Mutagenetix > Incidental Mutation

Incidental Mutation 'R6899:Slain1'

541032

Institutional Source

Beutler Lab

Gene Symbol

Slain1

Ensembl Gene

ENSMUSG00000055717

Gene Name

SLAIN motif family, member 1

Synonyms

9630044O09Rik

MMRRC Submission

044993-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.297) question?

Stock #

R6899 (G1)

Quality Score

100.008

Status

Validated

Chromosome

Chromosomal Location

103887664-103942343 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 103888215 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Proline to Leucine at position 45 (P45L)

Ref Sequence

ENSEMBL: ENSMUSP00000125128 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000069443] [ENSMUST00000160805] [ENSMUST00000162818]

AlphaFold

Q68FF7

Predicted Effect

unknown
Transcript: ENSMUST00000069443
AA Change: P142L

SMART Domains

Protein: ENSMUSP00000070592
Gene: ENSMUSG00000055717
AA Change: P142L

Domain	Start	End	E-Value	Type
SCOP:d1gw5a_	13	72	2e-3	SMART
low complexity region	91	102	N/A	INTRINSIC
low complexity region	105	120	N/A	INTRINSIC
low complexity region	129	173	N/A	INTRINSIC
Pfam:SLAIN	185	237	6.7e-19	PFAM
Pfam:SLAIN	230	579	1.7e-138	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000160805
AA Change: P45L

PolyPhen 2 Score 0.930 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000125128
Gene: ENSMUSG00000055717
AA Change: P45L

Domain	Start	End	E-Value	Type
low complexity region	8	23	N/A	INTRINSIC
low complexity region	32	76	N/A	INTRINSIC
Pfam:SLAIN	88	532	2.6e-144	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000162818

SMART Domains

Protein: ENSMUSP00000123742
Gene: ENSMUSG00000055717

Domain	Start	End	E-Value	Type
Pfam:SLAIN	19	212	2e-86	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.0%
20x: 95.9%

Validation Efficiency

98% (56/57)

Allele List at MGI

All alleles(6) : Gene trapped(6)

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca16	A	G	7: 120,126,264 (GRCm39)	Y1140C	probably damaging	Het
Actl9	G	A	17: 33,652,533 (GRCm39)	G198S	probably damaging	Het
Adcy2	A	T	13: 69,130,500 (GRCm39)	M129K	probably damaging	Het
Apmap	T	A	2: 150,436,228 (GRCm39)	I107F	probably benign	Het
Arrdc3	T	C	13: 81,037,330 (GRCm39)	I162T	probably damaging	Het
Asprv1	T	C	6: 86,605,742 (GRCm39)	L196P	probably damaging	Het
Atpsckmt	A	G	15: 31,617,257 (GRCm39)	S163G	probably benign	Het
Bag2	A	G	1: 33,785,912 (GRCm39)	S137P	possibly damaging	Het
Borcs5	T	A	6: 134,687,173 (GRCm39)	M177K	probably benign	Het
C8b	A	T	4: 104,644,071 (GRCm39)	K246M	probably benign	Het
Cdo1	A	G	18: 46,856,407 (GRCm39)	C76R	probably damaging	Het
Ces2b	T	A	8: 105,563,398 (GRCm39)		probably null	Het
Csf2rb	G	A	15: 78,224,902 (GRCm39)	S194N	probably benign	Het
Dap3	A	G	3: 88,840,907 (GRCm39)	F77L	probably benign	Het
Dars1	A	G	1: 128,341,483 (GRCm39)	V44A	possibly damaging	Het
Dhtkd1	T	A	2: 5,922,776 (GRCm39)	D461V	possibly damaging	Het
Ero1a	A	C	14: 45,530,396 (GRCm39)	H345Q	probably benign	Het
Fzd8	T	A	18: 9,214,729 (GRCm39)	S604T	probably damaging	Het
Gpatch2l	G	A	12: 86,290,958 (GRCm39)	R47H	probably damaging	Het
Gramd1c	T	A	16: 43,860,505 (GRCm39)	Y64F	probably benign	Het
Heatr5b	T	A	17: 79,110,938 (GRCm39)	Y970F	probably benign	Het
Hoxc10	A	G	15: 102,875,942 (GRCm39)	E217G	possibly damaging	Het
Hsd17b14	A	T	7: 45,212,352 (GRCm39)	H128L	possibly damaging	Het
Idh2	TCCCAGG	T	7: 79,748,079 (GRCm39)		probably benign	Het
Ifna9	A	G	4: 88,510,300 (GRCm39)	F108S	probably damaging	Het
Ikbke	A	G	1: 131,203,499 (GRCm39)	V58A	probably damaging	Het
Inpp5e	G	A	2: 26,290,060 (GRCm39)	R462C	possibly damaging	Het
Junb	A	G	8: 85,704,353 (GRCm39)	F236L	probably benign	Het
Klhl36	T	C	8: 120,596,881 (GRCm39)	V194A	probably benign	Het
Lsg1	A	T	16: 30,400,906 (GRCm39)	D134E	probably benign	Het
Megf8	G	T	7: 25,060,138 (GRCm39)	C2343F	probably damaging	Het
Mtres1	T	C	10: 43,408,780 (GRCm39)	E121G	possibly damaging	Het
Myom3	G	A	4: 135,530,603 (GRCm39)	G1172R	probably damaging	Het
Nasp	A	T	4: 116,461,530 (GRCm39)	V548E	probably damaging	Het
Nubpl	T	A	12: 52,357,536 (GRCm39)	S317T	probably benign	Het
Nup210l	A	G	3: 90,075,204 (GRCm39)	D838G	possibly damaging	Het
Oxsr1	C	T	9: 119,076,188 (GRCm39)	A373T	probably benign	Het
Psat1	C	T	19: 15,895,569 (GRCm39)		probably null	Het
Rsrc1	C	T	3: 66,901,982 (GRCm39)	P44L	unknown	Het
Slc16a8	A	G	15: 79,137,949 (GRCm39)	V20A	possibly damaging	Het
Slc22a13	A	T	9: 119,025,473 (GRCm39)	M145K	probably damaging	Het
Slc22a4	G	A	11: 53,879,739 (GRCm39)	T440I	probably damaging	Het
Slc39a12	C	T	2: 14,394,352 (GRCm39)	P74L	probably damaging	Het
Sod3	A	G	5: 52,526,050 (GRCm39)	T250A	unknown	Het
Syne2	A	G	12: 76,142,503 (GRCm39)		probably null	Het
Tctn1	A	G	5: 122,387,019 (GRCm39)	Y299H	probably damaging	Het
Tfcp2l1	A	G	1: 118,603,305 (GRCm39)	M448V	probably benign	Het
Tfpi	C	T	2: 84,275,153 (GRCm39)	G152S	probably damaging	Het
Thap4	A	G	1: 93,678,691 (GRCm39)	S32P	probably damaging	Het
Tmem132c	T	A	5: 127,628,744 (GRCm39)	W549R	probably damaging	Het
Vmn2r29	T	C	7: 7,244,641 (GRCm39)	E411G	probably damaging	Het
Washc4	C	A	10: 83,411,919 (GRCm39)	D683E	probably benign	Het
Wdr3	A	T	3: 100,057,217 (GRCm39)	V462D	possibly damaging	Het
Wdr5b	T	C	16: 35,862,150 (GRCm39)	S90P	probably damaging	Het
Zfp407	A	G	18: 84,579,559 (GRCm39)	L518P	possibly damaging	Het
Zfp53	A	G	17: 21,728,707 (GRCm39)	I247V	possibly damaging	Het

Other mutations in Slain1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02248:Slain1	APN	14	103,923,213 (GRCm39)	missense	probably damaging	1.00
P0016:Slain1	UTSW	14	103,923,110 (GRCm39)	missense	probably benign	0.37
R0113:Slain1	UTSW	14	103,923,261 (GRCm39)	splice site	probably benign
R0547:Slain1	UTSW	14	103,932,711 (GRCm39)	missense	probably damaging	1.00
R2113:Slain1	UTSW	14	103,888,282 (GRCm39)	missense	possibly damaging	0.81
R4986:Slain1	UTSW	14	103,925,541 (GRCm39)	missense	probably damaging	1.00
R6368:Slain1	UTSW	14	103,894,391 (GRCm39)	missense	probably benign	0.03
R7355:Slain1	UTSW	14	103,940,012 (GRCm39)	frame shift	probably null
R7442:Slain1	UTSW	14	103,923,150 (GRCm39)	missense	probably damaging	1.00
R7498:Slain1	UTSW	14	103,893,429 (GRCm39)	splice site	probably null
R7910:Slain1	UTSW	14	103,923,200 (GRCm39)	missense	probably damaging	1.00
R8043:Slain1	UTSW	14	103,925,782 (GRCm39)	missense	possibly damaging	0.95
R8845:Slain1	UTSW	14	103,925,747 (GRCm39)	missense	possibly damaging	0.87
R8872:Slain1	UTSW	14	103,925,841 (GRCm39)	critical splice donor site	probably null
R8929:Slain1	UTSW	14	103,923,164 (GRCm39)	missense	probably damaging	0.99
R9008:Slain1	UTSW	14	103,923,191 (GRCm39)	missense	probably damaging	1.00
R9489:Slain1	UTSW	14	103,902,112 (GRCm39)	missense
R9514:Slain1	UTSW	14	103,932,748 (GRCm39)	missense	probably damaging	0.99
R9605:Slain1	UTSW	14	103,902,112 (GRCm39)	missense
R9683:Slain1	UTSW	14	103,925,621 (GRCm39)	missense	probably damaging	1.00
Z1177:Slain1	UTSW	14	103,921,670 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- CAGGAGCTGGTGCGCAAG -3'
(R):5'- CCTGCTAGGCCTCTGGGTC -3'

Sequencing Primer
(F):5'- GCAGAACGAGCAGCTGC -3'
(R):5'- TAGGCCTCTGGGTCCCCTG -3'

Posted On

2018-11-28