Incidental Mutation 'R7008:Milr1'
ID 544848
Institutional Source Beutler Lab
Gene Symbol Milr1
Ensembl Gene ENSMUSG00000040528
Gene Name mast cell immunoglobulin like receptor 1
Synonyms Gm885, Allergin-1, LOC380732
MMRRC Submission 045110-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7008 (G1)
Quality Score 225.009
Status Not validated
Chromosome 11
Chromosomal Location 106642052-106659620 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 106642140 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Threonine at position 11 (S11T)
Ref Sequence ENSEMBL: ENSMUSP00000138513 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000068021] [ENSMUST00000086353] [ENSMUST00000106794] [ENSMUST00000147326] [ENSMUST00000182023] [ENSMUST00000182479] [ENSMUST00000182896] [ENSMUST00000182908] [ENSMUST00000183111]
AlphaFold Q3TB92
Predicted Effect probably benign
Transcript: ENSMUST00000068021
SMART Domains Protein: ENSMUSP00000067111
Gene: ENSMUSG00000020717

DomainStartEndE-ValueType
signal peptide 1 17 N/A INTRINSIC
IG 32 118 3.54e-4 SMART
Pfam:Ig_3 122 198 4.2e-4 PFAM
IG_like 230 311 1.38e2 SMART
IG_like 327 382 2e-1 SMART
Blast:IG_like 405 486 3e-31 BLAST
IG 497 584 5.49e-1 SMART
transmembrane domain 592 614 N/A INTRINSIC
PDB:2KY5|A 676 718 1e-10 PDB
Predicted Effect probably damaging
Transcript: ENSMUST00000086353
AA Change: S11T

PolyPhen 2 Score 0.985 (Sensitivity: 0.74; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000083538
Gene: ENSMUSG00000040528
AA Change: S11T

DomainStartEndE-ValueType
signal peptide 1 39 N/A INTRINSIC
IG 58 139 3.74e-3 SMART
transmembrane domain 151 173 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000106794
AA Change: S11T

PolyPhen 2 Score 0.985 (Sensitivity: 0.74; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000102406
Gene: ENSMUSG00000040528
AA Change: S11T

DomainStartEndE-ValueType
signal peptide 1 33 N/A INTRINSIC
IG 58 139 1.5e-5 SMART
transmembrane domain 151 173 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000147326
AA Change: S11T

PolyPhen 2 Score 0.985 (Sensitivity: 0.74; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000138742
Gene: ENSMUSG00000040528
AA Change: S11T

DomainStartEndE-ValueType
signal peptide 1 39 N/A INTRINSIC
IG 58 139 3.74e-3 SMART
transmembrane domain 151 173 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000182023
AA Change: S11T

PolyPhen 2 Score 0.845 (Sensitivity: 0.83; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000138286
Gene: ENSMUSG00000040528
AA Change: S11T

DomainStartEndE-ValueType
signal peptide 1 39 N/A INTRINSIC
IG 58 139 3.74e-3 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000182479
SMART Domains Protein: ENSMUSP00000138386
Gene: ENSMUSG00000040528

DomainStartEndE-ValueType
Blast:IG 1 36 3e-19 BLAST
transmembrane domain 48 70 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000182896
AA Change: S11T

PolyPhen 2 Score 0.845 (Sensitivity: 0.83; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000138617
Gene: ENSMUSG00000040528
AA Change: S11T

DomainStartEndE-ValueType
signal peptide 1 39 N/A INTRINSIC
IG 58 139 3.74e-3 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000182908
AA Change: S11T

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000138678
Gene: ENSMUSG00000040528
AA Change: S11T

DomainStartEndE-ValueType
signal peptide 1 39 N/A INTRINSIC
IG 58 139 3.74e-3 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000183111
AA Change: S11T

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000138513
Gene: ENSMUSG00000040528
AA Change: S11T

DomainStartEndE-ValueType
signal peptide 1 39 N/A INTRINSIC
IG 58 139 3.74e-3 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.1%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a null allele have decreased mast cell degranulation and an increased susceptibility to type I hypersensitivity reaction. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ankrd17 T A 5: 90,407,955 (GRCm39) I1421F possibly damaging Het
Arhgef11 C A 3: 87,636,525 (GRCm39) T992K possibly damaging Het
Arid1b T C 17: 5,341,254 (GRCm39) Y853H probably damaging Het
Bcl10 G T 3: 145,639,054 (GRCm39) R232L probably benign Het
Best2 T A 8: 85,739,840 (GRCm39) I76F possibly damaging Het
Card11 G C 5: 140,859,148 (GRCm39) R1133G probably damaging Het
Card9 T C 2: 26,247,811 (GRCm39) D180G possibly damaging Het
Ccdc162 T A 10: 41,428,411 (GRCm39) E119V probably damaging Het
Ccdc168 T C 1: 44,098,785 (GRCm39) D771G probably benign Het
Cd2bp2 T C 7: 126,794,567 (GRCm39) D15G possibly damaging Het
Cdk7 A C 13: 100,854,129 (GRCm39) M120R probably damaging Het
Cryba4 T A 5: 112,399,648 (GRCm39) T2S probably benign Het
Cyp19a1 A T 9: 54,100,609 (GRCm39) M26K probably benign Het
Dgcr2 A G 16: 17,662,865 (GRCm39) S157P probably damaging Het
Dis3l A G 9: 64,217,735 (GRCm39) F782S possibly damaging Het
Ephb4 T A 5: 137,359,536 (GRCm39) S369T probably benign Het
Fhad1 CGG CG 4: 141,645,602 (GRCm39) probably null Het
H1f4 T C 13: 23,806,192 (GRCm39) K97E probably damaging Het
Igf2bp2 A T 16: 21,900,582 (GRCm39) D118E probably benign Het
Iqgap3 GGAGAG GGAG 3: 88,020,078 (GRCm39) probably null Het
Klhl5 T C 5: 65,300,592 (GRCm39) S52P probably benign Het
Lrrc28 A T 7: 67,245,459 (GRCm39) probably benign Het
Map4k4 T G 1: 40,028,131 (GRCm39) D317E probably benign Het
Maz A T 7: 126,623,784 (GRCm39) C66S probably damaging Het
Mbd4 T C 6: 115,827,685 (GRCm39) T43A possibly damaging Het
Mthfd2l T A 5: 91,107,587 (GRCm39) C150S probably damaging Het
Nemf A T 12: 69,388,395 (GRCm39) N325K possibly damaging Het
Nemf C T 12: 69,400,567 (GRCm39) probably null Het
Nod2 T A 8: 89,390,285 (GRCm39) C197* probably null Het
Odf2l A G 3: 144,838,495 (GRCm39) K241E probably damaging Het
Or4z4 G A 19: 12,076,214 (GRCm39) T263I possibly damaging Het
Or5b124 A T 19: 13,610,985 (GRCm39) N170I probably damaging Het
Osbpl10 T G 9: 114,890,916 (GRCm39) D101E probably damaging Het
Osgin1 T C 8: 120,168,233 (GRCm39) V20A possibly damaging Het
Pan3 T A 5: 147,482,503 (GRCm39) C438S probably damaging Het
Plaa A G 4: 94,457,586 (GRCm39) *795Q probably null Het
Prss35 T C 9: 86,638,361 (GRCm39) V377A probably benign Het
Rab5c G A 11: 100,610,789 (GRCm39) R40C probably damaging Het
Rasl12 G A 9: 65,318,151 (GRCm39) V172M probably damaging Het
Rdh16f1 A G 10: 127,626,775 (GRCm39) H276R probably benign Het
Runx2 G A 17: 45,125,079 (GRCm39) P80L probably damaging Het
Sez6l T C 5: 112,612,561 (GRCm39) Y460C probably damaging Het
Sipa1l1 T G 12: 82,409,886 (GRCm39) M600R probably damaging Het
Slc11a2 T C 15: 100,307,205 (GRCm39) Y92C probably damaging Het
Slc4a10 A G 2: 62,117,266 (GRCm39) T712A probably benign Het
Sntb1 A T 15: 55,655,468 (GRCm39) Y249* probably null Het
Spatc1 A G 15: 76,167,923 (GRCm39) I127M probably benign Het
Sting1 C A 18: 35,868,224 (GRCm39) R292L probably damaging Het
Synj1 A T 16: 90,790,833 (GRCm39) N109K probably damaging Het
Tdg T A 10: 82,484,475 (GRCm39) M396K possibly damaging Het
Tmem252 T C 19: 24,651,656 (GRCm39) V75A probably damaging Het
Trim40 T C 17: 37,194,868 (GRCm39) Q142R probably damaging Het
Trip6 T C 5: 137,311,228 (GRCm39) T163A probably damaging Het
Ttn T C 2: 76,724,986 (GRCm39) probably benign Het
Wdr95 T C 5: 149,535,005 (GRCm39) L721P probably benign Het
Zfp385c A T 11: 100,521,513 (GRCm39) D182E probably damaging Het
Zfp597 A G 16: 3,683,631 (GRCm39) F375S probably benign Het
Zfp658 T G 7: 43,223,336 (GRCm39) F537C possibly damaging Het
Zgrf1 T C 3: 127,355,421 (GRCm39) F216L probably benign Het
Other mutations in Milr1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01318:Milr1 APN 11 106,656,071 (GRCm39) missense possibly damaging 0.90
IGL02396:Milr1 APN 11 106,656,065 (GRCm39) nonsense probably null
IGL02525:Milr1 APN 11 106,656,101 (GRCm39) missense probably benign 0.01
IGL02620:Milr1 APN 11 106,645,744 (GRCm39) missense probably damaging 0.96
R0010:Milr1 UTSW 11 106,657,829 (GRCm39) makesense probably null
R0240:Milr1 UTSW 11 106,645,722 (GRCm39) nonsense probably null
R0240:Milr1 UTSW 11 106,645,722 (GRCm39) nonsense probably null
R1087:Milr1 UTSW 11 106,645,848 (GRCm39) missense probably damaging 1.00
R4349:Milr1 UTSW 11 106,654,708 (GRCm39) missense possibly damaging 0.91
R5023:Milr1 UTSW 11 106,657,791 (GRCm39) missense possibly damaging 0.90
R5057:Milr1 UTSW 11 106,657,791 (GRCm39) missense possibly damaging 0.90
R5169:Milr1 UTSW 11 106,645,754 (GRCm39) nonsense probably null
R5181:Milr1 UTSW 11 106,645,806 (GRCm39) missense probably damaging 1.00
R6649:Milr1 UTSW 11 106,648,537 (GRCm39) missense probably benign 0.01
R6868:Milr1 UTSW 11 106,654,747 (GRCm39) missense probably damaging 1.00
R7916:Milr1 UTSW 11 106,654,688 (GRCm39) missense possibly damaging 0.50
R8265:Milr1 UTSW 11 106,654,711 (GRCm39) missense probably benign 0.06
R9149:Milr1 UTSW 11 106,652,105 (GRCm39) missense probably benign 0.02
R9422:Milr1 UTSW 11 106,657,805 (GRCm39) missense probably damaging 0.98
Predicted Primers PCR Primer
(F):5'- AGCTGTTCCAGTAATATGAAGGAC -3'
(R):5'- CCACTGCAGCATTCTGAACTG -3'

Sequencing Primer
(F):5'- CAGTTAAACCAACGAGTCATAGGTC -3'
(R):5'- CCATGAACTCTGTGTAGATCAGGC -3'
Posted On 2019-05-13