Incidental Mutation 'R0609:Cdon'
ID 54536
Institutional Source Beutler Lab
Gene Symbol Cdon
Ensembl Gene ENSMUSG00000038119
Gene Name cell adhesion molecule-related/down-regulated by oncogenes
Synonyms CDO, CAM-related/down-regulated by oncogenes
MMRRC Submission 038798-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.311) question?
Stock # R0609 (G1)
Quality Score 225
Status Not validated
Chromosome 9
Chromosomal Location 35421128-35507652 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) C to A at 35478611 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Proline to Threonine at position 854 (P854T)
Ref Sequence ENSEMBL: ENSMUSP00000113977 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000042842] [ENSMUST00000119129]
AlphaFold Q32MD9
Predicted Effect probably damaging
Transcript: ENSMUST00000042842
AA Change: P854T

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000045547
Gene: ENSMUSG00000038119
AA Change: P854T

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
IGc2 40 103 1.35e-9 SMART
IG 125 212 7.25e-1 SMART
IGc2 233 296 1.38e-6 SMART
IGc2 323 386 4.62e-17 SMART
IGc2 416 506 5e-13 SMART
FN3 573 660 2.18e-2 SMART
FN3 717 800 1.89e-11 SMART
FN3 822 909 7.01e-6 SMART
transmembrane domain 962 984 N/A INTRINSIC
low complexity region 1101 1111 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000084000
Predicted Effect probably damaging
Transcript: ENSMUST00000119129
AA Change: P854T

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000113977
Gene: ENSMUSG00000038119
AA Change: P854T

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
IGc2 40 103 1.35e-9 SMART
IG 125 212 7.25e-1 SMART
IGc2 233 296 1.38e-6 SMART
IGc2 323 386 4.62e-17 SMART
IGc2 416 506 5e-13 SMART
FN3 573 660 2.18e-2 SMART
FN3 717 800 1.89e-11 SMART
FN3 822 909 7.01e-6 SMART
transmembrane domain 962 984 N/A INTRINSIC
low complexity region 1101 1111 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.9%
  • 10x: 97.6%
  • 20x: 95.6%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a cell surface receptor that is a member of the immunoglobulin superfamily. The encoded protein contains three fibronectin type III domains and five immunoglobulin-like C2-type domains. This protein is a member of a cell-surface receptor complex that mediates cell-cell interactions between muscle precursor cells and positively regulates myogenesis. [provided by RefSeq, Aug 2011]
PHENOTYPE: Homozygous null mice display facial defects characteristic of microform holoprosencephaly, are runted, and are prone to death prior to weaning. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 103 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930596D02Rik A T 14: 35,811,461 (GRCm38) probably null Het
Abcb4 T A 5: 8,947,376 (GRCm38) C952S probably damaging Het
Adamtsl2 A G 2: 27,089,635 (GRCm38) D272G probably benign Het
Aim2 G A 1: 173,461,964 (GRCm38) D158N probably damaging Het
Aldh3b1 C T 19: 3,914,024 (GRCm38) R426H probably damaging Het
Apoc2 A G 7: 19,673,353 (GRCm38) S28P probably benign Het
Arfgef3 G A 10: 18,597,431 (GRCm38) T1628I probably benign Het
Atp10a G A 7: 58,819,740 (GRCm38) probably null Het
Bcl2 G A 1: 106,712,562 (GRCm38) R107C probably damaging Het
Bmp8b T A 4: 123,121,899 (GRCm38) D226E probably benign Het
Brsk2 T C 7: 141,998,492 (GRCm38) Y618H probably damaging Het
Casp12 T A 9: 5,346,554 (GRCm38) F27Y probably damaging Het
Casp8 T A 1: 58,844,792 (GRCm38) N439K probably benign Het
Ccdc175 T A 12: 72,157,507 (GRCm38) K253N probably benign Het
Cdc42bpa A G 1: 180,040,179 (GRCm38) H193R probably damaging Het
Cdk17 T C 10: 93,216,472 (GRCm38) M105T probably benign Het
Cep44 A G 8: 56,544,152 (GRCm38) M117T possibly damaging Het
Cep89 A T 7: 35,435,530 (GRCm38) E674D probably damaging Het
Cit C T 5: 115,873,943 (GRCm38) A203V probably damaging Het
Clstn1 C A 4: 149,629,300 (GRCm38) probably null Het
Col7a1 T A 9: 108,958,147 (GRCm38) D565E unknown Het
Cpb1 T A 3: 20,262,474 (GRCm38) Y304F probably damaging Het
Cps1 T G 1: 67,172,802 (GRCm38) Y710D probably damaging Het
Creb3l1 T C 2: 91,987,053 (GRCm38) T372A possibly damaging Het
Dars A G 1: 128,405,381 (GRCm38) V102A probably benign Het
Dhx35 C T 2: 158,817,415 (GRCm38) T168I possibly damaging Het
Dnah5 T C 15: 28,327,779 (GRCm38) S2100P probably benign Het
Dst T C 1: 34,266,960 (GRCm38) probably null Het
Egflam A C 15: 7,253,523 (GRCm38) L351R possibly damaging Het
Elp2 T A 18: 24,626,156 (GRCm38) D523E probably benign Het
Exo5 C A 4: 120,921,684 (GRCm38) G328V probably damaging Het
Fam208a C T 14: 27,461,750 (GRCm38) T722I probably benign Het
Fut9 A G 4: 25,620,811 (GRCm38) M1T probably null Het
Galnt5 A G 2: 58,024,625 (GRCm38) N584S possibly damaging Het
Gbp3 T C 3: 142,567,772 (GRCm38) V360A probably damaging Het
Gdf6 G A 4: 9,859,977 (GRCm38) C353Y probably damaging Het
Gm13089 A T 4: 143,698,503 (GRCm38) D123E probably benign Het
Hace1 A G 10: 45,648,869 (GRCm38) T244A probably damaging Het
Hr T C 14: 70,559,657 (GRCm38) I500T probably benign Het
Ifnl2 A T 7: 28,509,282 (GRCm38) L115Q probably damaging Het
Iigp1 T C 18: 60,389,824 (GRCm38) F5L probably benign Het
Inhbb A G 1: 119,417,416 (GRCm38) L381P probably damaging Het
Irx3 A T 8: 91,801,093 (GRCm38) S50T probably benign Het
Ivns1abp C T 1: 151,360,145 (GRCm38) T363I probably benign Het
Izumo1 A T 7: 45,622,899 (GRCm38) T35S probably benign Het
Kank4 A G 4: 98,777,105 (GRCm38) S651P probably damaging Het
Kit T C 5: 75,610,879 (GRCm38) V232A probably benign Het
Klhl11 T C 11: 100,463,714 (GRCm38) Y427C probably damaging Het
Laptm4b T A 15: 34,258,689 (GRCm38) N36K probably damaging Het
Lrrk1 T C 7: 66,266,615 (GRCm38) probably null Het
Mamdc4 G T 2: 25,564,193 (GRCm38) Q1042K probably benign Het
Mical2 A G 7: 112,321,440 (GRCm38) probably null Het
Ms4a3 C A 19: 11,631,361 (GRCm38) V176F possibly damaging Het
Myo3a T C 2: 22,333,513 (GRCm38) V427A probably benign Het
Myo3a A C 2: 22,396,299 (GRCm38) E626D possibly damaging Het
Nckap5 A T 1: 126,027,288 (GRCm38) L509* probably null Het
Ndufa5 A T 6: 24,519,249 (GRCm38) D64E possibly damaging Het
Nedd4l T C 18: 65,208,461 (GRCm38) Y753H probably damaging Het
Nynrin T C 14: 55,872,761 (GRCm38) V1775A probably damaging Het
Olfr141 A G 2: 86,806,861 (GRCm38) L46S probably damaging Het
Olfr292 T C 7: 86,694,876 (GRCm38) V140A possibly damaging Het
Olfr694 A T 7: 106,688,998 (GRCm38) H244Q probably damaging Het
Olfr735 T C 14: 50,345,926 (GRCm38) Y141C probably damaging Het
Olfr823 G A 10: 130,112,580 (GRCm38) S70F probably damaging Het
Oplah A G 15: 76,302,992 (GRCm38) S570P probably benign Het
Osbpl11 C A 16: 33,234,444 (GRCm38) Y632* probably null Het
Osbpl5 A T 7: 143,694,821 (GRCm38) L644Q probably damaging Het
Pcdhb19 T C 18: 37,497,952 (GRCm38) W267R probably benign Het
Pkhd1l1 A C 15: 44,467,424 (GRCm38) S132R possibly damaging Het
Ptpn13 T A 5: 103,556,145 (GRCm38) S1348T probably benign Het
Rc3h1 T A 1: 160,930,135 (GRCm38) W8R probably damaging Het
Rgs3 T G 4: 62,625,936 (GRCm38) V315G probably damaging Het
Rora T A 9: 69,361,869 (GRCm38) M82K probably damaging Het
Rph3al T C 11: 75,908,969 (GRCm38) I55V probably benign Het
Sag T C 1: 87,812,991 (GRCm38) V45A probably damaging Het
Scn3a T C 2: 65,536,510 (GRCm38) E56G probably damaging Het
Sec24c T G 14: 20,686,948 (GRCm38) V324G probably damaging Het
Sptbn1 A G 11: 30,138,979 (GRCm38) L748S probably damaging Het
Stard9 A T 2: 120,706,306 (GRCm38) D4186V probably damaging Het
Stk39 T C 2: 68,366,167 (GRCm38) E306G probably damaging Het
Sycp1 C A 3: 102,898,849 (GRCm38) probably null Het
Taf2 A C 15: 55,060,050 (GRCm38) L277R probably damaging Het
Tbc1d23 T A 16: 57,173,106 (GRCm38) I566F possibly damaging Het
Tekt5 T C 16: 10,361,304 (GRCm38) T400A possibly damaging Het
Tgfbrap1 T C 1: 43,060,141 (GRCm38) H401R probably benign Het
Tie1 T A 4: 118,476,147 (GRCm38) I841L possibly damaging Het
Tln1 T G 4: 43,544,645 (GRCm38) T1095P possibly damaging Het
Tmem147 A G 7: 30,728,102 (GRCm38) Y72H probably benign Het
Tnfaip2 A G 12: 111,453,507 (GRCm38) N691S probably benign Het
Trim24 G A 6: 37,957,783 (GRCm38) C811Y probably damaging Het
Trim30b T A 7: 104,357,976 (GRCm38) probably benign Het
Trpc4 T G 3: 54,194,768 (GRCm38) L29R probably damaging Het
Trpm6 A T 19: 18,825,862 (GRCm38) I890F probably damaging Het
Ttc23l C T 15: 10,504,536 (GRCm38) E442K probably benign Het
Uggt2 A G 14: 119,095,336 (GRCm38) V62A probably damaging Het
Ugt1a6a C A 1: 88,138,884 (GRCm38) S137R probably benign Het
Unc13a A G 8: 71,658,467 (GRCm38) Y367H probably damaging Het
Vmn2r49 A G 7: 9,976,306 (GRCm38) I833T probably benign Het
Vmn2r7 T C 3: 64,716,479 (GRCm38) D231G probably benign Het
Ythdc2 A T 18: 44,864,357 (GRCm38) M994L probably benign Het
Zcchc6 A T 13: 59,799,782 (GRCm38) C506* probably null Het
Zfp804a G A 2: 82,257,588 (GRCm38) S587N probably damaging Het
Zswim2 A G 2: 83,923,659 (GRCm38) I219T probably benign Het
Other mutations in Cdon
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00832:Cdon APN 9 35,478,116 (GRCm38) missense probably damaging 1.00
IGL01307:Cdon APN 9 35,457,564 (GRCm38) missense probably benign 0.01
IGL01528:Cdon APN 9 35,470,107 (GRCm38) missense possibly damaging 0.95
IGL01663:Cdon APN 9 35,483,214 (GRCm38) missense possibly damaging 0.57
IGL01723:Cdon APN 9 35,503,338 (GRCm38) missense probably benign 0.05
IGL02200:Cdon APN 9 35,483,109 (GRCm38) missense probably benign 0.28
IGL02444:Cdon APN 9 35,473,448 (GRCm38) missense probably benign 0.09
IGL02547:Cdon APN 9 35,478,654 (GRCm38) missense probably damaging 1.00
IGL02620:Cdon APN 9 35,452,799 (GRCm38) missense probably benign 0.00
IGL02861:Cdon APN 9 35,486,957 (GRCm38) missense probably damaging 0.96
IGL02894:Cdon APN 9 35,455,426 (GRCm38) missense probably benign 0.01
IGL03153:Cdon APN 9 35,477,959 (GRCm38) missense probably damaging 1.00
IGL03206:Cdon APN 9 35,503,306 (GRCm38) missense probably benign
IGL03374:Cdon APN 9 35,478,003 (GRCm38) missense possibly damaging 0.46
corleone UTSW 9 35,486,956 (GRCm38) nonsense probably null
indentured UTSW 9 35,452,106 (GRCm38) start codon destroyed probably null 1.00
Molar UTSW 9 35,463,895 (GRCm38) missense probably benign 0.15
Servitude UTSW 9 35,476,948 (GRCm38) missense probably damaging 1.00
PIT4280001:Cdon UTSW 9 35,486,935 (GRCm38) missense probably damaging 1.00
R0045:Cdon UTSW 9 35,486,807 (GRCm38) missense probably benign
R0045:Cdon UTSW 9 35,486,807 (GRCm38) missense probably benign
R0064:Cdon UTSW 9 35,489,227 (GRCm38) missense probably benign 0.03
R0396:Cdon UTSW 9 35,470,130 (GRCm38) missense probably damaging 1.00
R0403:Cdon UTSW 9 35,473,500 (GRCm38) missense probably benign 0.00
R0490:Cdon UTSW 9 35,452,682 (GRCm38) missense probably damaging 1.00
R0547:Cdon UTSW 9 35,457,498 (GRCm38) missense possibly damaging 0.88
R0645:Cdon UTSW 9 35,477,083 (GRCm38) splice site probably null
R0781:Cdon UTSW 9 35,456,437 (GRCm38) splice site probably benign
R1110:Cdon UTSW 9 35,456,437 (GRCm38) splice site probably benign
R1391:Cdon UTSW 9 35,504,189 (GRCm38) missense possibly damaging 0.51
R1574:Cdon UTSW 9 35,452,937 (GRCm38) splice site probably benign
R1851:Cdon UTSW 9 35,483,158 (GRCm38) missense probably damaging 1.00
R2031:Cdon UTSW 9 35,504,074 (GRCm38) missense probably damaging 0.96
R2230:Cdon UTSW 9 35,491,926 (GRCm38) critical splice donor site probably null
R3683:Cdon UTSW 9 35,489,032 (GRCm38) missense possibly damaging 0.89
R3684:Cdon UTSW 9 35,489,032 (GRCm38) missense possibly damaging 0.89
R3685:Cdon UTSW 9 35,489,032 (GRCm38) missense possibly damaging 0.89
R3941:Cdon UTSW 9 35,464,171 (GRCm38) missense probably benign 0.09
R4030:Cdon UTSW 9 35,491,906 (GRCm38) missense probably damaging 1.00
R4084:Cdon UTSW 9 35,478,131 (GRCm38) missense probably damaging 0.98
R4462:Cdon UTSW 9 35,457,580 (GRCm38) missense probably damaging 0.97
R4569:Cdon UTSW 9 35,476,969 (GRCm38) missense probably damaging 1.00
R4677:Cdon UTSW 9 35,478,605 (GRCm38) missense probably damaging 1.00
R4869:Cdon UTSW 9 35,452,904 (GRCm38) missense possibly damaging 0.71
R5032:Cdon UTSW 9 35,489,034 (GRCm38) missense probably damaging 1.00
R5047:Cdon UTSW 9 35,478,639 (GRCm38) missense probably damaging 1.00
R5214:Cdon UTSW 9 35,483,208 (GRCm38) missense probably damaging 1.00
R5341:Cdon UTSW 9 35,470,135 (GRCm38) missense probably damaging 1.00
R5410:Cdon UTSW 9 35,470,035 (GRCm38) missense probably damaging 0.99
R5581:Cdon UTSW 9 35,504,081 (GRCm38) missense probably benign 0.01
R5696:Cdon UTSW 9 35,491,866 (GRCm38) missense possibly damaging 0.69
R5757:Cdon UTSW 9 35,452,772 (GRCm38) missense probably damaging 0.98
R5802:Cdon UTSW 9 35,454,420 (GRCm38) missense probably damaging 0.99
R5845:Cdon UTSW 9 35,457,466 (GRCm38) missense probably damaging 1.00
R5949:Cdon UTSW 9 35,486,951 (GRCm38) missense probably benign 0.32
R6106:Cdon UTSW 9 35,455,408 (GRCm38) nonsense probably null
R6245:Cdon UTSW 9 35,476,939 (GRCm38) missense probably damaging 1.00
R6845:Cdon UTSW 9 35,486,956 (GRCm38) nonsense probably null
R6896:Cdon UTSW 9 35,452,106 (GRCm38) start codon destroyed probably null 1.00
R7060:Cdon UTSW 9 35,486,909 (GRCm38) missense probably damaging 1.00
R7076:Cdon UTSW 9 35,504,150 (GRCm38) missense probably benign 0.00
R7184:Cdon UTSW 9 35,463,895 (GRCm38) missense probably benign 0.15
R7382:Cdon UTSW 9 35,478,648 (GRCm38) missense probably damaging 1.00
R7763:Cdon UTSW 9 35,454,415 (GRCm38) nonsense probably null
R7857:Cdon UTSW 9 35,456,612 (GRCm38) missense possibly damaging 0.79
R7885:Cdon UTSW 9 35,456,522 (GRCm38) missense probably benign 0.01
R7894:Cdon UTSW 9 35,476,948 (GRCm38) missense probably damaging 1.00
R7984:Cdon UTSW 9 35,503,302 (GRCm38) missense probably benign 0.00
R8287:Cdon UTSW 9 35,463,929 (GRCm38) missense probably benign
R8428:Cdon UTSW 9 35,491,867 (GRCm38) missense probably benign 0.21
R8519:Cdon UTSW 9 35,478,654 (GRCm38) missense probably damaging 1.00
R8698:Cdon UTSW 9 35,486,973 (GRCm38) critical splice donor site probably null
R8797:Cdon UTSW 9 35,478,635 (GRCm38) missense probably damaging 1.00
R8995:Cdon UTSW 9 35,486,797 (GRCm38) missense probably damaging 1.00
R9090:Cdon UTSW 9 35,491,879 (GRCm38) missense probably damaging 0.98
R9177:Cdon UTSW 9 35,469,934 (GRCm38) missense probably benign 0.00
R9200:Cdon UTSW 9 35,503,321 (GRCm38) missense probably benign 0.00
R9271:Cdon UTSW 9 35,491,879 (GRCm38) missense probably damaging 0.98
R9330:Cdon UTSW 9 35,488,979 (GRCm38) nonsense probably null
R9477:Cdon UTSW 9 35,491,905 (GRCm38) missense probably damaging 1.00
R9612:Cdon UTSW 9 35,486,905 (GRCm38) missense probably damaging 1.00
R9730:Cdon UTSW 9 35,486,967 (GRCm38) missense probably benign 0.00
Z1177:Cdon UTSW 9 35,491,900 (GRCm38) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CGGTATGTGAGCGAACACCTTCTTG -3'
(R):5'- ACCCAGTCTTAGCCCGTGAAGATG -3'

Sequencing Primer
(F):5'- AGCGAACACCTTCTTGGTGAG -3'
(R):5'- GCCCGTGAAGATGGGTTTG -3'
Posted On 2013-07-11