Mutagenetix > Incidental Mutation

Incidental Mutation 'R6970:Syde2'

542168

Institutional Source

Beutler Lab

Gene Symbol

Syde2

Ensembl Gene

ENSMUSG00000036863

Gene Name

synapse defective 1, Rho GTPase, homolog 2 (C. elegans)

Synonyms

C430017H16Rik

MMRRC Submission

045080-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.105) question?

Stock #

R6970 (G1)

Quality Score

188.009

Status

Not validated

Chromosome

Chromosomal Location

145693625-145727475 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 145694381 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 210 (T210A)

Ref Sequence

ENSEMBL: ENSMUSP00000041897 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039517] [ENSMUST00000200546] [ENSMUST00000212479]

AlphaFold

E9PUP1

Predicted Effect

probably benign
Transcript: ENSMUST00000039517
AA Change: T210A

PolyPhen 2 Score 0.146 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000041897
Gene: ENSMUSG00000036863
AA Change: T210A

Domain	Start	End	E-Value	Type
low complexity region	65	98	N/A	INTRINSIC
low complexity region	116	128	N/A	INTRINSIC
low complexity region	164	185	N/A	INTRINSIC
low complexity region	197	221	N/A	INTRINSIC
low complexity region	623	636	N/A	INTRINSIC
C2	802	902	1.1e0	SMART
RhoGAP	950	1149	1.23e-57	SMART
Blast:RhoGAP	1151	1299	2e-50	BLAST
low complexity region	1300	1311	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000200546

SMART Domains

Protein: ENSMUSP00000142954
Gene: ENSMUSG00000036863

Domain	Start	End	E-Value	Type
low complexity region	355	368	N/A	INTRINSIC
C2	534	634	7.2e-3	SMART
RhoGAP	682	881	7.3e-60	SMART
Blast:RhoGAP	883	1031	2e-50	BLAST
low complexity region	1032	1043	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000212479

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.2%
20x: 97.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acadsb	T	C	7: 131,036,044 (GRCm39)	Y285H	possibly damaging	Het
Adam17	A	G	12: 21,395,669 (GRCm39)	S285P	probably benign	Het
Adcy10	A	G	1: 165,384,485 (GRCm39)	N1082S	probably benign	Het
Ahdc1	T	A	4: 132,789,656 (GRCm39)	L299Q	possibly damaging	Het
Ambra1	T	A	2: 91,602,945 (GRCm39)		probably benign	Het
Arfgef1	T	C	1: 10,223,903 (GRCm39)	Q1465R	probably damaging	Het
Arfgef1	G	T	1: 10,223,904 (GRCm39)	Q1465K	probably damaging	Het
Atp8a1	A	G	5: 67,895,805 (GRCm39)	V543A	probably damaging	Het
BC034090	T	A	1: 155,117,185 (GRCm39)	D311V	probably damaging	Het
Blnk	G	T	19: 40,950,821 (GRCm39)	P110Q	probably damaging	Het
Cc2d2a	A	G	5: 43,875,927 (GRCm39)	E968G	probably damaging	Het
Ccdc14	A	T	16: 34,529,903 (GRCm39)	E394V	probably damaging	Het
Ccdc162	A	T	10: 41,491,954 (GRCm39)	H1086Q	probably benign	Het
Ccdc85b	T	A	19: 5,507,248 (GRCm39)	I60F	probably damaging	Het
Ceacam20	T	A	7: 19,723,902 (GRCm39)	L562Q	probably damaging	Het
Cntrl	T	C	2: 35,008,149 (GRCm39)	F188L	probably benign	Het
Cplane1	T	C	15: 8,217,032 (GRCm39)	V750A	probably benign	Het
Dclk1	A	T	3: 55,374,022 (GRCm39)		probably benign	Het
Ddx20	A	T	3: 105,587,674 (GRCm39)	L434H	probably damaging	Het
Ddx51	G	A	5: 110,804,728 (GRCm39)	V547M	probably damaging	Het
Dnah11	T	A	12: 118,072,679 (GRCm39)	Q1472L	probably benign	Het
Dnajb13	T	C	7: 100,156,629 (GRCm39)	E149G	probably damaging	Het
Efcab3	A	G	11: 104,667,182 (GRCm39)	E1422G	probably benign	Het
Eif1ad8	G	T	12: 87,563,388 (GRCm39)		probably benign	Het
Fat4	A	G	3: 39,035,924 (GRCm39)	N3192S	probably damaging	Het
Fat4	A	T	3: 39,050,120 (GRCm39)	D3994V	probably damaging	Het
Fcgr1	C	A	3: 96,191,936 (GRCm39)		probably null	Het
Gm12185	G	A	11: 48,798,739 (GRCm39)	R585*	probably null	Het
Gm32687	A	G	10: 81,715,304 (GRCm39)	H232R	probably benign	Het
Gm5431	G	T	11: 48,779,317 (GRCm39)	A535D	probably damaging	Het
Jarid2	C	T	13: 45,056,461 (GRCm39)	P556S	probably damaging	Het
Map3k4	C	A	17: 12,467,803 (GRCm39)	G1077V	probably damaging	Het
Mast4	C	T	13: 102,941,155 (GRCm39)	V301I	probably damaging	Het
Mlxip	A	G	5: 123,583,735 (GRCm39)	T433A	possibly damaging	Het
Ms4a20	A	G	19: 11,089,678 (GRCm39)		probably null	Het
Mus81	G	T	19: 5,535,554 (GRCm39)	H199Q	probably benign	Het
Mylk3	G	A	8: 86,085,892 (GRCm39)	T54M	probably damaging	Het
Nalcn	A	G	14: 123,551,506 (GRCm39)	F1034L	possibly damaging	Het
Nfatc1	A	C	18: 80,710,228 (GRCm39)	S513A	probably benign	Het
Ninj2	A	G	6: 120,175,092 (GRCm39)	I88V	possibly damaging	Het
Nomo1	C	T	7: 45,695,391 (GRCm39)	P277L	probably damaging	Het
Nup214	C	T	2: 31,941,810 (GRCm39)	S571L	probably damaging	Het
Or10g9b	T	A	9: 39,918,009 (GRCm39)	M79L	probably benign	Het
Or5b3	T	A	19: 13,388,792 (GRCm39)	N286K	probably damaging	Het
Or9a7	T	C	6: 40,521,590 (GRCm39)	S108G	probably benign	Het
Pcdh15	C	T	10: 74,338,519 (GRCm39)	P1005S	probably damaging	Het
Pkhd1l1	G	A	15: 44,375,070 (GRCm39)	A942T	possibly damaging	Het
Plagl1	T	C	10: 13,000,860 (GRCm39)	C34R	probably damaging	Het
Plekha2	T	C	8: 25,549,280 (GRCm39)	Q168R	probably benign	Het
Plekha6	G	A	1: 133,191,556 (GRCm39)	A146T	probably benign	Het
Plekhm3	T	G	1: 64,931,912 (GRCm39)	K564T	possibly damaging	Het
Plpp2	A	G	10: 79,366,380 (GRCm39)	V26A	possibly damaging	Het
Prdm10	T	G	9: 31,241,119 (GRCm39)	Y302*	probably null	Het
Prdm8	A	G	5: 98,332,471 (GRCm39)	E124G	probably damaging	Het
Prg4	T	G	1: 150,331,657 (GRCm39)		probably benign	Het
Qser1	A	G	2: 104,618,475 (GRCm39)	V779A	probably benign	Het
Rbm39	G	A	2: 156,009,504 (GRCm39)	R123C	probably damaging	Het
Ric1	C	T	19: 29,565,172 (GRCm39)	P640S	probably damaging	Het
Rpl14	G	A	9: 120,403,293 (GRCm39)		probably benign	Het
Rsl1d1	T	A	16: 11,011,558 (GRCm39)	D382V	probably benign	Het
Rubcn	G	T	16: 32,688,514 (GRCm39)		probably benign	Het
Sec16a	G	A	2: 26,320,498 (GRCm39)	R1361C	probably damaging	Het
Slc26a11	T	G	11: 119,247,798 (GRCm39)	V41G	probably damaging	Het
Slc41a2	A	G	10: 83,151,960 (GRCm39)	F172L	possibly damaging	Het
Slc4a4	A	C	5: 89,327,690 (GRCm39)	Y674S	probably damaging	Het
Spata31e3	A	T	13: 50,401,007 (GRCm39)	Y440N	possibly damaging	Het
Strc	A	C	2: 121,208,495 (GRCm39)	M292R	probably benign	Het
Tcf7l2	C	A	19: 55,743,480 (GRCm39)	A97E	probably benign	Het
Tenm3	C	T	8: 48,689,474 (GRCm39)	D2038N	probably damaging	Het
Tepsin	G	A	11: 119,986,190 (GRCm39)	T168M	probably damaging	Het
Tex15	A	T	8: 34,047,456 (GRCm39)	M178L	probably benign	Het
Tgfbr2	T	C	9: 115,939,119 (GRCm39)	N236S	probably damaging	Het
Tnrc18	A	G	5: 142,713,744 (GRCm39)	V2531A	probably damaging	Het
Ttn	T	G	2: 76,725,767 (GRCm39)		probably benign	Het
Tubgcp3	G	T	8: 12,687,000 (GRCm39)	D630E	probably damaging	Het
Ubr4	G	A	4: 139,133,839 (GRCm39)	W745*	probably null	Het
Vmn2r115	G	A	17: 23,564,989 (GRCm39)	G292D	probably benign	Het
Vmn2r38	T	A	7: 9,078,340 (GRCm39)	K681*	probably null	Het
Xrcc6	A	G	15: 81,915,375 (GRCm39)	K98E	probably benign	Het
Zfp423	A	G	8: 88,530,407 (GRCm39)	V13A	probably benign	Het
Zfp512b	A	G	2: 181,228,141 (GRCm39)	I5T	possibly damaging	Het
Zmynd8	C	T	2: 165,717,670 (GRCm39)	E14K	probably damaging	Het

Other mutations in Syde2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00331:Syde2	APN	3	145,720,096 (GRCm39)	missense	possibly damaging	0.76
IGL01624:Syde2	APN	3	145,712,790 (GRCm39)	missense	probably damaging	1.00
IGL02059:Syde2	APN	3	145,707,927 (GRCm39)	missense	possibly damaging	0.77
IGL02195:Syde2	APN	3	145,707,911 (GRCm39)	missense	probably damaging	1.00
IGL02498:Syde2	APN	3	145,704,444 (GRCm39)	missense	probably benign	0.08
IGL02609:Syde2	APN	3	145,704,275 (GRCm39)	missense	probably benign	0.00
IGL02721:Syde2	APN	3	145,707,759 (GRCm39)	missense	probably damaging	1.00
IGL02932:Syde2	APN	3	145,707,231 (GRCm39)	missense	possibly damaging	0.79
IGL02957:Syde2	APN	3	145,694,934 (GRCm39)	splice site	probably benign
R0062:Syde2	UTSW	3	145,704,508 (GRCm39)	missense	probably benign	0.00
R0062:Syde2	UTSW	3	145,704,508 (GRCm39)	missense	probably benign	0.00
R0413:Syde2	UTSW	3	145,712,887 (GRCm39)	missense	probably damaging	1.00
R0505:Syde2	UTSW	3	145,720,135 (GRCm39)	missense	possibly damaging	0.85
R0535:Syde2	UTSW	3	145,694,925 (GRCm39)	critical splice donor site	probably null
R0646:Syde2	UTSW	3	145,720,004 (GRCm39)	splice site	probably null
R1535:Syde2	UTSW	3	145,708,176 (GRCm39)	splice site	probably benign
R1914:Syde2	UTSW	3	145,720,071 (GRCm39)	nonsense	probably null
R1915:Syde2	UTSW	3	145,720,071 (GRCm39)	nonsense	probably null
R1997:Syde2	UTSW	3	145,704,746 (GRCm39)	missense	probably benign	0.08
R2012:Syde2	UTSW	3	145,694,163 (GRCm39)	missense	possibly damaging	0.88
R2112:Syde2	UTSW	3	145,704,241 (GRCm39)	missense	possibly damaging	0.52
R2220:Syde2	UTSW	3	145,707,713 (GRCm39)	missense	probably benign	0.07
R2990:Syde2	UTSW	3	145,707,252 (GRCm39)	missense	probably damaging	0.97
R4022:Syde2	UTSW	3	145,721,480 (GRCm39)	missense	probably benign	0.25
R5077:Syde2	UTSW	3	145,707,764 (GRCm39)	missense	probably damaging	1.00
R5084:Syde2	UTSW	3	145,707,163 (GRCm39)	nonsense	probably null
R5084:Syde2	UTSW	3	145,707,164 (GRCm39)	frame shift	probably null
R5086:Syde2	UTSW	3	145,707,163 (GRCm39)	nonsense	probably null
R5087:Syde2	UTSW	3	145,707,163 (GRCm39)	nonsense	probably null
R5087:Syde2	UTSW	3	145,712,881 (GRCm39)	missense	probably damaging	1.00
R5101:Syde2	UTSW	3	145,721,393 (GRCm39)	missense	probably damaging	1.00
R5211:Syde2	UTSW	3	145,707,093 (GRCm39)	missense	probably benign	0.01
R5842:Syde2	UTSW	3	145,704,775 (GRCm39)	missense	probably benign	0.00
R6025:Syde2	UTSW	3	145,712,896 (GRCm39)	splice site	probably null
R6352:Syde2	UTSW	3	145,704,229 (GRCm39)	nonsense	probably null
R6384:Syde2	UTSW	3	145,704,568 (GRCm39)	missense	probably damaging	1.00
R6769:Syde2	UTSW	3	145,704,803 (GRCm39)	missense	probably damaging	0.98
R6771:Syde2	UTSW	3	145,704,803 (GRCm39)	missense	probably damaging	0.98
R6988:Syde2	UTSW	3	145,725,564 (GRCm39)	missense	probably benign	0.31
R7067:Syde2	UTSW	3	145,694,019 (GRCm39)	missense	probably benign	0.00
R7146:Syde2	UTSW	3	145,712,870 (GRCm39)	nonsense	probably null
R7191:Syde2	UTSW	3	145,708,113 (GRCm39)	missense	probably benign	0.04
R7246:Syde2	UTSW	3	145,694,510 (GRCm39)	missense	probably benign	0.22
R7271:Syde2	UTSW	3	145,726,031 (GRCm39)	missense	possibly damaging	0.71
R7307:Syde2	UTSW	3	145,721,553 (GRCm39)	missense	probably damaging	1.00
R7875:Syde2	UTSW	3	145,726,020 (GRCm39)	missense	probably damaging	1.00
R7903:Syde2	UTSW	3	145,704,543 (GRCm39)	missense	probably damaging	1.00
R7918:Syde2	UTSW	3	145,708,170 (GRCm39)	critical splice donor site	probably null
R8016:Syde2	UTSW	3	145,707,727 (GRCm39)	missense	possibly damaging	0.82
R8185:Syde2	UTSW	3	145,694,667 (GRCm39)	missense	probably benign
R8328:Syde2	UTSW	3	145,721,496 (GRCm39)	missense	probably benign	0.31
R8913:Syde2	UTSW	3	145,708,148 (GRCm39)	missense	probably damaging	1.00
R9800:Syde2	UTSW	3	145,704,364 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- TTATCTGCTGATCCAGGCCATG -3'
(R):5'- CCCCACAGGATCCTTAAAGG -3'

Sequencing Primer
(F):5'- TGATCCAGGCCATGCACGAC -3'
(R):5'- ACGTAGCAGCCCTGTGG -3'

Posted On

2018-11-28