Mutagenetix > Incidental Mutation

Incidental Mutation 'R6993:Lrrc27'

543972

Institutional Source

Beutler Lab

Gene Symbol

Lrrc27

Ensembl Gene

ENSMUSG00000015980

Gene Name

leucine rich repeat containing 27

Synonyms

2310044E02Rik, 1700071K18Rik

MMRRC Submission

045099-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.049) question?

Stock #

R6993 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

138792904-138822895 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 138822540 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Methionine at position 477 (K477M)

Ref Sequence

ENSEMBL: ENSMUSP00000016124 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000016124]

AlphaFold

Q80YS5

Predicted Effect

probably damaging
Transcript: ENSMUST00000016124
AA Change: K477M

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000016124
Gene: ENSMUSG00000015980
AA Change: K477M

Domain	Start	End	E-Value	Type
low complexity region	8	32	N/A	INTRINSIC
LRR_TYP	75	98	1.03e-2	SMART
LRR_TYP	99	122	3.69e-4	SMART
LRR	123	145	7.38e1	SMART
low complexity region	271	283	N/A	INTRINSIC
coiled coil region	336	370	N/A	INTRINSIC
coiled coil region	463	491	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

99% (66/67)

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700011L22Rik	T	C	8: 79,975,053 (GRCm39)	E10G	possibly damaging	Het
Akap9	A	G	5: 4,115,866 (GRCm39)	I3429V	possibly damaging	Het
Braf	T	A	6: 39,620,097 (GRCm39)	I441F	probably damaging	Het
C5ar1	A	T	7: 15,982,837 (GRCm39)	V61E	probably damaging	Het
Camk2a	C	A	18: 61,076,247 (GRCm39)		probably benign	Het
Cd163	A	G	6: 124,294,673 (GRCm39)	Y579C	probably damaging	Het
Celf1	T	C	2: 90,840,821 (GRCm39)	Y363H	probably damaging	Het
Cntn3	T	C	6: 102,255,365 (GRCm39)	T178A	probably damaging	Het
Cryab	C	T	9: 50,664,748 (GRCm39)	P58S	probably benign	Het
Ctsf	G	T	19: 4,908,511 (GRCm39)	R290L	probably benign	Het
Ctsw	T	A	19: 5,515,865 (GRCm39)	I258F	probably damaging	Het
Dnah7b	T	C	1: 46,234,299 (GRCm39)		probably null	Het
Drg1	TCATCTTCCA	TCA	11: 3,200,294 (GRCm39)		probably null	Het
Etfb	A	G	7: 43,105,978 (GRCm39)	T172A	possibly damaging	Het
Etfdh	A	G	3: 79,519,338 (GRCm39)	Y272H	probably benign	Het
Ewsr1	C	T	11: 5,021,573 (GRCm39)	R454Q	probably benign	Het
F2rl2	T	A	13: 95,837,642 (GRCm39)	I229N	probably damaging	Het
Fam162a	A	T	16: 35,870,215 (GRCm39)	I88N	probably damaging	Het
Fastkd5	A	G	2: 130,458,459 (GRCm39)	S44P	probably benign	Het
Fat3	T	G	9: 15,830,517 (GRCm39)	S4326R	probably damaging	Het
Fbf1	T	C	11: 116,043,610 (GRCm39)	K400E	probably benign	Het
Fndc7	A	G	3: 108,783,907 (GRCm39)	V234A	probably benign	Het
Gfi1	T	A	5: 107,865,634 (GRCm39)	H481L	probably damaging	Het
Gm5591	T	A	7: 38,218,647 (GRCm39)	H742L	probably benign	Het
Golm1	ACTTCTTCT	ACTTCT	13: 59,797,390 (GRCm39)		probably benign	Het
H2-DMb1	A	C	17: 34,376,324 (GRCm39)	T148P	possibly damaging	Het
H2-T3	A	G	17: 36,497,962 (GRCm39)	L317P	probably damaging	Het
Hes3	T	C	4: 152,371,380 (GRCm39)	T190A	probably benign	Het
Hivep1	C	T	13: 42,312,190 (GRCm39)	L1477F	possibly damaging	Het
Insr	C	T	8: 3,308,752 (GRCm39)	G95S	probably damaging	Het
Irf9	A	G	14: 55,846,414 (GRCm39)	I394V	probably benign	Het
Kat2b	T	C	17: 53,945,550 (GRCm39)	L323P	probably damaging	Het
Kdr	T	C	5: 76,133,071 (GRCm39)	D69G	probably benign	Het
Krt1c	C	T	15: 101,724,395 (GRCm39)	E290K	probably damaging	Het
Krtap4-6	G	T	11: 99,556,545 (GRCm39)	R61S	unknown	Het
Ldc1	A	G	4: 130,112,106 (GRCm39)	L192P	probably damaging	Het
Lvrn	T	C	18: 47,015,365 (GRCm39)	V579A	probably benign	Het
Malrd1	A	T	2: 16,155,602 (GRCm39)	I2004L	unknown	Het
Mast4	A	T	13: 102,872,482 (GRCm39)	N2103K	probably benign	Het
Mast4	C	T	13: 102,941,155 (GRCm39)	V301I	probably damaging	Het
Myo18a	T	A	11: 77,749,900 (GRCm39)		probably benign	Het
Or10d5	T	A	9: 39,861,933 (GRCm39)	M45L	probably benign	Het
Or52ab2	G	T	7: 102,969,998 (GRCm39)		probably benign	Het
Pcdhga10	A	G	18: 37,882,309 (GRCm39)	Y690C	probably damaging	Het
Pdcd2	A	G	17: 15,747,343 (GRCm39)	Y65H	probably damaging	Het
Ppp1r12a	A	G	10: 108,076,698 (GRCm39)	E309G	probably benign	Het
Psmb8	A	G	17: 34,418,617 (GRCm39)	D123G	probably damaging	Het
Ptcd3	A	T	6: 71,862,299 (GRCm39)	W513R	probably damaging	Het
Ptx4	G	A	17: 25,343,898 (GRCm39)	V383I	possibly damaging	Het
Ric1	T	C	19: 29,564,013 (GRCm39)	L589S	probably damaging	Het
Rmnd5b	A	G	11: 51,515,427 (GRCm39)		probably benign	Het
Sec16a	A	T	2: 26,313,586 (GRCm39)	S1925T	probably damaging	Het
Slc16a11	T	A	11: 70,106,842 (GRCm39)	M360K	possibly damaging	Het
Slc19a2	T	A	1: 164,088,391 (GRCm39)	F79I	probably benign	Het
Slc2a6	G	T	2: 26,917,255 (GRCm39)	S45R	probably damaging	Het
Slco1a7	G	A	6: 141,711,468 (GRCm39)	T81I	possibly damaging	Het
Sppl3	T	A	5: 115,220,349 (GRCm39)	M87K	probably damaging	Het
Tbcel	A	T	9: 42,327,413 (GRCm39)	L330*	probably null	Het
Tbx5	A	T	5: 120,009,454 (GRCm39)	Y321F	possibly damaging	Het
Tenm3	C	T	8: 48,689,474 (GRCm39)	D2038N	probably damaging	Het
Tesk1	A	G	4: 43,447,006 (GRCm39)	T465A	probably benign	Het
Unc45a	A	T	7: 79,975,403 (GRCm39)	Y934N	probably damaging	Het
Unc80	A	T	1: 66,588,952 (GRCm39)	Q1039L	possibly damaging	Het
Vmn2r112	T	C	17: 22,822,195 (GRCm39)	L291P	probably benign	Het
Wwc2	A	T	8: 48,300,500 (GRCm39)	F988I	unknown	Het
Zfp947	G	A	17: 22,364,961 (GRCm39)	P238S	probably benign	Het

Other mutations in Lrrc27

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01668:Lrrc27	APN	7	138,807,827 (GRCm39)	intron	probably benign
IGL02095:Lrrc27	APN	7	138,810,169 (GRCm39)	missense	probably benign	0.04
IGL02489:Lrrc27	APN	7	138,805,977 (GRCm39)	missense	probably benign	0.01
IGL03080:Lrrc27	APN	7	138,810,153 (GRCm39)	missense	probably benign	0.03
R0372:Lrrc27	UTSW	7	138,806,103 (GRCm39)	missense	probably benign	0.17
R1466:Lrrc27	UTSW	7	138,810,224 (GRCm39)	unclassified	probably benign
R2401:Lrrc27	UTSW	7	138,803,529 (GRCm39)	missense	probably damaging	1.00
R2876:Lrrc27	UTSW	7	138,808,600 (GRCm39)	intron	probably benign
R3113:Lrrc27	UTSW	7	138,798,223 (GRCm39)	missense	probably damaging	1.00
R4214:Lrrc27	UTSW	7	138,803,609 (GRCm39)	missense	probably damaging	1.00
R4707:Lrrc27	UTSW	7	138,822,614 (GRCm39)	missense	probably benign	0.02
R4784:Lrrc27	UTSW	7	138,822,614 (GRCm39)	missense	probably benign	0.02
R5070:Lrrc27	UTSW	7	138,794,715 (GRCm39)	missense	probably damaging	0.99
R5855:Lrrc27	UTSW	7	138,798,251 (GRCm39)	unclassified	probably benign
R6408:Lrrc27	UTSW	7	138,798,184 (GRCm39)	missense	probably benign	0.14
R7332:Lrrc27	UTSW	7	138,822,661 (GRCm39)	missense	probably damaging	1.00
R7350:Lrrc27	UTSW	7	138,806,022 (GRCm39)	missense	probably benign	0.01
R7460:Lrrc27	UTSW	7	138,803,574 (GRCm39)	missense	probably damaging	1.00
R7502:Lrrc27	UTSW	7	138,794,748 (GRCm39)	missense	probably benign
R8020:Lrrc27	UTSW	7	138,816,793 (GRCm39)	missense	probably damaging	1.00
R8071:Lrrc27	UTSW	7	138,816,902 (GRCm39)	missense	probably benign	0.01
R8518:Lrrc27	UTSW	7	138,808,690 (GRCm39)	missense	probably benign	0.01
R8728:Lrrc27	UTSW	7	138,822,555 (GRCm39)	missense	probably damaging	1.00
R8734:Lrrc27	UTSW	7	138,796,515 (GRCm39)	unclassified	probably benign
R9141:Lrrc27	UTSW	7	138,807,861 (GRCm39)	missense	probably benign	0.03
R9355:Lrrc27	UTSW	7	138,822,648 (GRCm39)	missense	probably damaging	0.98
R9387:Lrrc27	UTSW	7	138,807,837 (GRCm39)	nonsense	probably null
R9627:Lrrc27	UTSW	7	138,808,582 (GRCm39)	intron	probably benign
R9742:Lrrc27	UTSW	7	138,806,229 (GRCm39)	missense	probably benign	0.39
R9779:Lrrc27	UTSW	7	138,816,886 (GRCm39)	missense	possibly damaging	0.95
R9800:Lrrc27	UTSW	7	138,807,913 (GRCm39)	missense	probably benign	0.16
RF018:Lrrc27	UTSW	7	138,806,016 (GRCm39)	missense	probably benign	0.03
X0065:Lrrc27	UTSW	7	138,810,162 (GRCm39)	missense	probably benign	0.00
X0065:Lrrc27	UTSW	7	138,810,161 (GRCm39)	missense	probably benign	0.00
Z1176:Lrrc27	UTSW	7	138,822,636 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACAAGATTGCTAACTCTGTGGAAAG -3'
(R):5'- TACTTGTCACTCCTGCTGACAG -3'

Sequencing Primer
(F):5'- AGAACTACTAGATGTCCAGGTTGTG -3'
(R):5'- TGACAGCGCTGCCTTCCTAG -3'

Posted On

2019-05-13