Mutagenetix > Incidental Mutations

Incidental Mutation 'R6954:B4galnt4'

541368

Institutional Source

Beutler Lab

Gene Symbol

B4galnt4

Ensembl Gene

ENSMUSG00000055629

Gene Name

beta-1,4-N-acetyl-galactosaminyl transferase 4

Synonyms

LOC381951

MMRRC Submission

Accession Numbers

Genbank: NM_177897; MGI: 2652891

Is this an essential gene?

Probably non essential (E-score: 0.096) question?

Stock #

R6954 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

141061104-141072400 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 141067232 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 326 (T326A)

Ref Sequence

ENSEMBL: ENSMUSP00000039758 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000048002]

AlphaFold

Q766D5

Predicted Effect

probably benign
Transcript: ENSMUST00000048002
AA Change: T326A

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000039758
Gene: ENSMUSG00000055629
AA Change: T326A

Domain	Start	End	E-Value	Type
transmembrane domain	13	31	N/A	INTRINSIC
low complexity region	68	83	N/A	INTRINSIC
PA14	129	276	6.07e-7	SMART
low complexity region	412	421	N/A	INTRINSIC
low complexity region	433	449	N/A	INTRINSIC
low complexity region	461	481	N/A	INTRINSIC
low complexity region	634	660	N/A	INTRINSIC
Pfam:CHGN	691	1024	8.9e-31	PFAM
Pfam:Glyco_transf_7C	939	1017	1.2e-15	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000210517

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.3%
20x: 97.5%

Validation Efficiency

98% (57/58)

Allele List at MGI

All alleles(3) : Targeted, knock-out(1) Gene trapped(2)

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2210407C18Rik	T	A	11: 58,608,488	Y168F	probably benign	Het
4930451I11Rik	A	T	7: 126,830,637		probably null	Het
Alox5	A	C	6: 116,420,280	Y314*	probably null	Het
Ap4e1	T	C	2: 127,064,951	S1044P	probably benign	Het
Ash2l	A	G	8: 25,822,768	V391A	possibly damaging	Het
Ccm2	T	A	11: 6,594,239	I345N	probably damaging	Het
Cntnap3	G	A	13: 64,748,559	H1034Y	probably benign	Het
Cpsf1	A	G	15: 76,599,496	L849S	probably damaging	Het
Ctrb1	A	G	8: 111,686,664	S239P	probably damaging	Het
D13Ertd608e	A	G	13: 119,846,130	D20G	possibly damaging	Het
Dennd1b	T	A	1: 139,168,945		probably benign	Het
Dnah17	A	G	11: 118,066,432	I2773T	probably damaging	Het
Eif2b2	T	A	12: 85,226,043	F267L	probably damaging	Het
Fcrls	A	G	3: 87,263,676		probably benign	Het
Furin	G	T	7: 80,396,964	D181E	possibly damaging	Het
Gm29106	T	A	1: 118,200,587	C670S	probably damaging	Het
Gm6309	A	T	5: 146,168,490	D204E	possibly damaging	Het
Hsf2	T	A	10: 57,504,643	I191N	probably damaging	Het
Hspa12a	T	C	19: 58,799,692	D566G	probably benign	Het
Igf1	G	C	10: 87,864,860	V49L	probably damaging	Het
Igfbpl1	C	T	4: 45,826,663	C44Y	probably damaging	Het
Letm1	G	A	5: 33,782,507	R16C	probably benign	Het
Marf1	A	G	16: 14,138,520	V819A	probably damaging	Het
Mfsd4b4	A	T	10: 39,891,952	S428T	probably benign	Het
Myo1d	T	C	11: 80,674,957	I347M	probably benign	Het
Myo9b	A	G	8: 71,290,819	I175V	probably damaging	Het
Naip5	A	T	13: 100,223,414	V438E	probably damaging	Het
Nup205	T	A	6: 35,208,109	V768E	possibly damaging	Het
Olfr1015	T	A	2: 85,786,382	Y290*	probably null	Het
Olfr731	A	T	14: 50,238,110	Y258*	probably null	Het
Pcdh15	C	T	10: 74,645,989	H1651Y	possibly damaging	Het
Pdgfra	A	T	5: 75,173,394	Q376L	possibly damaging	Het
Pign	T	C	1: 105,553,897	I791M	probably benign	Het
Pik3c2b	T	G	1: 133,066,303	S2A	possibly damaging	Het
Pip5k1a	A	T	3: 95,068,247	I304K	probably damaging	Het
Pkdrej	A	T	15: 85,817,853	L1294*	probably null	Het
Pprc1	T	C	19: 46,064,433	S797P	probably damaging	Het
Prob1	A	G	18: 35,654,268	V311A	probably benign	Het
Prune2	C	A	19: 17,000,021	T40K	probably damaging	Het
Rif1	T	G	2: 52,112,691	D2052E	probably benign	Het
Sall1	A	G	8: 89,032,891	V195A	probably damaging	Het
Scfd1	T	C	12: 51,427,946		probably null	Het
Sidt2	A	T	9: 45,952,850	N123K	probably benign	Het
Slc22a6	G	A	19: 8,622,096	A320T	probably benign	Het
Slc25a10	A	G	11: 120,498,147	H279R	probably benign	Het
Slc35b4	A	G	6: 34,158,621	V252A	probably benign	Het
Slc46a3	T	C	5: 147,886,340	T231A	probably benign	Het
Stxbp1	T	A	2: 32,801,893	H429L	probably damaging	Het
Tas2r134	C	T	2: 51,627,770	T87I	probably benign	Het
Tdpoz2	A	T	3: 93,652,275	L130H	probably damaging	Het
Tmem69	T	C	4: 116,554,724		probably null	Het
Tmppe	G	A	9: 114,405,523	V297I	probably benign	Het
Ung	G	T	5: 114,131,337	A37S	probably benign	Het
Vdac1	T	C	11: 52,386,373	Y237H	probably damaging	Het
Vgll4	T	C	6: 114,921,367	Y11C	probably damaging	Het
Vmn1r24	A	G	6: 57,956,452	I27T	probably benign	Het
Zfp280b	T	A	10: 76,039,688	M467K	probably benign	Het
Zkscan4	A	G	13: 21,484,365	I329V	probably damaging	Het

Other mutations in B4galnt4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01598:B4galnt4	APN	7	141070515	missense	probably benign	0.15
IGL02055:B4galnt4	APN	7	141070818	missense	probably damaging	1.00
IGL02248:B4galnt4	APN	7	141067808	unclassified	probably benign
IGL02955:B4galnt4	APN	7	141064678	missense	probably null	0.08
IGL03334:B4galnt4	APN	7	141067441	splice site	probably null
H8786:B4galnt4	UTSW	7	141071322	missense	probably damaging	0.99
R0520:B4galnt4	UTSW	7	141067373	nonsense	probably null
R0735:B4galnt4	UTSW	7	141064323	missense	probably benign	0.24
R1355:B4galnt4	UTSW	7	141065395	missense	probably damaging	1.00
R1864:B4galnt4	UTSW	7	141070533	missense	probably damaging	1.00
R1874:B4galnt4	UTSW	7	141070526	missense	probably damaging	1.00
R1928:B4galnt4	UTSW	7	141068148	nonsense	probably null
R1969:B4galnt4	UTSW	7	141064848	missense	probably benign	0.01
R3429:B4galnt4	UTSW	7	141070839	missense	probably damaging	1.00
R4239:B4galnt4	UTSW	7	141061326	missense	probably damaging	1.00
R4382:B4galnt4	UTSW	7	141070536	missense	probably damaging	0.99
R4517:B4galnt4	UTSW	7	141067722	missense	probably damaging	1.00
R4748:B4galnt4	UTSW	7	141071720	missense	probably damaging	1.00
R4827:B4galnt4	UTSW	7	141068479	missense	probably benign	0.00
R4831:B4galnt4	UTSW	7	141067721	missense	probably damaging	0.99
R4831:B4galnt4	UTSW	7	141064557	critical splice donor site	probably null
R4898:B4galnt4	UTSW	7	141068260	missense	probably benign	0.11
R5028:B4galnt4	UTSW	7	141068062	missense	probably benign	0.40
R5249:B4galnt4	UTSW	7	141065070	missense	probably damaging	1.00
R5267:B4galnt4	UTSW	7	141070611	missense	probably damaging	0.99
R5728:B4galnt4	UTSW	7	141070575	missense	probably benign	0.00
R5924:B4galnt4	UTSW	7	141070829	missense	probably damaging	1.00
R6063:B4galnt4	UTSW	7	141064730	missense	probably benign	0.08
R6311:B4galnt4	UTSW	7	141068659	missense	probably damaging	1.00
R6376:B4galnt4	UTSW	7	141067422	missense	possibly damaging	0.87
R6689:B4galnt4	UTSW	7	141067984	missense	probably benign	0.25
R6974:B4galnt4	UTSW	7	141067536	missense	possibly damaging	0.95
R7041:B4galnt4	UTSW	7	141070680	missense	probably damaging	1.00
R7092:B4galnt4	UTSW	7	141068636	missense	probably damaging	1.00
R7359:B4galnt4	UTSW	7	141071284	missense	probably damaging	1.00
R7367:B4galnt4	UTSW	7	141064475	missense	probably damaging	1.00
R7409:B4galnt4	UTSW	7	141067003	splice site	probably null
R7519:B4galnt4	UTSW	7	141064344	missense	probably damaging	1.00
R7664:B4galnt4	UTSW	7	141067713	missense	probably damaging	1.00
R7679:B4galnt4	UTSW	7	141067765	missense	probably benign	0.28
R7782:B4galnt4	UTSW	7	141065075	missense	probably damaging	1.00
R8103:B4galnt4	UTSW	7	141064651	missense	possibly damaging	0.91
R8783:B4galnt4	UTSW	7	141063846	missense	probably damaging	1.00
R8796:B4galnt4	UTSW	7	141067575	missense	probably damaging	1.00
R8855:B4galnt4	UTSW	7	141068575	missense	possibly damaging	0.68
RF007:B4galnt4	UTSW	7	141070696	critical splice donor site	probably null
YA93:B4galnt4	UTSW	7	141067411	missense	possibly damaging	0.77

Predicted Primers

PCR Primer
(F):5'- ATTTCCTCAGGGGATGGCTG -3'
(R):5'- TGGCTATGGGGAAATCCTTGAG -3'

Sequencing Primer
(F):5'- GGCTCAGCATGGGGATG -3'
(R):5'- CTTGAGGATATAGGTGGGGGCATAG -3'

Posted On

2018-11-28