Incidental Mutation 'R6980:Rusc2'
ID 543750
Institutional Source Beutler Lab
Gene Symbol Rusc2
Ensembl Gene ENSMUSG00000035969
Gene Name RUN and SH3 domain containing 2
Synonyms
MMRRC Submission 045088-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.158) question?
Stock # R6980 (G1)
Quality Score 225.009
Status Not validated
Chromosome 4
Chromosomal Location 43381979-43427088 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to G at 43422846 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Methionine at position 994 (I994M)
Ref Sequence ENSEMBL: ENSMUSP00000095710 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000035645] [ENSMUST00000052829] [ENSMUST00000098106] [ENSMUST00000107928] [ENSMUST00000107929] [ENSMUST00000131668] [ENSMUST00000149221] [ENSMUST00000149676] [ENSMUST00000171134] [ENSMUST00000173682]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000035645
AA Change: I994M

PolyPhen 2 Score 0.351 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000038379
Gene: ENSMUSG00000035969
AA Change: I994M

DomainStartEndE-ValueType
low complexity region 39 47 N/A INTRINSIC
low complexity region 212 230 N/A INTRINSIC
low complexity region 253 265 N/A INTRINSIC
low complexity region 411 427 N/A INTRINSIC
low complexity region 435 448 N/A INTRINSIC
low complexity region 530 544 N/A INTRINSIC
low complexity region 600 617 N/A INTRINSIC
low complexity region 795 809 N/A INTRINSIC
RUN 1109 1177 3.66e-21 SMART
low complexity region 1235 1260 N/A INTRINSIC
low complexity region 1289 1324 N/A INTRINSIC
low complexity region 1330 1341 N/A INTRINSIC
SH3 1457 1512 7.4e-11 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000052829
SMART Domains Protein: ENSMUSP00000058980
Gene: ENSMUSG00000042788

DomainStartEndE-ValueType
Pfam:DUF2475 15 47 2.9e-12 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000098106
AA Change: I994M

PolyPhen 2 Score 0.351 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000095710
Gene: ENSMUSG00000035969
AA Change: I994M

DomainStartEndE-ValueType
low complexity region 39 47 N/A INTRINSIC
low complexity region 212 230 N/A INTRINSIC
low complexity region 253 265 N/A INTRINSIC
low complexity region 411 427 N/A INTRINSIC
low complexity region 435 448 N/A INTRINSIC
low complexity region 530 544 N/A INTRINSIC
low complexity region 600 617 N/A INTRINSIC
low complexity region 795 809 N/A INTRINSIC
RUN 1109 1177 3.66e-21 SMART
low complexity region 1235 1260 N/A INTRINSIC
low complexity region 1289 1324 N/A INTRINSIC
low complexity region 1330 1341 N/A INTRINSIC
SH3 1457 1512 7.4e-11 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000107928
SMART Domains Protein: ENSMUSP00000103561
Gene: ENSMUSG00000042788

DomainStartEndE-ValueType
Pfam:DUF2475 15 76 1.3e-20 PFAM
Pfam:DUF2475 212 251 6.9e-10 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000107929
SMART Domains Protein: ENSMUSP00000103562
Gene: ENSMUSG00000042788

DomainStartEndE-ValueType
Pfam:DUF2475 15 76 1.5e-20 PFAM
Pfam:DUF2475 232 271 7.7e-10 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000131668
AA Change: I994M

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)
SMART Domains Protein: ENSMUSP00000118528
Gene: ENSMUSG00000035969
AA Change: I994M

DomainStartEndE-ValueType
low complexity region 39 47 N/A INTRINSIC
low complexity region 212 230 N/A INTRINSIC
low complexity region 253 265 N/A INTRINSIC
low complexity region 411 427 N/A INTRINSIC
low complexity region 435 448 N/A INTRINSIC
low complexity region 530 544 N/A INTRINSIC
low complexity region 600 617 N/A INTRINSIC
low complexity region 795 809 N/A INTRINSIC
RUN 1109 1177 3.66e-21 SMART
low complexity region 1235 1260 N/A INTRINSIC
low complexity region 1289 1324 N/A INTRINSIC
low complexity region 1330 1341 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000149221
Predicted Effect probably benign
Transcript: ENSMUST00000149676
Predicted Effect probably benign
Transcript: ENSMUST00000155080
Predicted Effect probably benign
Transcript: ENSMUST00000171134
SMART Domains Protein: ENSMUSP00000127145
Gene: ENSMUSG00000042788

DomainStartEndE-ValueType
Pfam:DUF2475 15 76 7.2e-21 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000173682
SMART Domains Protein: ENSMUSP00000133715
Gene: ENSMUSG00000035969

DomainStartEndE-ValueType
low complexity region 39 47 N/A INTRINSIC
low complexity region 212 230 N/A INTRINSIC
low complexity region 253 265 N/A INTRINSIC
low complexity region 411 427 N/A INTRINSIC
low complexity region 435 448 N/A INTRINSIC
low complexity region 530 544 N/A INTRINSIC
low complexity region 685 703 N/A INTRINSIC
low complexity region 733 740 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.2%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a RUN and SH3 domain containing protein that interacts with Rab1b and Rab1-binding protein GM130. Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, Jun 2012]
Allele List at MGI
Other mutations in this stock
Total: 88 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca2 C A 2: 25,440,866 (GRCm38) R1189S possibly damaging Het
Abcf2 T C 5: 24,565,972 (GRCm38) Q594R probably benign Het
Abhd18 G A 3: 40,933,780 (GRCm38) S353N probably benign Het
Adrb1 G T 19: 56,723,614 (GRCm38) A415S probably benign Het
Art2b T C 7: 101,580,473 (GRCm38) N73S probably benign Het
BC028528 CTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTT CTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTT 3: 95,888,136 (GRCm38) probably benign Het
BC028528 ACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTC ACTGGTTCTGTGGTCTCTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTC 3: 95,888,139 (GRCm38) probably benign Het
BC028528 CACTGGTTCTGTGGT CACTGGTTCTGTGGTTACTGGTTCTGTGGT 3: 95,888,168 (GRCm38) probably benign Het
Cacna1a A G 8: 84,612,285 (GRCm38) M1753V possibly damaging Het
Cbx8 A T 11: 119,039,461 (GRCm38) I102N possibly damaging Het
Ccdc178 T A 18: 22,105,563 (GRCm38) E332D probably benign Het
Cfap74 G A 4: 155,466,352 (GRCm38) probably benign Het
Chat A T 14: 32,424,154 (GRCm38) M354K probably benign Het
Cmas A G 6: 142,756,800 (GRCm38) T10A probably damaging Het
Cyb561d1 A T 3: 108,200,159 (GRCm38) L51H probably benign Het
D030056L22Rik A T 19: 18,717,265 (GRCm38) N128I probably damaging Het
D130043K22Rik G T 13: 24,864,781 (GRCm38) A423S probably damaging Het
Dnah14 T C 1: 181,648,230 (GRCm38) I1349T probably benign Het
Dnajb3 T G 1: 88,205,014 (GRCm38) D222A probably damaging Het
Dtx1 T C 5: 120,681,357 (GRCm38) E592G probably damaging Het
Dzank1 C T 2: 144,490,136 (GRCm38) G427R possibly damaging Het
E130308A19Rik A C 4: 59,719,991 (GRCm38) K508Q probably damaging Het
Eif4e1b T A 13: 54,784,103 (GRCm38) probably null Het
Ell2 A G 13: 75,756,376 (GRCm38) M159V probably null Het
Eml4 G A 17: 83,451,017 (GRCm38) V377I probably benign Het
Fryl A T 5: 73,050,430 (GRCm38) S2466T probably benign Het
Gfpt1 C A 6: 87,077,089 (GRCm38) T426K probably damaging Het
Gm28710 T A 5: 16,826,946 (GRCm38) V533D possibly damaging Het
Gm49355 T C 14: 12,307,173 (GRCm38) probably benign Het
Gm5114 T C 7: 39,409,200 (GRCm38) I332V probably benign Het
Gpr15 T A 16: 58,718,742 (GRCm38) probably benign Het
Gpr179 T C 11: 97,334,858 (GRCm38) E2157G probably benign Het
Gramd4 A G 15: 86,131,969 (GRCm38) N482S probably benign Het
Hfm1 A T 5: 106,880,477 (GRCm38) I829K probably benign Het
Hydin A T 8: 110,413,284 (GRCm38) E728D possibly damaging Het
Ifngr2 T A 16: 91,560,007 (GRCm38) V143E probably damaging Het
Ift172 T C 5: 31,257,386 (GRCm38) D1390G probably benign Het
Kdf1 A T 4: 133,528,827 (GRCm38) D285V probably damaging Het
Mast4 C T 13: 102,804,647 (GRCm38) V301I probably damaging Het
Mdn1 G A 4: 32,726,942 (GRCm38) probably null Het
Megf11 A G 9: 64,705,850 (GRCm38) E1016G probably damaging Het
Mixl1 G A 1: 180,696,888 (GRCm38) A42V possibly damaging Het
Mpp2 A G 11: 102,059,328 (GRCm38) W567R probably damaging Het
Mrgpra6 A G 7: 47,188,949 (GRCm38) L136P probably damaging Het
Mroh7 T A 4: 106,700,237 (GRCm38) I759L probably benign Het
Nrxn2 A G 19: 6,450,579 (GRCm38) D277G probably benign Het
Nup210l A T 3: 90,119,927 (GRCm38) K205N probably benign Het
Olfr1040 A T 2: 86,146,337 (GRCm38) Y132* probably null Het
Olfr1284 A G 2: 111,379,275 (GRCm38) I92V possibly damaging Het
Olfr475-ps1 A G 2: 88,623,595 (GRCm38) *97W probably null Het
Olfr603 T C 7: 103,383,096 (GRCm38) E302G probably benign Het
Oxnad1 C T 14: 32,085,619 (GRCm38) probably benign Het
Pamr1 C T 2: 102,642,204 (GRCm38) T616I probably benign Het
Pcdhgb5 C T 18: 37,733,539 (GRCm38) H796Y possibly damaging Het
Pdlim7 G T 13: 55,508,228 (GRCm38) D126E probably benign Het
Pfdn2 C T 1: 171,357,897 (GRCm38) probably benign Het
Piezo2 T A 18: 63,082,961 (GRCm38) probably null Het
Pms2 A T 5: 143,912,024 (GRCm38) I43L probably benign Het
Prex2 T A 1: 11,162,263 (GRCm38) S851R probably benign Het
Ptpn4 T A 1: 119,743,421 (GRCm38) E202D possibly damaging Het
Rnf40 T A 7: 127,594,677 (GRCm38) V455E probably damaging Het
Rp1l1 A G 14: 64,028,720 (GRCm38) N585S probably benign Het
Rrp12 A G 19: 41,890,143 (GRCm38) S188P probably damaging Het
Rsbn1l T A 5: 20,896,484 (GRCm38) H686L probably benign Het
Runx2 C T 17: 44,735,316 (GRCm38) V107I possibly damaging Het
Ryr1 T A 7: 29,109,387 (GRCm38) D420V probably benign Het
Sash1 T C 10: 8,729,848 (GRCm38) Q926R probably benign Het
Scgb3a2 T A 18: 43,764,434 (GRCm38) I6N probably damaging Het
Sdc3 T A 4: 130,816,922 (GRCm38) probably benign Het
Sik2 A G 9: 50,897,455 (GRCm38) V658A probably benign Het
Slc25a39 A G 11: 102,405,775 (GRCm38) V81A probably damaging Het
Snai2 T A 16: 14,708,249 (GRCm38) S255T possibly damaging Het
Sorbs1 A T 19: 40,327,616 (GRCm38) Y371* probably null Het
Spata31d1b A T 13: 59,715,422 (GRCm38) H128L probably benign Het
Spdl1 A T 11: 34,830,879 (GRCm38) M1K probably null Het
Tgm3 T A 2: 130,026,777 (GRCm38) N211K probably benign Het
Tmem116 T C 5: 121,467,987 (GRCm38) probably null Het
Tmem132e T A 11: 82,438,386 (GRCm38) probably null Het
Tmem53 T C 4: 117,268,508 (GRCm38) C251R probably damaging Het
Trcg1 A C 9: 57,245,573 (GRCm38) D551A probably damaging Het
Trp63 T A 16: 25,802,093 (GRCm38) F12I probably benign Het
Ttn C T 2: 76,879,057 (GRCm38) probably null Het
Tubgcp4 T C 2: 121,195,465 (GRCm38) V596A probably benign Het
Ugt2a3 A C 5: 87,325,632 (GRCm38) H475Q probably damaging Het
Unc79 G A 12: 103,059,500 (GRCm38) R382K probably damaging Het
Vmn2r58 T C 7: 41,864,238 (GRCm38) H327R possibly damaging Het
Vmn2r7 G A 3: 64,716,566 (GRCm38) T111I possibly damaging Het
Zfp318 T A 17: 46,397,212 (GRCm38) Y399N probably damaging Het
Other mutations in Rusc2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01358:Rusc2 APN 4 43,426,116 (GRCm38) missense probably damaging 0.97
IGL01474:Rusc2 APN 4 43,416,434 (GRCm38) missense probably damaging 0.98
IGL01541:Rusc2 APN 4 43,415,840 (GRCm38) missense probably benign 0.08
IGL01628:Rusc2 APN 4 43,425,729 (GRCm38) missense probably damaging 1.00
IGL01969:Rusc2 APN 4 43,415,738 (GRCm38) missense probably benign 0.02
IGL02030:Rusc2 APN 4 43,416,095 (GRCm38) missense possibly damaging 0.86
IGL02079:Rusc2 APN 4 43,425,668 (GRCm38) missense probably benign
IGL02115:Rusc2 APN 4 43,426,136 (GRCm38) splice site probably benign
IGL02122:Rusc2 APN 4 43,421,685 (GRCm38) missense possibly damaging 0.67
IGL02350:Rusc2 APN 4 43,425,351 (GRCm38) missense possibly damaging 0.86
IGL02357:Rusc2 APN 4 43,425,351 (GRCm38) missense possibly damaging 0.86
IGL02437:Rusc2 APN 4 43,415,545 (GRCm38) missense probably damaging 1.00
IGL02930:Rusc2 APN 4 43,416,376 (GRCm38) missense probably damaging 0.99
IGL03154:Rusc2 APN 4 43,425,806 (GRCm38) missense probably benign 0.00
P0026:Rusc2 UTSW 4 43,415,840 (GRCm38) missense possibly damaging 0.93
R0036:Rusc2 UTSW 4 43,424,009 (GRCm38) missense probably damaging 1.00
R0068:Rusc2 UTSW 4 43,424,100 (GRCm38) splice site probably benign
R0068:Rusc2 UTSW 4 43,424,100 (GRCm38) splice site probably benign
R0114:Rusc2 UTSW 4 43,422,055 (GRCm38) missense probably damaging 1.00
R0255:Rusc2 UTSW 4 43,423,954 (GRCm38) missense probably damaging 1.00
R0471:Rusc2 UTSW 4 43,425,486 (GRCm38) missense probably damaging 0.99
R1381:Rusc2 UTSW 4 43,416,137 (GRCm38) missense probably damaging 1.00
R1413:Rusc2 UTSW 4 43,416,568 (GRCm38) missense probably benign 0.00
R1416:Rusc2 UTSW 4 43,421,617 (GRCm38) missense possibly damaging 0.86
R1731:Rusc2 UTSW 4 43,426,046 (GRCm38) missense probably benign
R1864:Rusc2 UTSW 4 43,421,719 (GRCm38) missense possibly damaging 0.49
R1897:Rusc2 UTSW 4 43,421,749 (GRCm38) missense probably damaging 1.00
R2010:Rusc2 UTSW 4 43,415,212 (GRCm38) missense probably benign 0.06
R2212:Rusc2 UTSW 4 43,415,935 (GRCm38) missense probably damaging 1.00
R2275:Rusc2 UTSW 4 43,416,260 (GRCm38) missense probably damaging 1.00
R2885:Rusc2 UTSW 4 43,415,456 (GRCm38) missense probably benign 0.28
R2886:Rusc2 UTSW 4 43,415,456 (GRCm38) missense probably benign 0.28
R3412:Rusc2 UTSW 4 43,415,935 (GRCm38) missense probably damaging 1.00
R3413:Rusc2 UTSW 4 43,415,935 (GRCm38) missense probably damaging 1.00
R3414:Rusc2 UTSW 4 43,415,935 (GRCm38) missense probably damaging 1.00
R3852:Rusc2 UTSW 4 43,416,424 (GRCm38) missense probably benign 0.45
R4135:Rusc2 UTSW 4 43,425,563 (GRCm38) missense possibly damaging 0.49
R4272:Rusc2 UTSW 4 43,415,533 (GRCm38) missense probably damaging 1.00
R4574:Rusc2 UTSW 4 43,416,080 (GRCm38) missense probably damaging 0.99
R4888:Rusc2 UTSW 4 43,423,942 (GRCm38) missense probably damaging 1.00
R5010:Rusc2 UTSW 4 43,415,926 (GRCm38) missense probably damaging 1.00
R5071:Rusc2 UTSW 4 43,415,240 (GRCm38) missense probably benign 0.05
R5131:Rusc2 UTSW 4 43,414,948 (GRCm38) missense probably benign 0.03
R5177:Rusc2 UTSW 4 43,421,805 (GRCm38) splice site probably null
R5540:Rusc2 UTSW 4 43,423,975 (GRCm38) missense probably damaging 1.00
R5561:Rusc2 UTSW 4 43,415,932 (GRCm38) nonsense probably null
R5628:Rusc2 UTSW 4 43,425,348 (GRCm38) missense probably damaging 1.00
R5645:Rusc2 UTSW 4 43,425,758 (GRCm38) missense probably benign 0.06
R6129:Rusc2 UTSW 4 43,424,271 (GRCm38) missense probably damaging 1.00
R6362:Rusc2 UTSW 4 43,416,416 (GRCm38) missense probably benign 0.30
R6633:Rusc2 UTSW 4 43,414,852 (GRCm38) missense probably damaging 0.99
R7491:Rusc2 UTSW 4 43,426,528 (GRCm38) missense probably damaging 1.00
R7641:Rusc2 UTSW 4 43,425,335 (GRCm38) missense possibly damaging 0.84
R7698:Rusc2 UTSW 4 43,414,900 (GRCm38) nonsense probably null
R7710:Rusc2 UTSW 4 43,416,119 (GRCm38) missense probably benign 0.07
R8052:Rusc2 UTSW 4 43,421,851 (GRCm38) missense probably benign
R8061:Rusc2 UTSW 4 43,422,492 (GRCm38) missense probably damaging 1.00
R8127:Rusc2 UTSW 4 43,423,747 (GRCm38) missense possibly damaging 0.54
R8319:Rusc2 UTSW 4 43,425,378 (GRCm38) missense probably damaging 1.00
R8355:Rusc2 UTSW 4 43,422,846 (GRCm38) missense probably benign 0.35
R8397:Rusc2 UTSW 4 43,424,206 (GRCm38) missense possibly damaging 0.95
R8455:Rusc2 UTSW 4 43,422,846 (GRCm38) missense probably benign 0.35
R8553:Rusc2 UTSW 4 43,416,508 (GRCm38) missense probably benign 0.05
R8725:Rusc2 UTSW 4 43,401,351 (GRCm38) intron probably benign
R8725:Rusc2 UTSW 4 43,415,396 (GRCm38) missense probably damaging 0.99
R8727:Rusc2 UTSW 4 43,401,351 (GRCm38) intron probably benign
R8834:Rusc2 UTSW 4 43,416,431 (GRCm38) missense possibly damaging 0.94
R9295:Rusc2 UTSW 4 43,416,382 (GRCm38) missense probably damaging 0.98
R9483:Rusc2 UTSW 4 43,415,897 (GRCm38) missense probably damaging 0.97
R9666:Rusc2 UTSW 4 43,416,262 (GRCm38) missense probably benign 0.21
R9705:Rusc2 UTSW 4 43,424,936 (GRCm38) missense probably benign 0.00
X0025:Rusc2 UTSW 4 43,422,226 (GRCm38) missense probably benign 0.00
X0066:Rusc2 UTSW 4 43,422,204 (GRCm38) nonsense probably null
Predicted Primers PCR Primer
(F):5'- TGGTTGTACTCAGAGCAAGCTG -3'
(R):5'- GATACGTGGCCCTCATTCACTC -3'

Sequencing Primer
(F):5'- AGCTGAGAAGGGCCTGGC -3'
(R):5'- TGGCCCTCATTCACTCAGACAC -3'
Posted On 2019-05-13