Mutagenetix > Incidental Mutation

Incidental Mutation 'R6994:Cmklr1'

544035

Institutional Source

Beutler Lab

Gene Symbol

Cmklr1

Ensembl Gene

ENSMUSG00000042190

Gene Name

chemerin chemokine-like receptor 1

Synonyms

ChemR23, Gpcr27

MMRRC Submission

045100-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.215) question?

Stock #

R6994 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

113750415-113788487 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 113752983 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 6 (Y6C)

Ref Sequence

ENSEMBL: ENSMUSP00000121765 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047936] [ENSMUST00000132065] [ENSMUST00000142854]

AlphaFold

P97468

Predicted Effect

probably damaging
Transcript: ENSMUST00000047936
AA Change: Y6C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000036316
Gene: ENSMUSG00000042190
AA Change: Y6C

Domain	Start	End	E-Value	Type
Pfam:7tm_1	55	314	2.6e-41	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000132065
AA Change: Y6C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000121765
Gene: ENSMUSG00000042190
AA Change: Y6C

Domain	Start	End	E-Value	Type
Pfam:7tm_1	55	301	5e-46	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000142854

Meta Mutation Damage Score

0.4139

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

96% (82/85)

MGI Phenotype

PHENOTYPE: Homozygous null mice have defects in immunomodulation of monocyte and neutriphils by chemerin [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadacl4	T	G	4: 144,349,849 (GRCm39)	W369G	probably damaging	Het
Abhd16b	C	T	2: 181,135,461 (GRCm39)	T121M	possibly damaging	Het
Adam5	A	T	8: 25,276,262 (GRCm39)	C468*	probably null	Het
Aim2	C	T	1: 173,283,152 (GRCm39)	A78V	possibly damaging	Het
Alg9	G	A	9: 50,703,422 (GRCm39)	W254*	probably null	Het
Ankrd55	G	C	13: 112,504,834 (GRCm39)	E499Q	probably benign	Het
Atp6v0a2	T	C	5: 124,791,209 (GRCm39)	F546S	probably damaging	Het
Bean1	CT	C	8: 104,908,664 (GRCm39)		probably null	Het
Bpi	A	T	2: 158,100,164 (GRCm39)		probably benign	Het
Bves	A	G	10: 45,215,514 (GRCm39)	H63R	probably benign	Het
Ccdc183	T	C	2: 25,507,057 (GRCm39)	M45V	probably benign	Het
Cfhr4	T	A	1: 139,664,668 (GRCm39)	I464L	possibly damaging	Het
Colgalt1	C	T	8: 72,076,165 (GRCm39)	R539C	probably damaging	Het
Ctsm	T	A	13: 61,687,698 (GRCm39)	E53D	probably damaging	Het
Cyp2a22	A	G	7: 26,638,606 (GRCm39)		probably null	Het
Ddx10	A	G	9: 53,115,411 (GRCm39)	V641A	probably damaging	Het
Ddx6	T	C	9: 44,540,020 (GRCm39)	V316A	probably damaging	Het
Dhx34	T	C	7: 15,937,799 (GRCm39)	D767G	probably benign	Het
Dnaaf6rt	T	C	1: 31,261,990 (GRCm39)		probably benign	Het
Dtnbp1	T	A	13: 45,155,405 (GRCm39)	D15V	probably damaging	Het
Dtx3l	C	T	16: 35,751,742 (GRCm39)		probably null	Het
Entpd8	T	C	2: 24,973,321 (GRCm39)	I162T	probably damaging	Het
Fam186a	G	T	15: 99,840,347 (GRCm39)	Q1966K	probably benign	Het
Fbxo27	A	C	7: 28,392,785 (GRCm39)	D22A	probably damaging	Het
Fermt3	A	T	19: 6,977,095 (GRCm39)	I577N	probably damaging	Het
Frmd8	A	T	19: 5,923,209 (GRCm39)	S81T	probably damaging	Het
Gm5108	T	A	5: 68,102,012 (GRCm39)		probably benign	Het
Gm9195	T	C	14: 72,718,271 (GRCm39)	Y135C	probably damaging	Het
Gpatch2l	G	A	12: 86,290,958 (GRCm39)	R47H	probably damaging	Het
Kcnh8	A	T	17: 53,284,723 (GRCm39)	I898F	probably benign	Het
Kri1	C	T	9: 21,199,083 (GRCm39)		probably benign	Het
Krt32	T	A	11: 99,977,271 (GRCm39)	I210F	probably damaging	Het
Lama1	G	A	17: 68,060,820 (GRCm39)	C716Y		Het
Lamc2	G	A	1: 153,012,508 (GRCm39)	T722M	probably benign	Het
Lpin3	C	T	2: 160,746,803 (GRCm39)	P766L	probably damaging	Het
Macroh2a1	T	C	13: 56,237,643 (GRCm39)	N206D	probably benign	Het
Marf1	T	C	16: 13,946,721 (GRCm39)	T1169A	probably damaging	Het
Morc1	G	A	16: 48,385,984 (GRCm39)	V536M	probably benign	Het
Morc1	A	T	16: 48,438,909 (GRCm39)	H768L	probably benign	Het
Mpped2	T	A	2: 106,529,878 (GRCm39)	H42Q	possibly damaging	Het
Nfatc1	G	T	18: 80,696,779 (GRCm39)		probably null	Het
Nfkbid	G	A	7: 30,125,192 (GRCm39)	S263N	probably benign	Het
Npas3	C	A	12: 54,115,576 (GRCm39)	Q802K	probably damaging	Het
Or52s1b	T	C	7: 102,822,119 (GRCm39)	T242A	probably damaging	Het
Or5ac20	T	G	16: 59,104,453 (GRCm39)	M136L	possibly damaging	Het
Or5p67	T	A	7: 107,922,101 (GRCm39)	I261F	possibly damaging	Het
Pabpc4l	C	A	3: 46,401,345 (GRCm39)	V100L	possibly damaging	Het
Pagr1a	A	G	7: 126,615,613 (GRCm39)		probably null	Het
Pcdh1	A	T	18: 38,331,553 (GRCm39)	N483K	probably damaging	Het
Pikfyve	C	A	1: 65,291,689 (GRCm39)	P1303T	probably damaging	Het
Plekhh3	T	A	11: 101,056,519 (GRCm39)		probably null	Het
Pnkd	T	A	1: 74,332,335 (GRCm39)		probably null	Het
Pparg	A	T	6: 115,428,011 (GRCm39)	Q166L	probably benign	Het
Psenen	A	G	7: 30,262,932 (GRCm39)		probably null	Het
Rab4a	T	C	8: 124,557,105 (GRCm39)	S142P	probably damaging	Het
Reg3a	T	C	6: 78,358,132 (GRCm39)	V21A	probably benign	Het
Relt	A	C	7: 100,502,321 (GRCm39)		probably benign	Het
Rftn1	T	A	17: 50,344,019 (GRCm39)	T90S	possibly damaging	Het
Ripor3	T	G	2: 167,839,186 (GRCm39)	D105A	probably damaging	Het
Rnase10	T	A	14: 51,247,138 (GRCm39)	I135N	probably damaging	Het
Rsrc1	C	T	3: 66,901,982 (GRCm39)	P44L	unknown	Het
Rttn	A	G	18: 89,047,023 (GRCm39)	E895G	probably damaging	Het
Serpina3a	G	A	12: 104,079,089 (GRCm39)		probably null	Het
Slco5a1	C	T	1: 12,951,617 (GRCm39)	C562Y	probably damaging	Het
Spen	T	C	4: 141,220,770 (GRCm39)	T396A	unknown	Het
Tgfbr3	A	G	5: 107,280,892 (GRCm39)	S623P	probably damaging	Het
Tmem8b	A	G	4: 43,690,192 (GRCm39)	I876V	probably damaging	Het
Tmod3	T	C	9: 75,416,669 (GRCm39)	K221R	probably damaging	Het
Tomm40	G	T	7: 19,436,831 (GRCm39)	D40E	probably damaging	Het
Trav6d-4	G	T	14: 52,991,048 (GRCm39)	G28V	probably damaging	Het
Trav8d-2	G	T	14: 53,279,933 (GRCm39)	A17S	probably benign	Het
Triml2	T	C	8: 43,643,115 (GRCm39)	C158R	possibly damaging	Het
Trip10	A	G	17: 57,562,331 (GRCm39)	E283G	probably damaging	Het
Tubb2b	T	C	13: 34,311,518 (GRCm39)	Y425C	probably damaging	Het
Ubr1	T	C	2: 120,794,074 (GRCm39)	T37A	probably benign	Het
Unc13b	A	G	4: 43,171,403 (GRCm39)		probably benign	Het
Unc13b	A	G	4: 43,173,203 (GRCm39)		probably benign	Het
Vcan	A	T	13: 89,841,526 (GRCm39)	D379E	possibly damaging	Het
Vmn1r44	T	A	6: 89,871,140 (GRCm39)	H295Q	probably benign	Het
Vmn2r16	A	T	5: 109,487,969 (GRCm39)	S281C	probably damaging	Het
Vmn2r84	C	T	10: 130,226,876 (GRCm39)	A321T	possibly damaging	Het
Vsig10l	A	T	7: 43,114,491 (GRCm39)	H271L	possibly damaging	Het
Vwa8	A	T	14: 79,145,596 (GRCm39)	H91L	possibly damaging	Het
Zfp957	T	A	14: 79,451,130 (GRCm39)	E223V	probably damaging	Het

Other mutations in Cmklr1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01447:Cmklr1	APN	5	113,752,282 (GRCm39)	missense	probably benign	0.04
IGL02246:Cmklr1	APN	5	113,752,461 (GRCm39)	missense	probably benign	0.00
IGL02997:Cmklr1	APN	5	113,752,701 (GRCm39)	missense	probably benign	0.15
R0098:Cmklr1	UTSW	5	113,752,531 (GRCm39)	missense	probably benign	0.00
R0360:Cmklr1	UTSW	5	113,752,578 (GRCm39)	missense	probably damaging	1.00
R0364:Cmklr1	UTSW	5	113,752,578 (GRCm39)	missense	probably damaging	1.00
R1217:Cmklr1	UTSW	5	113,752,107 (GRCm39)	missense	probably damaging	1.00
R1702:Cmklr1	UTSW	5	113,751,903 (GRCm39)	missense	probably benign	0.20
R1862:Cmklr1	UTSW	5	113,752,468 (GRCm39)	missense	probably damaging	0.96
R4131:Cmklr1	UTSW	5	113,752,545 (GRCm39)	missense	probably damaging	0.97
R4132:Cmklr1	UTSW	5	113,752,545 (GRCm39)	missense	probably damaging	0.97
R4611:Cmklr1	UTSW	5	113,752,930 (GRCm39)	missense	probably benign	0.05
R4647:Cmklr1	UTSW	5	113,752,701 (GRCm39)	missense	probably damaging	1.00
R5217:Cmklr1	UTSW	5	113,752,710 (GRCm39)	missense	probably damaging	0.98
R5484:Cmklr1	UTSW	5	113,752,990 (GRCm39)	missense	possibly damaging	0.65
R5486:Cmklr1	UTSW	5	113,752,990 (GRCm39)	missense	possibly damaging	0.65
R5487:Cmklr1	UTSW	5	113,752,990 (GRCm39)	missense	possibly damaging	0.65
R5504:Cmklr1	UTSW	5	113,752,990 (GRCm39)	missense	possibly damaging	0.65
R5505:Cmklr1	UTSW	5	113,752,990 (GRCm39)	missense	possibly damaging	0.65
R6301:Cmklr1	UTSW	5	113,752,999 (GRCm39)	start codon destroyed	possibly damaging	0.72
R7342:Cmklr1	UTSW	5	113,752,354 (GRCm39)	missense	probably benign	0.00
R9034:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9041:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9100:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9101:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9109:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9110:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9111:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9137:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9250:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9298:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9299:Cmklr1	UTSW	5	113,752,043 (GRCm39)	missense	probably benign
R9516:Cmklr1	UTSW	5	113,752,341 (GRCm39)	missense	probably benign	0.17
R9521:Cmklr1	UTSW	5	113,752,480 (GRCm39)	missense	probably benign	0.00
Z1176:Cmklr1	UTSW	5	113,751,952 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGACAATCACCAGGCCGTTG -3'
(R):5'- TCAGTGAGAGACCCAGTCTTC -3'

Sequencing Primer
(F):5'- CGTTGCCTAGGAGACCGAG -3'
(R):5'- CTTGCCTACATGAGCATATGTACACG -3'

Posted On

2019-05-13