Incidental Mutation 'R6998:Sgo2a'
| ID |
544319 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Sgo2a
|
| Ensembl Gene |
ENSMUSG00000026039 |
| Gene Name |
shugoshin 2A |
| Synonyms |
Sgol2a, Sgol2, 1110007N04Rik, D1Ertd8e, 5730576N04Rik, Tripin |
| MMRRC Submission |
045010-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R6998 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
1 |
| Chromosomal Location |
57995971-58025899 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 58016640 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Glycine
at position 661
(D661G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000027202
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000027202]
[ENSMUST00000163061]
|
| AlphaFold |
Q7TSY8 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000027202
AA Change: D661G
PolyPhen 2
Score 0.986 (Sensitivity: 0.74; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000027202
Gene: ENSMUSG00000026039
AA Change: D661G
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
54 |
109 |
N/A |
INTRINSIC |
|
low complexity region
|
182 |
198 |
N/A |
INTRINSIC |
|
low complexity region
|
371 |
381 |
N/A |
INTRINSIC |
|
low complexity region
|
396 |
431 |
N/A |
INTRINSIC |
|
low complexity region
|
583 |
597 |
N/A |
INTRINSIC |
|
low complexity region
|
718 |
729 |
N/A |
INTRINSIC |
|
low complexity region
|
1068 |
1078 |
N/A |
INTRINSIC |
|
low complexity region
|
1112 |
1125 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000163061
|
| SMART Domains |
Protein: ENSMUSP00000124053
Gene: ENSMUSG00000054770
| Domain | Start | End | E-Value | Type |
|---|
|
BTB
|
23 |
123 |
1.01e-2 |
SMART |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.7%
- 20x: 99.0%
|
| Validation Efficiency |
|
| MGI Phenotype |
PHENOTYPE: Mice homozygous for a null mutation display male and female infertility with abnormalities in meiosis but not in mitosis. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 54 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adam30 |
A |
G |
3: 98,162,710 (GRCm38) |
R620G |
probably benign |
Het |
| Adcy1 |
A |
C |
11: 7,079,026 (GRCm38) |
N259H |
probably damaging |
Het |
| Ahctf1 |
G |
A |
1: 179,770,915 (GRCm38) |
R2* |
probably null |
Het |
| Akr1c21 |
A |
G |
13: 4,583,851 (GRCm38) |
I306M |
probably benign |
Het |
| Alg9 |
T |
A |
9: 50,789,621 (GRCm38) |
S230R |
possibly damaging |
Het |
| Armt1 |
T |
A |
10: 4,453,937 (GRCm38) |
C341S |
probably benign |
Het |
| Aspg |
T |
A |
12: 112,112,194 (GRCm38) |
L29M |
probably damaging |
Het |
| Aspm |
C |
T |
1: 139,469,472 (GRCm38) |
T934I |
probably damaging |
Het |
| C1rl |
T |
C |
6: 124,508,902 (GRCm38) |
S411P |
probably damaging |
Het |
| Card14 |
A |
G |
11: 119,322,899 (GRCm38) |
E224G |
probably damaging |
Het |
| Ccdc88c |
T |
C |
12: 100,916,852 (GRCm38) |
H1587R |
probably damaging |
Het |
| Ccp110 |
A |
G |
7: 118,732,897 (GRCm38) |
T963A |
possibly damaging |
Het |
| Cdk11b |
G |
A |
4: 155,648,343 (GRCm38) |
W546* |
probably null |
Het |
| Cyp8b1 |
T |
C |
9: 121,915,993 (GRCm38) |
N91S |
probably benign |
Het |
| Dab2 |
G |
T |
15: 6,424,649 (GRCm38) |
M213I |
possibly damaging |
Het |
| Decr1 |
A |
G |
4: 15,930,960 (GRCm38) |
V124A |
probably damaging |
Het |
| Fbxl13 |
T |
A |
5: 21,543,689 (GRCm38) |
I411F |
probably damaging |
Het |
| Fbxl13 |
T |
C |
5: 21,620,613 (GRCm38) |
I164V |
probably null |
Het |
| Fndc7 |
G |
A |
3: 108,876,648 (GRCm38) |
A215V |
probably benign |
Het |
| Garem2 |
T |
C |
5: 30,114,170 (GRCm38) |
M210T |
possibly damaging |
Het |
| Gpatch2l |
G |
A |
12: 86,244,184 (GRCm38) |
R47H |
probably damaging |
Het |
| Ighv1-52 |
C |
A |
12: 115,145,492 (GRCm38) |
A115S |
probably benign |
Het |
| Igkv6-13 |
A |
G |
6: 70,457,589 (GRCm38) |
S91P |
probably damaging |
Het |
| Ints8 |
T |
A |
4: 11,204,537 (GRCm38) |
E973V |
possibly damaging |
Het |
| Itga3 |
T |
C |
11: 95,051,462 (GRCm38) |
K972R |
probably benign |
Het |
| Klhl33 |
A |
T |
14: 50,893,021 (GRCm38) |
F339I |
probably benign |
Het |
| Krt79 |
T |
C |
15: 101,937,872 (GRCm38) |
M214V |
probably benign |
Het |
| Lgsn |
A |
T |
1: 31,204,193 (GRCm38) |
H452L |
probably benign |
Het |
| Limd2 |
C |
T |
11: 106,158,690 (GRCm38) |
G124D |
probably benign |
Het |
| Luzp1 |
T |
C |
4: 136,543,444 (GRCm38) |
S993P |
probably damaging |
Het |
| Maml2 |
C |
T |
9: 13,621,185 (GRCm38) |
|
probably benign |
Het |
| Mbtd1 |
A |
T |
11: 93,924,612 (GRCm38) |
H342L |
probably damaging |
Het |
| Mfhas1 |
C |
A |
8: 35,591,356 (GRCm38) |
P995Q |
probably damaging |
Het |
| Muc5ac |
T |
C |
7: 141,818,714 (GRCm38) |
F3399S |
possibly damaging |
Het |
| Napb |
T |
C |
2: 148,700,425 (GRCm38) |
Y205C |
probably damaging |
Het |
| Odf2 |
G |
T |
2: 29,912,617 (GRCm38) |
A298S |
probably benign |
Het |
| Or11g7 |
A |
T |
14: 50,453,433 (GRCm38) |
Y127F |
probably benign |
Het |
| Or4s2b |
A |
T |
2: 88,678,508 (GRCm38) |
I218F |
probably benign |
Het |
| Or8k35 |
A |
T |
2: 86,594,144 (GRCm38) |
M228K |
probably damaging |
Het |
| Pcsk5 |
T |
C |
19: 17,473,112 (GRCm38) |
D1124G |
probably benign |
Het |
| Peg10 |
CCACATCAGGATCCACATCAGGATGCACATCAGCATCAGGATCCCCATCAGGATGCACATCAGGATCCACATCAGGATGCACATCAG |
CCACATCAGGATCCACATCAGGATGCACATCAG |
6: 4,756,398 (GRCm38) |
|
probably benign |
Het |
| Pik3c2b |
T |
G |
1: 133,102,372 (GRCm38) |
I1457S |
probably benign |
Het |
| Pole2 |
T |
C |
12: 69,213,906 (GRCm38) |
T167A |
possibly damaging |
Het |
| Rfx7 |
T |
A |
9: 72,618,505 (GRCm38) |
S992R |
probably damaging |
Het |
| Ryr2 |
G |
T |
13: 11,712,166 (GRCm38) |
S2436R |
probably damaging |
Het |
| Sh3glb2 |
T |
A |
2: 30,355,321 (GRCm38) |
T49S |
probably damaging |
Het |
| Slc16a10 |
T |
C |
10: 40,056,503 (GRCm38) |
K354R |
possibly damaging |
Het |
| Slc6a6 |
C |
A |
6: 91,752,438 (GRCm38) |
T568K |
probably benign |
Het |
| Sptbn1 |
T |
C |
11: 30,100,633 (GRCm38) |
T2319A |
probably damaging |
Het |
| Tbl1xr1 |
T |
A |
3: 22,179,290 (GRCm38) |
Y15N |
probably damaging |
Het |
| Thyn1 |
T |
C |
9: 27,006,442 (GRCm38) |
S160P |
probably damaging |
Het |
| Tshz1 |
A |
T |
18: 84,015,841 (GRCm38) |
D147E |
probably benign |
Het |
| Vmn2r50 |
T |
G |
7: 10,037,757 (GRCm38) |
R672S |
probably benign |
Het |
| Zfp663 |
A |
T |
2: 165,354,002 (GRCm38) |
I99N |
possibly damaging |
Het |
|
| Other mutations in Sgo2a |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00507:Sgo2a
|
APN |
1 |
58,016,594 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL00534:Sgo2a
|
APN |
1 |
58,016,344 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL00902:Sgo2a
|
APN |
1 |
58,016,099 (GRCm38) |
missense |
probably benign |
0.00 |
|
IGL01571:Sgo2a
|
APN |
1 |
58,017,974 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL02268:Sgo2a
|
APN |
1 |
58,017,722 (GRCm38) |
missense |
probably benign |
0.10 |
|
IGL02756:Sgo2a
|
APN |
1 |
58,016,350 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02887:Sgo2a
|
APN |
1 |
58,016,352 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL02991:Sgo2a
|
APN |
1 |
58,015,355 (GRCm38) |
intron |
probably benign |
|
|
crazy
|
UTSW |
1 |
58,017,795 (GRCm38) |
missense |
probably benign |
0.11 |
|
harpo
|
UTSW |
1 |
58,019,660 (GRCm38) |
nonsense |
probably null |
|
|
mashugana
|
UTSW |
1 |
58,016,567 (GRCm38) |
missense |
probably damaging |
1.00 |
|
meshugas
|
UTSW |
1 |
58,002,933 (GRCm38) |
nonsense |
probably null |
|
|
R0036:Sgo2a
|
UTSW |
1 |
58,015,628 (GRCm38) |
missense |
probably benign |
0.14 |
|
R0036:Sgo2a
|
UTSW |
1 |
58,015,628 (GRCm38) |
missense |
probably benign |
0.14 |
|
R0095:Sgo2a
|
UTSW |
1 |
58,015,555 (GRCm38) |
missense |
probably benign |
0.11 |
|
R0325:Sgo2a
|
UTSW |
1 |
58,016,697 (GRCm38) |
missense |
probably benign |
|
|
R0464:Sgo2a
|
UTSW |
1 |
58,000,094 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R0699:Sgo2a
|
UTSW |
1 |
57,998,149 (GRCm38) |
nonsense |
probably null |
|
|
R1251:Sgo2a
|
UTSW |
1 |
57,999,962 (GRCm38) |
critical splice acceptor site |
probably null |
|
|
R1355:Sgo2a
|
UTSW |
1 |
58,017,965 (GRCm38) |
missense |
possibly damaging |
0.91 |
|
R1457:Sgo2a
|
UTSW |
1 |
58,015,806 (GRCm38) |
missense |
probably benign |
0.00 |
|
R2244:Sgo2a
|
UTSW |
1 |
58,017,054 (GRCm38) |
missense |
probably benign |
0.00 |
|
R3896:Sgo2a
|
UTSW |
1 |
58,013,646 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R4919:Sgo2a
|
UTSW |
1 |
57,998,134 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R5030:Sgo2a
|
UTSW |
1 |
58,017,759 (GRCm38) |
nonsense |
probably null |
|
|
R5123:Sgo2a
|
UTSW |
1 |
58,016,567 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5317:Sgo2a
|
UTSW |
1 |
58,015,524 (GRCm38) |
missense |
probably benign |
|
|
R5767:Sgo2a
|
UTSW |
1 |
58,019,660 (GRCm38) |
nonsense |
probably null |
|
|
R5844:Sgo2a
|
UTSW |
1 |
58,016,397 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R6018:Sgo2a
|
UTSW |
1 |
58,016,959 (GRCm38) |
missense |
probably benign |
0.01 |
|
R6039:Sgo2a
|
UTSW |
1 |
58,016,616 (GRCm38) |
missense |
possibly damaging |
0.78 |
|
R6039:Sgo2a
|
UTSW |
1 |
58,016,616 (GRCm38) |
missense |
possibly damaging |
0.78 |
|
R6450:Sgo2a
|
UTSW |
1 |
58,002,933 (GRCm38) |
nonsense |
probably null |
|
|
R7073:Sgo2a
|
UTSW |
1 |
58,017,785 (GRCm38) |
missense |
possibly damaging |
0.73 |
|
R7508:Sgo2a
|
UTSW |
1 |
58,017,795 (GRCm38) |
missense |
probably benign |
0.11 |
|
R7722:Sgo2a
|
UTSW |
1 |
58,016,537 (GRCm38) |
missense |
probably benign |
0.45 |
|
R8094:Sgo2a
|
UTSW |
1 |
58,017,141 (GRCm38) |
missense |
possibly damaging |
0.77 |
|
R8176:Sgo2a
|
UTSW |
1 |
58,017,093 (GRCm38) |
missense |
possibly damaging |
0.93 |
|
R8782:Sgo2a
|
UTSW |
1 |
58,017,457 (GRCm38) |
start gained |
probably benign |
|
|
R8899:Sgo2a
|
UTSW |
1 |
58,019,663 (GRCm38) |
missense |
possibly damaging |
0.85 |
|
R8912:Sgo2a
|
UTSW |
1 |
58,017,401 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R9106:Sgo2a
|
UTSW |
1 |
57,998,124 (GRCm38) |
missense |
possibly damaging |
0.59 |
|
R9256:Sgo2a
|
UTSW |
1 |
58,019,613 (GRCm38) |
missense |
possibly damaging |
0.77 |
|
R9688:Sgo2a
|
UTSW |
1 |
58,017,578 (GRCm38) |
missense |
probably damaging |
1.00 |
|
X0065:Sgo2a
|
UTSW |
1 |
58,016,358 (GRCm38) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGTCATGAGCCAAGTATATGAGG -3'
(R):5'- AGGCGTATCAAACTCACTTAAGTC -3'
Sequencing Primer
(F):5'- GGACAATGATAAAGATATTCACGTCC -3'
(R):5'- AAGTTCCTGGGAAGTCTTTATCC -3'
|
| Posted On |
2019-05-13 |
Incidental Mutation