Incidental Mutation 'R6995:Pxdn'
ID 544153
Institutional Source Beutler Lab
Gene Symbol Pxdn
Ensembl Gene ENSMUSG00000020674
Gene Name peroxidasin
Synonyms 2310075M15Rik, VPO1
MMRRC Submission 045101-MU
Accession Numbers
Essential gene? Possibly essential (E-score: 0.618) question?
Stock # R6995 (G1)
Quality Score 225.009
Status Not validated
Chromosome 12
Chromosomal Location 29987607-30067657 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 30045370 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Threonine at position 373 (I373T)
Ref Sequence ENSEMBL: ENSMUSP00000151320 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000122328] [ENSMUST00000220271]
AlphaFold Q3UQ28
Predicted Effect possibly damaging
Transcript: ENSMUST00000122328
AA Change: I553T

PolyPhen 2 Score 0.951 (Sensitivity: 0.79; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000113703
Gene: ENSMUSG00000020674
AA Change: I553T

DomainStartEndE-ValueType
signal peptide 1 26 N/A INTRINSIC
LRRNT 32 63 2.52e-1 SMART
LRR 62 81 4.09e1 SMART
LRR_TYP 82 105 3.69e-4 SMART
LRR_TYP 106 129 1.45e-2 SMART
LRR_TYP 130 153 8.02e-5 SMART
LRR_TYP 154 177 1.06e-4 SMART
LRRCT 189 241 3.97e-5 SMART
IGc2 255 321 1.59e-15 SMART
IGc2 351 416 3.96e-16 SMART
IGc2 442 506 2.96e-15 SMART
IGc2 534 598 1.2e-15 SMART
Pfam:An_peroxidase 738 1286 1.1e-196 PFAM
VWC 1411 1466 8.8e-15 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000220271
AA Change: I373T

PolyPhen 2 Score 0.951 (Sensitivity: 0.79; Specificity: 0.95)
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.2%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a heme-containing peroxidase that is secreted into the extracellular matrix. It is involved in extracellular matrix formation, and may function in the physiological and pathological fibrogenic response in fibrotic kidney. Mutations in this gene cause corneal opacification and other ocular anomalies, and also microphthalmia and anterior segment dysgenesis. [provided by RefSeq, Aug 2014]
PHENOTYPE: Mice homozygous for an ENU-induced allele exhibit abnormal eye development with early-onset glaucoma and progressive retinal dysgenesis. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 84 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930433I11Rik A G 7: 40,644,149 (GRCm39) Y606C probably benign Het
Acad9 A G 3: 36,139,630 (GRCm39) Y410C probably damaging Het
Acot6 C T 12: 84,156,149 (GRCm39) P366S probably damaging Het
Adrm1b T C 3: 92,336,315 (GRCm39) probably benign Het
Anks1 G T 17: 28,273,273 (GRCm39) G964V probably damaging Het
Apol7a A T 15: 77,274,176 (GRCm39) probably benign Het
Arid3c G A 4: 41,725,087 (GRCm39) A320V probably damaging Het
Bnip3l A T 14: 67,237,101 (GRCm39) N50K probably benign Het
C1qtnf4 C A 2: 90,720,297 (GRCm39) A190D probably benign Het
Calhm5 A T 10: 33,972,189 (GRCm39) M82K probably benign Het
Cdcp3 G T 7: 130,824,400 (GRCm39) W165L probably damaging Het
Cdh1 G T 8: 107,387,545 (GRCm39) V482L probably benign Het
Cdrt4 A C 11: 62,883,486 (GRCm39) I63L probably benign Het
Cic A T 7: 24,970,736 (GRCm39) T156S possibly damaging Het
Ckm A G 7: 19,154,156 (GRCm39) N301S probably benign Het
Colgalt1 C T 8: 72,076,165 (GRCm39) R539C probably damaging Het
Cop1 A G 1: 159,134,154 (GRCm39) D132G probably damaging Het
Cpd G T 11: 76,675,881 (GRCm39) N1257K probably benign Het
Cyp2c67 T C 19: 39,604,123 (GRCm39) H411R probably damaging Het
Cyp2r1 A T 7: 114,152,316 (GRCm39) F5I probably damaging Het
Dclk3 T A 9: 111,296,768 (GRCm39) L104Q possibly damaging Het
Dnah7c A T 1: 46,494,973 (GRCm39) Q67L probably benign Het
Dnm1l C A 16: 16,147,671 (GRCm39) E365* probably null Het
Dst A T 1: 34,205,315 (GRCm39) I502F probably damaging Het
Espl1 T C 15: 102,212,535 (GRCm39) V547A possibly damaging Het
Foxa1 C T 12: 57,589,264 (GRCm39) A319T probably benign Het
Frem1 G T 4: 82,904,838 (GRCm39) H859N probably damaging Het
Frem3 T A 8: 81,339,208 (GRCm39) D500E probably damaging Het
Gpatch2l G A 12: 86,290,958 (GRCm39) R47H probably damaging Het
Grip1 A G 10: 119,822,375 (GRCm39) D394G probably damaging Het
Gsap C A 5: 21,476,235 (GRCm39) T589K possibly damaging Het
Gsg1l A G 7: 125,522,658 (GRCm39) V190A probably damaging Het
Kcnmb1 A T 11: 33,920,131 (GRCm39) T115S probably benign Het
Kirrel2 A C 7: 30,154,604 (GRCm39) F169C probably damaging Het
L3mbtl1 C T 2: 162,803,368 (GRCm39) T397M probably damaging Het
Lama1 G A 17: 68,060,820 (GRCm39) C716Y Het
Lamc2 G A 1: 153,012,508 (GRCm39) T722M probably benign Het
Lrig1 T C 6: 94,588,610 (GRCm39) D513G possibly damaging Het
Lrrk1 T C 7: 65,942,090 (GRCm39) D716G probably damaging Het
Matn4 G A 2: 164,231,584 (GRCm39) R582* probably null Het
Mdn1 A T 4: 32,733,374 (GRCm39) R3133W probably benign Het
Mmp7 A G 9: 7,695,489 (GRCm39) D122G probably damaging Het
Naaladl1 A G 19: 6,165,578 (GRCm39) D744G possibly damaging Het
Nampt T G 12: 32,898,742 (GRCm39) Y453D probably benign Het
Nlrp12 A G 7: 3,288,481 (GRCm39) V677A probably benign Het
Ntng2 T C 2: 29,087,080 (GRCm39) N414S probably damaging Het
Or1e16 A G 11: 73,286,410 (GRCm39) V146A probably benign Het
Or4g17 A G 2: 111,209,708 (GRCm39) D121G probably damaging Het
Or5p52 A G 7: 107,502,829 (GRCm39) R302G probably benign Het
Or9m1b A C 2: 87,836,529 (GRCm39) F189V probably benign Het
Parp4 A C 14: 56,851,196 (GRCm39) Q733P probably damaging Het
Pdcl3 G A 1: 39,034,417 (GRCm39) V56I probably benign Het
Pepd A G 7: 34,721,144 (GRCm39) Y256C probably damaging Het
Plg G T 17: 12,637,938 (GRCm39) R788L probably benign Het
Plod1 A T 4: 148,000,675 (GRCm39) probably benign Het
Ptprc A G 1: 138,016,482 (GRCm39) V513A probably damaging Het
Qrfprl A T 6: 65,418,285 (GRCm39) K151I probably damaging Het
Rbbp8 G A 18: 11,851,965 (GRCm39) G262E probably damaging Het
Rfc2 T A 5: 134,623,104 (GRCm39) Y240* probably null Het
Rps15 A G 10: 80,129,598 (GRCm39) E71G possibly damaging Het
Rsrc1 C T 3: 66,901,982 (GRCm39) P44L unknown Het
Ryr1 A C 7: 28,793,607 (GRCm39) M1287R probably damaging Het
Scart2 G A 7: 139,841,514 (GRCm39) D273N probably benign Het
Serpina9 A G 12: 103,967,495 (GRCm39) L300P probably damaging Het
Sh3rf2 G A 18: 42,234,606 (GRCm39) A130T probably damaging Het
Slc12a8 G A 16: 33,355,263 (GRCm39) W26* probably null Het
Snx18 A T 13: 113,731,265 (GRCm39) H576Q probably damaging Het
Tagln3 G A 16: 45,543,321 (GRCm39) T107I probably benign Het
Thap1 C A 8: 26,652,679 (GRCm39) T139K probably damaging Het
Tle4 T A 19: 14,541,817 (GRCm39) probably null Het
Tmem87a A T 2: 120,193,409 (GRCm39) M502K possibly damaging Het
Tpcn2 A T 7: 144,810,522 (GRCm39) V605E probably benign Het
Trgj1 C A 13: 19,394,529 (GRCm39) probably benign Het
Tsc2 A T 17: 24,847,028 (GRCm39) V179E probably damaging Het
Ubap2l T C 3: 89,916,548 (GRCm39) T909A probably damaging Het
Ubl4b T G 3: 107,462,140 (GRCm39) Q40P probably damaging Het
Vmn1r229 A G 17: 21,035,277 (GRCm39) D174G probably damaging Het
Vmn2r50 A T 7: 9,779,964 (GRCm39) Y472* probably null Het
Vmn2r74 T A 7: 85,601,943 (GRCm39) D565V probably benign Het
Vmn2r74 T A 7: 85,606,860 (GRCm39) probably null Het
Vmn2r82 T A 10: 79,232,377 (GRCm39) V792E probably damaging Het
Zfp335 G A 2: 164,735,210 (GRCm39) Q1179* probably null Het
Zmynd12 A C 4: 119,310,772 (GRCm39) K327Q probably benign Het
Zwilch G A 9: 64,072,731 (GRCm39) Q27* probably null Het
Other mutations in Pxdn
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01024:Pxdn APN 12 30,037,098 (GRCm39) missense probably damaging 1.00
IGL01152:Pxdn APN 12 30,051,936 (GRCm39) missense probably damaging 0.99
IGL01286:Pxdn APN 12 30,032,753 (GRCm39) missense probably benign 0.04
IGL01323:Pxdn APN 12 30,037,136 (GRCm39) missense probably benign 0.00
IGL01338:Pxdn APN 12 30,052,796 (GRCm39) missense probably damaging 1.00
IGL01341:Pxdn APN 12 30,052,486 (GRCm39) missense probably damaging 1.00
IGL01401:Pxdn APN 12 30,051,983 (GRCm39) missense probably damaging 1.00
IGL01580:Pxdn APN 12 30,034,492 (GRCm39) missense probably benign 0.18
IGL01650:Pxdn APN 12 30,052,400 (GRCm39) missense probably benign 0.01
IGL01679:Pxdn APN 12 30,049,901 (GRCm39) missense probably damaging 0.97
IGL01866:Pxdn APN 12 30,034,570 (GRCm39) missense probably benign 0.02
IGL02354:Pxdn APN 12 30,049,188 (GRCm39) missense probably damaging 1.00
IGL02361:Pxdn APN 12 30,049,188 (GRCm39) missense probably damaging 1.00
IGL02427:Pxdn APN 12 30,034,531 (GRCm39) missense probably damaging 1.00
IGL02955:Pxdn APN 12 30,053,156 (GRCm39) missense probably damaging 1.00
IGL03079:Pxdn APN 12 30,052,997 (GRCm39) missense probably damaging 0.97
IGL03111:Pxdn APN 12 30,032,755 (GRCm39) missense probably damaging 0.99
IGL02988:Pxdn UTSW 12 30,053,113 (GRCm39) nonsense probably null
PIT4280001:Pxdn UTSW 12 30,045,327 (GRCm39) missense probably damaging 0.99
PIT4469001:Pxdn UTSW 12 30,055,828 (GRCm39) missense probably benign 0.00
R0070:Pxdn UTSW 12 30,032,726 (GRCm39) missense probably damaging 0.99
R0070:Pxdn UTSW 12 30,032,726 (GRCm39) missense probably damaging 0.99
R0086:Pxdn UTSW 12 30,052,418 (GRCm39) missense possibly damaging 0.95
R0140:Pxdn UTSW 12 30,032,753 (GRCm39) missense probably benign 0.04
R0201:Pxdn UTSW 12 30,052,430 (GRCm39) missense possibly damaging 0.79
R0282:Pxdn UTSW 12 30,034,439 (GRCm39) nonsense probably null
R0310:Pxdn UTSW 12 30,065,528 (GRCm39) missense probably damaging 1.00
R0426:Pxdn UTSW 12 30,037,065 (GRCm39) missense possibly damaging 0.89
R0468:Pxdn UTSW 12 30,044,485 (GRCm39) missense probably damaging 0.99
R0825:Pxdn UTSW 12 30,034,995 (GRCm39) splice site probably benign
R0885:Pxdn UTSW 12 30,053,401 (GRCm39) missense probably benign 0.30
R1420:Pxdn UTSW 12 30,052,067 (GRCm39) missense probably damaging 1.00
R1588:Pxdn UTSW 12 30,052,558 (GRCm39) missense probably damaging 1.00
R2269:Pxdn UTSW 12 30,055,774 (GRCm39) missense probably damaging 0.97
R2280:Pxdn UTSW 12 30,034,905 (GRCm39) missense probably damaging 0.98
R2504:Pxdn UTSW 12 30,053,405 (GRCm39) missense probably damaging 1.00
R2679:Pxdn UTSW 12 30,025,568 (GRCm39) splice site probably benign
R3116:Pxdn UTSW 12 30,052,306 (GRCm39) missense possibly damaging 0.89
R3607:Pxdn UTSW 12 30,040,917 (GRCm39) missense probably benign 0.04
R4033:Pxdn UTSW 12 30,053,224 (GRCm39) missense probably benign 0.19
R4576:Pxdn UTSW 12 30,061,922 (GRCm39) missense probably benign
R4659:Pxdn UTSW 12 30,044,552 (GRCm39) missense probably benign 0.01
R4681:Pxdn UTSW 12 30,062,325 (GRCm39) missense probably benign 0.45
R4968:Pxdn UTSW 12 30,050,011 (GRCm39) missense probably benign 0.25
R5032:Pxdn UTSW 12 30,053,140 (GRCm39) missense probably benign 0.08
R5232:Pxdn UTSW 12 30,040,987 (GRCm39) missense probably benign 0.08
R5366:Pxdn UTSW 12 30,052,899 (GRCm39) missense probably damaging 1.00
R5504:Pxdn UTSW 12 30,052,800 (GRCm39) missense probably damaging 1.00
R5586:Pxdn UTSW 12 30,053,141 (GRCm39) missense probably damaging 0.99
R5739:Pxdn UTSW 12 30,032,333 (GRCm39) missense probably benign 0.03
R5877:Pxdn UTSW 12 30,053,045 (GRCm39) missense probably damaging 1.00
R6167:Pxdn UTSW 12 30,024,000 (GRCm39) missense probably damaging 1.00
R6191:Pxdn UTSW 12 30,032,716 (GRCm39) missense possibly damaging 0.94
R6200:Pxdn UTSW 12 30,053,111 (GRCm39) missense probably damaging 1.00
R6609:Pxdn UTSW 12 30,052,940 (GRCm39) missense probably benign 0.00
R6628:Pxdn UTSW 12 30,049,917 (GRCm39) missense probably damaging 1.00
R6865:Pxdn UTSW 12 30,064,582 (GRCm39) splice site probably null
R6921:Pxdn UTSW 12 30,065,504 (GRCm39) missense probably damaging 0.96
R7211:Pxdn UTSW 12 30,034,903 (GRCm39) missense possibly damaging 0.77
R7220:Pxdn UTSW 12 30,044,479 (GRCm39) missense probably benign 0.02
R7347:Pxdn UTSW 12 30,062,260 (GRCm39) missense probably benign 0.01
R7402:Pxdn UTSW 12 30,052,438 (GRCm39) missense probably damaging 1.00
R7408:Pxdn UTSW 12 30,040,944 (GRCm39) missense probably benign 0.29
R7413:Pxdn UTSW 12 30,052,927 (GRCm39) missense probably benign 0.00
R7447:Pxdn UTSW 12 30,034,926 (GRCm39) missense probably damaging 1.00
R7572:Pxdn UTSW 12 30,056,704 (GRCm39) missense probably damaging 1.00
R7708:Pxdn UTSW 12 30,056,601 (GRCm39) missense probably damaging 0.99
R7815:Pxdn UTSW 12 30,055,824 (GRCm39) missense probably damaging 0.96
R7972:Pxdn UTSW 12 30,056,601 (GRCm39) missense probably damaging 0.99
R8097:Pxdn UTSW 12 30,056,601 (GRCm39) missense probably damaging 0.99
R8098:Pxdn UTSW 12 30,056,601 (GRCm39) missense probably damaging 0.99
R8205:Pxdn UTSW 12 30,056,566 (GRCm39) missense probably damaging 1.00
R8262:Pxdn UTSW 12 30,049,195 (GRCm39) nonsense probably null
R8335:Pxdn UTSW 12 30,052,096 (GRCm39) missense probably damaging 0.99
R8356:Pxdn UTSW 12 30,061,889 (GRCm39) missense probably damaging 0.99
R8437:Pxdn UTSW 12 30,052,043 (GRCm39) missense probably damaging 1.00
R8456:Pxdn UTSW 12 30,061,889 (GRCm39) missense probably damaging 0.99
R8709:Pxdn UTSW 12 30,056,601 (GRCm39) missense probably damaging 0.99
R8772:Pxdn UTSW 12 30,065,463 (GRCm39) missense probably damaging 1.00
R8903:Pxdn UTSW 12 30,040,992 (GRCm39) missense probably benign
R9310:Pxdn UTSW 12 30,052,051 (GRCm39) missense probably damaging 1.00
R9487:Pxdn UTSW 12 30,044,552 (GRCm39) missense possibly damaging 0.90
Z1177:Pxdn UTSW 12 30,040,851 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GAGTATGGGCTCTGCTCTTC -3'
(R):5'- AGGCTGTAGACCTGTAAAGGAC -3'

Sequencing Primer
(F):5'- CTGGAGCTTCGTGGTATGAATCAG -3'
(R):5'- GGCAGATCTCTAAGTTCAAGGCC -3'
Posted On 2019-05-13