2: 86,146,084	S217P	probably damaging	Het
Olfr117	A	G	17: 37,659,514	I273T	possibly damaging	Het
Pak7	A	G	2: 136,100,939	V427A	probably benign	Het
Pfas	G	A	11: 69,000,530	A247V	probably benign	Het
Psat1	T	A	19: 15,917,181	T115S	probably benign	Het
Psme4	T	A	11: 30,837,437	D1077E	probably benign	Het
Rabgap1l	A	G	1: 160,682,182	S442P	probably benign	Het
Ralgapa1	A	G	12: 55,776,191	M280T	possibly damaging	Het
Rb1cc1	A	T	1: 6,261,032	E394D	probably damaging	Het
Seh1l	T	C	18: 67,789,390	V271A	probably benign	Het
Sf3b1	A	T	1: 54,997,156	N919K	probably benign	Het
Sftpd	A	G	14: 41,174,492	S245P	possibly damaging	Het
Slc22a15	T	C	3: 101,924,114	E2G	probably damaging	Het
Spta1	A	G	1: 174,209,325	D1134G	possibly damaging	Het
Syna	A	G	5: 134,558,961	V378A	probably damaging	Het
Tescl	T	C	7: 24,333,531	N123S	probably benign	Het
Trio	C	T	15: 27,824,090	R1443Q	probably damaging	Het
Trrap	A	T	5: 144,790,855	Y462F	possibly damaging	Het
Vmn1r78	A	G	7: 12,152,905	T148A	probably benign	Het
Vmn2r111	T	C	17: 22,559,051	N549S	possibly damaging	Het

Other mutations in Tchp

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00421:Tchp	APN	5	114708733	missense	probably benign	0.00
R0266:Tchp	UTSW	5	114709333	missense	possibly damaging	0.87
R0454:Tchp	UTSW	5	114720182	missense	probably benign	0.02
R0709:Tchp	UTSW	5	114717453	missense	probably damaging	1.00
R0725:Tchp	UTSW	5	114719621	missense	probably benign	0.04
R2680:Tchp	UTSW	5	114709519	critical splice donor site	probably null
R4604:Tchp	UTSW	5	114719573	splice site	probably null
R4956:Tchp	UTSW	5	114719620	missense	probably damaging	0.99
R6662:Tchp	UTSW	5	114720015	splice site	probably null
R7002:Tchp	UTSW	5	114708796	missense	probably benign	0.39
R7288:Tchp	UTSW	5	114715569	missense	probably damaging	1.00
R7447:Tchp	UTSW	5	114715655	missense	probably benign	0.00
R8021:Tchp	UTSW	5	114718417	missense	probably damaging	1.00
R8066:Tchp	UTSW	5	114709411	missense	probably benign	0.32
R8087:Tchp	UTSW	5	114719604	missense	probably damaging	1.00
R8403:Tchp	UTSW	5	114708766	missense	possibly damaging	0.87

Predicted Primers

PCR Primer
(F):5'- GTGCTGGGGAGAAGTACTGTAC -3'
(R):5'- TTCCGGACTAGGGTAGTTACC -3'

Sequencing Primer
(F):5'- TGGAACTCACTCTGTAGACCAGG -3'
(R):5'- GGTAGTTACCAGCTTCCTCTG -3'

Posted On

2018-11-28