Mutagenetix > Incidental Mutation

Incidental Mutation 'R6957:Tbc1d23'

541551

Institutional Source

Beutler Lab

Gene Symbol

Tbc1d23

Ensembl Gene

ENSMUSG00000022749

Gene Name

TBC1 domain family, member 23

Synonyms

4930451A13Rik, D030022P07Rik

MMRRC Submission

045068-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.792) question?

Stock #

R6957 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

56989225-57051867 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 57028686 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Arginine at position 161 (C161R)

Ref Sequence

ENSEMBL: ENSMUSP00000023431 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023431] [ENSMUST00000226586] [ENSMUST00000228172]

AlphaFold

Q8K0F1

Predicted Effect

probably damaging
Transcript: ENSMUST00000023431
AA Change: C161R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000023431
Gene: ENSMUSG00000022749
AA Change: C161R

Domain	Start	End	E-Value	Type
TBC	41	249	7.22e-5	SMART
RHOD	323	443	7.83e-1	SMART
low complexity region	459	472	N/A	INTRINSIC
Blast:TBC	506	630	8e-14	BLAST

Predicted Effect

possibly damaging
Transcript: ENSMUST00000226586
AA Change: C161R

PolyPhen 2 Score 0.891 (Sensitivity: 0.82; Specificity: 0.94)

Predicted Effect

probably benign
Transcript: ENSMUST00000228172

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 98.0%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a gene trapped allele exhibit increased serum cytokine production and inflammatory cells in the peritoneum following i.p. lipopolysaccharide injection. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310009B15Rik	A	G	1: 138,779,857 (GRCm39)	S132P	probably damaging	Het
Abcb5	A	G	12: 118,871,270 (GRCm39)	F710L	probably damaging	Het
Acsm4	T	G	7: 119,310,622 (GRCm39)	V503G	probably damaging	Het
Adam26a	T	A	8: 44,021,940 (GRCm39)	M517L	probably benign	Het
Adcy10	C	A	1: 165,391,854 (GRCm39)	L1345I	probably damaging	Het
Adgrv1	T	C	13: 81,715,609 (GRCm39)	I860V	probably benign	Het
Alcam	T	C	16: 52,097,257 (GRCm39)	D333G	probably damaging	Het
Amt	C	A	9: 108,177,032 (GRCm39)	F213L	possibly damaging	Het
Ascc3	A	G	10: 50,604,278 (GRCm39)	T1333A	probably damaging	Het
Asxl3	C	A	18: 22,655,148 (GRCm39)	L1053I	probably damaging	Het
Atxn10	T	C	15: 85,220,699 (GRCm39)	S12P	probably damaging	Het
AU021092	T	C	16: 5,030,017 (GRCm39)	I333V	probably benign	Het
Birc6	A	G	17: 74,886,486 (GRCm39)	I577V	probably benign	Het
Cadm2	A	T	16: 66,609,726 (GRCm39)	F132I	probably benign	Het
Casp3	T	A	8: 47,087,308 (GRCm39)	V85D	probably damaging	Het
Ccdc168	C	T	1: 44,096,367 (GRCm39)	C1577Y	probably benign	Het
Ccdc85a	A	T	11: 28,342,944 (GRCm39)		probably benign	Het
Cd22	T	C	7: 30,566,999 (GRCm39)	R760G	possibly damaging	Het
Cela3a	A	T	4: 137,135,441 (GRCm39)	W41R	probably damaging	Het
Cep164	A	G	9: 45,683,578 (GRCm39)		probably null	Het
Cntnap5b	A	G	1: 100,202,197 (GRCm39)	E348G	probably benign	Het
Ddx20	C	A	3: 105,591,626 (GRCm39)	K181N	probably benign	Het
Dnah14	G	C	1: 181,612,740 (GRCm39)	A3846P	possibly damaging	Het
Ern1	A	C	11: 106,294,365 (GRCm39)	I813S	probably damaging	Het
Fam181a	G	A	12: 103,282,773 (GRCm39)	G226D	probably damaging	Het
Fam186a	T	A	15: 99,844,357 (GRCm39)	D629V	unknown	Het
Gipr	T	A	7: 18,898,529 (GRCm39)	T26S	probably benign	Het
Gm3159	A	G	14: 4,398,530 (GRCm38)	R74G	possibly damaging	Het
Greb1l	G	A	18: 10,558,786 (GRCm39)	V1814I	probably benign	Het
Hacd1	A	T	2: 14,049,664 (GRCm39)	V98E	probably damaging	Het
Iars1	T	G	13: 49,875,637 (GRCm39)	F775V	probably damaging	Het
Il12rb2	G	A	6: 67,269,636 (GRCm39)	L726F	possibly damaging	Het
Itih4	T	C	14: 30,614,560 (GRCm39)	V474A	probably damaging	Het
Kmt2a	A	C	9: 44,731,319 (GRCm39)		probably benign	Het
Ktn1	T	A	14: 47,904,810 (GRCm39)	L196*	probably null	Het
Lipo4	A	G	19: 33,476,767 (GRCm39)	V327A	probably benign	Het
Lratd2	T	C	15: 60,694,934 (GRCm39)	T271A	probably benign	Het
Lrit1	G	C	14: 36,782,052 (GRCm39)	V242L	probably damaging	Het
Lrp4	C	A	2: 91,317,387 (GRCm39)	T837K	probably damaging	Het
Mad1l1	G	T	5: 140,051,572 (GRCm39)	F664L	probably damaging	Het
Mecr	A	G	4: 131,589,172 (GRCm39)	T247A	probably benign	Het
Msi1	G	A	5: 115,583,483 (GRCm39)	A228T	probably benign	Het
Mup5	T	A	4: 61,751,273 (GRCm39)	N125I	probably damaging	Het
Mybl2	C	T	2: 162,914,728 (GRCm39)	S282F	possibly damaging	Het
Myom2	G	A	8: 15,167,741 (GRCm39)	A1109T	probably null	Het
Nalcn	T	C	14: 123,744,966 (GRCm39)	D354G	probably damaging	Het
Nckap1l	T	C	15: 103,399,938 (GRCm39)	V1040A	possibly damaging	Het
Nlrp12	T	A	7: 3,271,160 (GRCm39)	D1051V	probably damaging	Het
Nudt7	A	G	8: 114,860,385 (GRCm39)	K16R	probably benign	Het
Or4b1	G	T	2: 89,979,494 (GRCm39)	Y285*	probably null	Het
Or8g29-ps1	A	G	9: 39,200,577 (GRCm39)	V203A	unknown	Het
Paqr3	A	T	5: 97,256,110 (GRCm39)	I88K	possibly damaging	Het
Parp9	A	G	16: 35,768,716 (GRCm39)	M299V	probably benign	Het
Pde4dip	A	T	3: 97,731,649 (GRCm39)		probably null	Het
Pex13	T	G	11: 23,605,628 (GRCm39)	M201L	probably benign	Het
Pfas	C	A	11: 68,884,709 (GRCm39)	V498L	probably benign	Het
Phka2	G	A	X: 159,316,044 (GRCm39)	V230I	probably damaging	Het
Plec	T	A	15: 76,070,414 (GRCm39)	D932V	probably damaging	Het
Qng1	C	A	13: 58,529,775 (GRCm39)	C279F	probably damaging	Het
Qsox2	C	T	2: 26,107,654 (GRCm39)	A445T	probably benign	Het
Rapgef1	C	A	2: 29,623,710 (GRCm39)	Q820K	possibly damaging	Het
Samd13	A	G	3: 146,368,424 (GRCm39)		probably null	Het
Samm50	G	T	15: 84,082,850 (GRCm39)	D104Y	probably damaging	Het
Sbk3	A	T	7: 4,970,522 (GRCm39)	F282L	probably benign	Het
Sfmbt1	C	T	14: 30,509,546 (GRCm39)	H342Y	probably benign	Het
Sgo2b	CCATCATCATCATCATCATCAT	CCATCATCATCATCATCAT	8: 64,384,489 (GRCm39)		probably benign	Het
Slc12a2	T	A	18: 58,043,344 (GRCm39)	L596*	probably null	Het
Spata31h1	A	T	10: 82,129,620 (GRCm39)	I1130K	probably benign	Het
St8sia3	T	C	18: 64,404,853 (GRCm39)	S377P	probably benign	Het
Stmnd1	T	G	13: 46,427,375 (GRCm39)	S28A	probably benign	Het
Syne3	A	T	12: 104,920,561 (GRCm39)	L458Q	probably damaging	Het
Synm	C	T	7: 67,385,848 (GRCm39)	V163I	probably benign	Het
Tnfrsf4	G	A	4: 156,100,625 (GRCm39)	V215I	probably benign	Het
Vars2	T	G	17: 35,977,967 (GRCm39)	K67Q	probably benign	Het
Vmn2r13	A	T	5: 109,304,753 (GRCm39)	Y559*	probably null	Het
Wdpcp	T	C	11: 21,671,154 (GRCm39)	I465T	possibly damaging	Het
Zwilch	A	C	9: 64,069,844 (GRCm39)		probably null	Het

Other mutations in Tbc1d23

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00540:Tbc1d23	APN	16	56,992,139 (GRCm39)	missense	probably damaging	1.00
IGL01063:Tbc1d23	APN	16	57,013,038 (GRCm39)	missense	probably benign	0.04
IGL01951:Tbc1d23	APN	16	57,007,048 (GRCm39)	splice site	probably benign
IGL01980:Tbc1d23	APN	16	57,009,615 (GRCm39)	splice site	probably benign
IGL02457:Tbc1d23	APN	16	56,990,754 (GRCm39)	missense	probably damaging	1.00
IGL02937:Tbc1d23	APN	16	57,004,778 (GRCm39)	missense	possibly damaging	0.94
IGL03226:Tbc1d23	APN	16	57,034,625 (GRCm39)	missense	probably damaging	1.00
R0386:Tbc1d23	UTSW	16	57,009,636 (GRCm39)	missense	probably damaging	1.00
R0472:Tbc1d23	UTSW	16	56,993,469 (GRCm39)	missense	possibly damaging	0.74
R0479:Tbc1d23	UTSW	16	56,992,177 (GRCm39)	missense	probably damaging	1.00
R0609:Tbc1d23	UTSW	16	56,993,469 (GRCm39)	missense	possibly damaging	0.74
R1124:Tbc1d23	UTSW	16	57,034,525 (GRCm39)	critical splice donor site	probably null
R1430:Tbc1d23	UTSW	16	57,034,573 (GRCm39)	missense	probably damaging	1.00
R1797:Tbc1d23	UTSW	16	56,993,463 (GRCm39)	missense	possibly damaging	0.90
R1978:Tbc1d23	UTSW	16	57,009,714 (GRCm39)	missense	probably benign
R4675:Tbc1d23	UTSW	16	57,003,325 (GRCm39)	missense	possibly damaging	0.72
R4756:Tbc1d23	UTSW	16	57,019,258 (GRCm39)	frame shift	probably null
R4781:Tbc1d23	UTSW	16	57,038,778 (GRCm39)	missense	possibly damaging	0.87
R4799:Tbc1d23	UTSW	16	57,012,991 (GRCm39)	missense	probably benign	0.01
R4895:Tbc1d23	UTSW	16	57,019,220 (GRCm39)	critical splice donor site	probably null
R5389:Tbc1d23	UTSW	16	57,019,291 (GRCm39)	missense	probably damaging	1.00
R5601:Tbc1d23	UTSW	16	57,018,672 (GRCm39)	missense	probably benign	0.02
R6041:Tbc1d23	UTSW	16	56,993,513 (GRCm39)	missense	probably benign	0.14
R6176:Tbc1d23	UTSW	16	56,992,152 (GRCm39)	missense	probably damaging	1.00
R6195:Tbc1d23	UTSW	16	57,051,713 (GRCm39)	missense	possibly damaging	0.56
R6228:Tbc1d23	UTSW	16	57,003,266 (GRCm39)	missense	probably damaging	0.98
R6232:Tbc1d23	UTSW	16	56,990,796 (GRCm39)	missense	probably benign	0.39
R6484:Tbc1d23	UTSW	16	56,998,379 (GRCm39)	missense	probably damaging	1.00
R6670:Tbc1d23	UTSW	16	57,034,580 (GRCm39)	missense	probably benign	0.00
R7218:Tbc1d23	UTSW	16	56,990,745 (GRCm39)	missense	probably damaging	1.00
R7601:Tbc1d23	UTSW	16	57,001,897 (GRCm39)	missense	probably benign	0.10
R7877:Tbc1d23	UTSW	16	56,993,488 (GRCm39)	missense	probably benign	0.35
R7886:Tbc1d23	UTSW	16	57,009,746 (GRCm39)	missense	possibly damaging	0.95
R8202:Tbc1d23	UTSW	16	57,011,917 (GRCm39)	missense	probably damaging	1.00
R8927:Tbc1d23	UTSW	16	56,992,152 (GRCm39)	missense	probably damaging	1.00
R8928:Tbc1d23	UTSW	16	56,992,152 (GRCm39)	missense	probably damaging	1.00
R9240:Tbc1d23	UTSW	16	57,032,748 (GRCm39)	missense	possibly damaging	0.89
R9405:Tbc1d23	UTSW	16	57,012,985 (GRCm39)	missense	possibly damaging	0.91
R9522:Tbc1d23	UTSW	16	57,019,107 (GRCm39)	missense	probably benign	0.37
R9772:Tbc1d23	UTSW	16	56,990,765 (GRCm39)	missense	probably damaging	1.00
Z1177:Tbc1d23	UTSW	16	57,003,338 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- TTCAGGTTTTACCAGCCCAGC -3'
(R):5'- AGTGGCTGTAAACCAGGTCTTC -3'

Sequencing Primer
(F):5'- GTTTTACCAGCCCAGCCTAGC -3'
(R):5'- TCTTCTGGAAGGTGTTAGAAGAGAGC -3'

Posted On

2018-11-28