Incidental Mutation 'R6960:Olfm4'
ID 541724
Institutional Source Beutler Lab
Gene Symbol Olfm4
Ensembl Gene ENSMUSG00000022026
Gene Name olfactomedin 4
Synonyms GC1, OlfD, pPD4, LOC380924, LOC239192, GW112
MMRRC Submission 045070-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.090) question?
Stock # R6960 (G1)
Quality Score 225.009
Status Validated
Chromosome 14
Chromosomal Location 80237742-80260581 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 80258754 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Serine at position 301 (L301S)
Ref Sequence ENSEMBL: ENSMUSP00000154285 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000088735] [ENSMUST00000228749]
AlphaFold Q3UZZ4
Predicted Effect probably damaging
Transcript: ENSMUST00000088735
AA Change: L334S

PolyPhen 2 Score 0.960 (Sensitivity: 0.78; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000086112
Gene: ENSMUSG00000022026
AA Change: L334S

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
low complexity region 32 43 N/A INTRINSIC
low complexity region 225 243 N/A INTRINSIC
OLF 274 532 8.53e-72 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000228749
AA Change: L301S

PolyPhen 2 Score 0.967 (Sensitivity: 0.77; Specificity: 0.95)
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.3%
  • 20x: 97.6%
Validation Efficiency 98% (50/51)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene was originally cloned from human myeloblasts and found to be selectively expressed in inflammed colonic epithelium. This gene encodes a member of the olfactomedin family. The encoded protein is an antiapoptotic factor that promotes tumor growth and is an extracellular matrix glycoprotein that facilitates cell adhesion. [provided by RefSeq, Mar 2011]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced colonization of the gastric mucosa by Helicobacter pylori but increased inflammatory response to H. pylori infection. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 51 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca1 T C 4: 53,072,924 (GRCm39) D1170G probably benign Het
Ak7 A T 12: 105,676,503 (GRCm39) T68S probably benign Het
Arhgap12 A T 18: 6,111,901 (GRCm39) N26K probably damaging Het
B3galt1 A T 2: 67,949,033 (GRCm39) E249D probably damaging Het
Catsper4 T A 4: 133,954,648 (GRCm39) M1L probably benign Het
Cc2d2b T C 19: 40,773,506 (GRCm39) V523A possibly damaging Het
Ccn4 C T 15: 66,791,047 (GRCm39) T283M probably benign Het
Cyp11a1 T C 9: 57,925,659 (GRCm39) F98S probably damaging Het
Cyp2d26 T C 15: 82,674,446 (GRCm39) S479G probably damaging Het
Dclre1a T G 19: 56,531,141 (GRCm39) Y735S probably damaging Het
Dio2 C T 12: 90,696,671 (GRCm39) G106R probably damaging Het
Efcab12 T C 6: 115,815,273 (GRCm39) probably benign Het
Ehhadh C A 16: 21,581,028 (GRCm39) V655L probably benign Het
Ercc2 G A 7: 19,127,615 (GRCm39) R379Q probably damaging Het
Fabp4 A G 3: 10,273,537 (GRCm39) V12A probably benign Het
Fbn1 T C 2: 125,223,980 (GRCm39) I590V probably benign Het
Grm8 C A 6: 27,981,281 (GRCm39) V210L probably damaging Het
Jakmip3 A G 7: 138,625,065 (GRCm39) D359G probably damaging Het
Lrit1 G C 14: 36,782,052 (GRCm39) V242L probably damaging Het
Ly75 A T 2: 60,136,749 (GRCm39) Y1493N probably benign Het
Lyst A G 13: 13,808,663 (GRCm39) N111S probably benign Het
Lyz2 G C 10: 117,114,607 (GRCm39) I107M possibly damaging Het
Mgat5 A T 1: 127,248,371 (GRCm39) D91V possibly damaging Het
Mical3 T A 6: 120,935,504 (GRCm39) D1674V probably damaging Het
Myom2 G A 8: 15,167,741 (GRCm39) A1109T probably null Het
Naa16 A G 14: 79,596,911 (GRCm39) Y358H possibly damaging Het
Nktr T A 9: 121,571,758 (GRCm39) H226Q probably damaging Het
Ocln T G 13: 100,635,380 (GRCm39) K503T possibly damaging Het
Or4f4b G A 2: 111,314,071 (GRCm39) V127I possibly damaging Het
Or6c74 T C 10: 129,869,972 (GRCm39) L159P probably benign Het
Paqr4 G A 17: 23,956,697 (GRCm39) A222V probably benign Het
Pcdhb13 A G 18: 37,576,509 (GRCm39) T296A probably benign Het
Phka2 G A X: 159,316,044 (GRCm39) V230I probably damaging Het
Pigg T C 5: 108,474,707 (GRCm39) V309A probably damaging Het
Ptger4 T C 15: 5,264,196 (GRCm39) R462G probably benign Het
Ptprc C T 1: 138,006,183 (GRCm39) probably null Het
Rabggta A C 14: 55,959,299 (GRCm39) probably null Het
Rnf25 A G 1: 74,634,403 (GRCm39) S207P possibly damaging Het
Rsf1 G GACGGCGGCC 7: 97,229,116 (GRCm39) probably benign Het
Rtf1 A G 2: 119,541,559 (GRCm39) Q264R probably damaging Het
Ryr2 A G 13: 11,816,129 (GRCm39) V619A probably benign Het
Serpinb6d A G 13: 33,855,181 (GRCm39) N285S probably benign Het
Slamf6 A G 1: 171,745,320 (GRCm39) M16V probably damaging Het
Slc22a23 A G 13: 34,528,140 (GRCm39) probably null Het
Slc23a2 T C 2: 131,933,173 (GRCm39) D95G probably damaging Het
Smc3 T C 19: 53,617,802 (GRCm39) Y600H probably damaging Het
Tarbp1 G A 8: 127,155,778 (GRCm39) T1320M possibly damaging Het
Tigd4 A T 3: 84,501,423 (GRCm39) K113N probably damaging Het
Tjp1 A T 7: 64,952,763 (GRCm39) F1444I possibly damaging Het
Tstd3 A T 4: 21,767,118 (GRCm39) M1K probably null Het
Zbtb46 T C 2: 181,065,217 (GRCm39) D311G probably damaging Het
Other mutations in Olfm4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00532:Olfm4 APN 14 80,258,583 (GRCm39) missense probably benign 0.12
IGL01108:Olfm4 APN 14 80,259,339 (GRCm39) missense probably benign 0.15
IGL01599:Olfm4 APN 14 80,258,750 (GRCm39) missense probably damaging 1.00
IGL01872:Olfm4 APN 14 80,259,368 (GRCm39) makesense probably null
IGL01928:Olfm4 APN 14 80,249,392 (GRCm39) missense possibly damaging 0.71
IGL02333:Olfm4 APN 14 80,259,210 (GRCm39) missense probably damaging 1.00
IGL02336:Olfm4 APN 14 80,243,761 (GRCm39) missense probably damaging 1.00
IGL02811:Olfm4 APN 14 80,259,113 (GRCm39) missense probably damaging 1.00
PIT4651001:Olfm4 UTSW 14 80,258,925 (GRCm39) missense probably benign 0.00
R1428:Olfm4 UTSW 14 80,258,843 (GRCm39) missense probably damaging 1.00
R1649:Olfm4 UTSW 14 80,249,422 (GRCm39) missense probably damaging 0.98
R2139:Olfm4 UTSW 14 80,251,755 (GRCm39) missense probably benign 0.00
R2270:Olfm4 UTSW 14 80,249,315 (GRCm39) missense probably damaging 0.96
R2401:Olfm4 UTSW 14 80,259,192 (GRCm39) missense probably damaging 1.00
R4527:Olfm4 UTSW 14 80,258,664 (GRCm39) missense probably benign 0.13
R4649:Olfm4 UTSW 14 80,258,747 (GRCm39) missense probably benign 0.00
R5232:Olfm4 UTSW 14 80,259,122 (GRCm39) missense probably damaging 1.00
R5512:Olfm4 UTSW 14 80,258,787 (GRCm39) missense probably benign 0.32
R6198:Olfm4 UTSW 14 80,237,813 (GRCm39) missense probably benign 0.18
R6642:Olfm4 UTSW 14 80,259,107 (GRCm39) missense probably damaging 1.00
R6828:Olfm4 UTSW 14 80,258,973 (GRCm39) missense probably damaging 1.00
R6916:Olfm4 UTSW 14 80,251,638 (GRCm39) missense probably damaging 0.97
R7329:Olfm4 UTSW 14 80,249,369 (GRCm39) missense possibly damaging 0.79
R7971:Olfm4 UTSW 14 80,259,240 (GRCm39) missense probably damaging 0.98
R8872:Olfm4 UTSW 14 80,258,943 (GRCm39) missense probably damaging 1.00
R9008:Olfm4 UTSW 14 80,255,607 (GRCm39) missense unknown
R9398:Olfm4 UTSW 14 80,249,249 (GRCm39) missense probably benign 0.12
R9599:Olfm4 UTSW 14 80,243,747 (GRCm39) missense probably damaging 1.00
R9600:Olfm4 UTSW 14 80,243,747 (GRCm39) missense probably damaging 1.00
R9784:Olfm4 UTSW 14 80,249,348 (GRCm39) missense probably damaging 0.99
Z1176:Olfm4 UTSW 14 80,258,659 (GRCm39) missense probably benign 0.39
Z1177:Olfm4 UTSW 14 80,237,892 (GRCm39) missense probably benign 0.40
Predicted Primers PCR Primer
(F):5'- ACATCAGCGCTCCTTCTGTG -3'
(R):5'- AGCAAGGTCAATGTCTTGCC -3'

Sequencing Primer
(F):5'- AGCGCTCCTTCTGTGATTCAG -3'
(R):5'- GCAAGGTCAATGTCTTGCCAATTC -3'
Posted On 2018-11-28