Mutagenetix > Incidental Mutation

Incidental Mutation 'R6957:Alcam'

541550

Institutional Source

Beutler Lab

Gene Symbol

Alcam

Ensembl Gene

ENSMUSG00000022636

Gene Name

activated leukocyte cell adhesion molecule

Synonyms

MuSC, SC1, BEN, CD166, DM-GRASP

MMRRC Submission

045068-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.259) question?

Stock #

R6957 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

52069359-52273444 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 52097257 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 333 (D333G)

Ref Sequence

ENSEMBL: ENSMUSP00000129714 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023312] [ENSMUST00000164728] [ENSMUST00000170035]

AlphaFold

Q61490

Predicted Effect

probably damaging
Transcript: ENSMUST00000023312
AA Change: D333G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000023312
Gene: ENSMUSG00000022636
AA Change: D333G

Domain	Start	End	E-Value	Type
IG	26	131	8.46e-2	SMART
Pfam:C2-set_2	137	231	5.1e-24	PFAM
IG	255	330	6.35e-6	SMART
IG	339	413	6.26e-5	SMART
Pfam:Ig_3	415	489	3.8e-6	PFAM
transmembrane domain	528	550	N/A	INTRINSIC
low complexity region	569	582	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000164728
AA Change: D333G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000127141
Gene: ENSMUSG00000022636
AA Change: D333G

Domain	Start	End	E-Value	Type
IG	26	131	8.46e-2	SMART
Pfam:C2-set_2	137	231	1e-22	PFAM
Pfam:Ig_2	147	235	3.8e-2	PFAM
IG	255	330	6.35e-6	SMART
IG	339	413	6.26e-5	SMART
Pfam:Ig_3	415	496	1.9e-7	PFAM
Pfam:Ig_2	415	502	1.5e-6	PFAM
transmembrane domain	528	550	N/A	INTRINSIC

Predicted Effect

SMART Domains

Protein: ENSMUSP00000130563
Gene: ENSMUSG00000022636
AA Change: D94G

Domain	Start	End	E-Value	Type
Pfam:C2-set_2	1	80	3.6e-21	PFAM
IG	101	175	6.26e-5	SMART
Pfam:Ig_3	177	251	1.7e-6	PFAM
transmembrane domain	290	312	N/A	INTRINSIC
low complexity region	331	344	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000170035
AA Change: D333G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000129714
Gene: ENSMUSG00000022636
AA Change: D333G

Domain	Start	End	E-Value	Type
IG	26	131	8.46e-2	SMART
Pfam:C2-set_2	137	231	3.4e-23	PFAM
Pfam:Ig_2	147	235	1.3e-2	PFAM
IG	255	330	6.35e-6	SMART
IG	339	413	6.26e-5	SMART
Pfam:Ig_3	415	491	5.9e-8	PFAM
Pfam:Ig_2	415	502	4.9e-7	PFAM
transmembrane domain	515	537	N/A	INTRINSIC
low complexity region	556	569	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 98.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes activated leukocyte cell adhesion molecule (ALCAM), also known as CD166 (cluster of differentiation 166), which is a member of a subfamily of immunoglobulin receptors with five immunoglobulin-like domains (VVC2C2C2) in the extracellular domain. This protein binds to T-cell differentiation antigene CD6, and is implicated in the processes of cell adhesion and migration. Multiple alternatively spliced transcript variants encoding different isoforms have been found. [provided by RefSeq, Aug 2011]
PHENOTYPE: Homozygous null mice display abnormal motor neuron and retinal ganglion cell morphology and retinal dysplasia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310009B15Rik	A	G	1: 138,779,857 (GRCm39)	S132P	probably damaging	Het
Abcb5	A	G	12: 118,871,270 (GRCm39)	F710L	probably damaging	Het
Acsm4	T	G	7: 119,310,622 (GRCm39)	V503G	probably damaging	Het
Adam26a	T	A	8: 44,021,940 (GRCm39)	M517L	probably benign	Het
Adcy10	C	A	1: 165,391,854 (GRCm39)	L1345I	probably damaging	Het
Adgrv1	T	C	13: 81,715,609 (GRCm39)	I860V	probably benign	Het
Amt	C	A	9: 108,177,032 (GRCm39)	F213L	possibly damaging	Het
Ascc3	A	G	10: 50,604,278 (GRCm39)	T1333A	probably damaging	Het
Asxl3	C	A	18: 22,655,148 (GRCm39)	L1053I	probably damaging	Het
Atxn10	T	C	15: 85,220,699 (GRCm39)	S12P	probably damaging	Het
AU021092	T	C	16: 5,030,017 (GRCm39)	I333V	probably benign	Het
Birc6	A	G	17: 74,886,486 (GRCm39)	I577V	probably benign	Het
Cadm2	A	T	16: 66,609,726 (GRCm39)	F132I	probably benign	Het
Casp3	T	A	8: 47,087,308 (GRCm39)	V85D	probably damaging	Het
Ccdc168	C	T	1: 44,096,367 (GRCm39)	C1577Y	probably benign	Het
Ccdc85a	A	T	11: 28,342,944 (GRCm39)		probably benign	Het
Cd22	T	C	7: 30,566,999 (GRCm39)	R760G	possibly damaging	Het
Cela3a	A	T	4: 137,135,441 (GRCm39)	W41R	probably damaging	Het
Cep164	A	G	9: 45,683,578 (GRCm39)		probably null	Het
Cntnap5b	A	G	1: 100,202,197 (GRCm39)	E348G	probably benign	Het
Ddx20	C	A	3: 105,591,626 (GRCm39)	K181N	probably benign	Het
Dnah14	G	C	1: 181,612,740 (GRCm39)	A3846P	possibly damaging	Het
Ern1	A	C	11: 106,294,365 (GRCm39)	I813S	probably damaging	Het
Fam181a	G	A	12: 103,282,773 (GRCm39)	G226D	probably damaging	Het
Fam186a	T	A	15: 99,844,357 (GRCm39)	D629V	unknown	Het
Gipr	T	A	7: 18,898,529 (GRCm39)	T26S	probably benign	Het
Gm3159	A	G	14: 4,398,530 (GRCm38)	R74G	possibly damaging	Het
Greb1l	G	A	18: 10,558,786 (GRCm39)	V1814I	probably benign	Het
Hacd1	A	T	2: 14,049,664 (GRCm39)	V98E	probably damaging	Het
Iars1	T	G	13: 49,875,637 (GRCm39)	F775V	probably damaging	Het
Il12rb2	G	A	6: 67,269,636 (GRCm39)	L726F	possibly damaging	Het
Itih4	T	C	14: 30,614,560 (GRCm39)	V474A	probably damaging	Het
Kmt2a	A	C	9: 44,731,319 (GRCm39)		probably benign	Het
Ktn1	T	A	14: 47,904,810 (GRCm39)	L196*	probably null	Het
Lipo4	A	G	19: 33,476,767 (GRCm39)	V327A	probably benign	Het
Lratd2	T	C	15: 60,694,934 (GRCm39)	T271A	probably benign	Het
Lrit1	G	C	14: 36,782,052 (GRCm39)	V242L	probably damaging	Het
Lrp4	C	A	2: 91,317,387 (GRCm39)	T837K	probably damaging	Het
Mad1l1	G	T	5: 140,051,572 (GRCm39)	F664L	probably damaging	Het
Mecr	A	G	4: 131,589,172 (GRCm39)	T247A	probably benign	Het
Msi1	G	A	5: 115,583,483 (GRCm39)	A228T	probably benign	Het
Mup5	T	A	4: 61,751,273 (GRCm39)	N125I	probably damaging	Het
Mybl2	C	T	2: 162,914,728 (GRCm39)	S282F	possibly damaging	Het
Myom2	G	A	8: 15,167,741 (GRCm39)	A1109T	probably null	Het
Nalcn	T	C	14: 123,744,966 (GRCm39)	D354G	probably damaging	Het
Nckap1l	T	C	15: 103,399,938 (GRCm39)	V1040A	possibly damaging	Het
Nlrp12	T	A	7: 3,271,160 (GRCm39)	D1051V	probably damaging	Het
Nudt7	A	G	8: 114,860,385 (GRCm39)	K16R	probably benign	Het
Or4b1	G	T	2: 89,979,494 (GRCm39)	Y285*	probably null	Het
Or8g29-ps1	A	G	9: 39,200,577 (GRCm39)	V203A	unknown	Het
Paqr3	A	T	5: 97,256,110 (GRCm39)	I88K	possibly damaging	Het
Parp9	A	G	16: 35,768,716 (GRCm39)	M299V	probably benign	Het
Pde4dip	A	T	3: 97,731,649 (GRCm39)		probably null	Het
Pex13	T	G	11: 23,605,628 (GRCm39)	M201L	probably benign	Het
Pfas	C	A	11: 68,884,709 (GRCm39)	V498L	probably benign	Het
Phka2	G	A	X: 159,316,044 (GRCm39)	V230I	probably damaging	Het
Plec	T	A	15: 76,070,414 (GRCm39)	D932V	probably damaging	Het
Qng1	C	A	13: 58,529,775 (GRCm39)	C279F	probably damaging	Het
Qsox2	C	T	2: 26,107,654 (GRCm39)	A445T	probably benign	Het
Rapgef1	C	A	2: 29,623,710 (GRCm39)	Q820K	possibly damaging	Het
Samd13	A	G	3: 146,368,424 (GRCm39)		probably null	Het
Samm50	G	T	15: 84,082,850 (GRCm39)	D104Y	probably damaging	Het
Sbk3	A	T	7: 4,970,522 (GRCm39)	F282L	probably benign	Het
Sfmbt1	C	T	14: 30,509,546 (GRCm39)	H342Y	probably benign	Het
Sgo2b	CCATCATCATCATCATCATCAT	CCATCATCATCATCATCAT	8: 64,384,489 (GRCm39)		probably benign	Het
Slc12a2	T	A	18: 58,043,344 (GRCm39)	L596*	probably null	Het
Spata31h1	A	T	10: 82,129,620 (GRCm39)	I1130K	probably benign	Het
St8sia3	T	C	18: 64,404,853 (GRCm39)	S377P	probably benign	Het
Stmnd1	T	G	13: 46,427,375 (GRCm39)	S28A	probably benign	Het
Syne3	A	T	12: 104,920,561 (GRCm39)	L458Q	probably damaging	Het
Synm	C	T	7: 67,385,848 (GRCm39)	V163I	probably benign	Het
Tbc1d23	A	G	16: 57,028,686 (GRCm39)	C161R	probably damaging	Het
Tnfrsf4	G	A	4: 156,100,625 (GRCm39)	V215I	probably benign	Het
Vars2	T	G	17: 35,977,967 (GRCm39)	K67Q	probably benign	Het
Vmn2r13	A	T	5: 109,304,753 (GRCm39)	Y559*	probably null	Het
Wdpcp	T	C	11: 21,671,154 (GRCm39)	I465T	possibly damaging	Het
Zwilch	A	C	9: 64,069,844 (GRCm39)		probably null	Het

Other mutations in Alcam

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00489:Alcam	APN	16	52,115,380 (GRCm39)	splice site	probably benign
IGL00737:Alcam	APN	16	52,073,543 (GRCm39)	missense	unknown
IGL01514:Alcam	APN	16	52,094,653 (GRCm39)	splice site	probably benign
IGL01837:Alcam	APN	16	52,073,531 (GRCm39)	missense	probably benign	0.10
IGL02143:Alcam	APN	16	52,125,982 (GRCm39)	missense	probably damaging	0.99
IGL02231:Alcam	APN	16	52,094,413 (GRCm39)	splice site	probably benign
IGL02375:Alcam	APN	16	52,109,299 (GRCm39)	missense	probably benign	0.00
IGL02579:Alcam	APN	16	52,091,135 (GRCm39)	missense	probably damaging	1.00
IGL02678:Alcam	APN	16	52,094,401 (GRCm39)	missense	probably damaging	1.00
IGL02798:Alcam	APN	16	52,126,002 (GRCm39)	missense	probably damaging	1.00
IGL02974:Alcam	APN	16	52,116,079 (GRCm39)	missense	probably benign	0.05
IGL03335:Alcam	APN	16	52,111,366 (GRCm39)	nonsense	probably null
PIT4402001:Alcam	UTSW	16	52,115,497 (GRCm39)	missense	probably damaging	1.00
PIT4651001:Alcam	UTSW	16	52,115,550 (GRCm39)	missense	probably benign
R0282:Alcam	UTSW	16	52,116,104 (GRCm39)	missense	probably damaging	0.99
R0395:Alcam	UTSW	16	52,130,227 (GRCm39)	missense	probably benign	0.42
R0760:Alcam	UTSW	16	52,116,035 (GRCm39)	missense	probably benign	0.32
R0882:Alcam	UTSW	16	52,073,573 (GRCm39)	missense	possibly damaging	0.47
R1433:Alcam	UTSW	16	52,116,115 (GRCm39)	critical splice acceptor site	probably null
R1677:Alcam	UTSW	16	52,091,136 (GRCm39)	missense	probably damaging	1.00
R1751:Alcam	UTSW	16	52,091,077 (GRCm39)	missense	probably damaging	1.00
R1767:Alcam	UTSW	16	52,091,077 (GRCm39)	missense	probably damaging	1.00
R2440:Alcam	UTSW	16	52,125,976 (GRCm39)	missense	probably damaging	1.00
R2963:Alcam	UTSW	16	52,115,404 (GRCm39)	missense	probably benign	0.00
R3410:Alcam	UTSW	16	52,130,261 (GRCm39)	missense	probably null	0.03
R4327:Alcam	UTSW	16	52,073,579 (GRCm39)	missense	possibly damaging	0.62
R4328:Alcam	UTSW	16	52,073,579 (GRCm39)	missense	possibly damaging	0.62
R4888:Alcam	UTSW	16	52,089,176 (GRCm39)	missense	probably benign	0.03
R5088:Alcam	UTSW	16	52,109,290 (GRCm39)	missense	probably damaging	1.00
R5202:Alcam	UTSW	16	52,094,599 (GRCm39)	missense	probably damaging	1.00
R5208:Alcam	UTSW	16	52,115,411 (GRCm39)	nonsense	probably null
R5278:Alcam	UTSW	16	52,094,638 (GRCm39)	missense	probably benign
R5799:Alcam	UTSW	16	52,130,212 (GRCm39)	missense	probably benign	0.28
R5909:Alcam	UTSW	16	52,111,356 (GRCm39)	missense	probably benign
R5960:Alcam	UTSW	16	52,115,489 (GRCm39)	missense	probably benign	0.30
R6194:Alcam	UTSW	16	52,088,761 (GRCm39)	missense	probably damaging	1.00
R6434:Alcam	UTSW	16	52,109,190 (GRCm39)	splice site	probably null
R6831:Alcam	UTSW	16	52,130,264 (GRCm39)	missense	probably benign	0.00
R6868:Alcam	UTSW	16	52,088,748 (GRCm39)	missense	probably damaging	1.00
R6930:Alcam	UTSW	16	52,126,018 (GRCm39)	missense	probably benign	0.14
R7109:Alcam	UTSW	16	52,097,192 (GRCm39)	missense	probably damaging	0.98
R7473:Alcam	UTSW	16	52,272,882 (GRCm39)	unclassified	probably benign
R7562:Alcam	UTSW	16	52,089,186 (GRCm39)	missense	probably benign	0.00
R7568:Alcam	UTSW	16	52,088,749 (GRCm39)	missense	probably damaging	1.00
R7631:Alcam	UTSW	16	52,109,276 (GRCm39)	splice site	probably null
R8362:Alcam	UTSW	16	52,115,387 (GRCm39)	missense	probably damaging	0.99
R8996:Alcam	UTSW	16	52,126,114 (GRCm39)	missense	probably benign	0.30

Predicted Primers

PCR Primer
(F):5'- TGATCATACAAGCCACGACTG -3'
(R):5'- AGGCTCAGCTGAATCTTCTC -3'

Sequencing Primer
(F):5'- GCCACGACTGGATATACATATTGG -3'
(R):5'- AGCTGAATCTTCTCCAATCTAGTTG -3'

Posted On

2018-11-28