Mutagenetix > Incidental Mutation

Incidental Mutation 'R7018:Ttc39d'

545475

Institutional Source

Beutler Lab

Gene Symbol

Ttc39d

Ensembl Gene

ENSMUSG00000046196

Gene Name

tetratricopeptide repeat domain 39D

Synonyms

4930560E09Rik

MMRRC Submission

045119-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.153) question?

Stock #

R7018 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

80207460-80217936 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 80216181 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Arginine at position 90 (W90R)

Ref Sequence

ENSEMBL: ENSMUSP00000123158 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000053168] [ENSMUST00000134652]

AlphaFold

Q0VF76

Predicted Effect

probably benign
Transcript: ENSMUST00000053168
AA Change: W90R

PolyPhen 2 Score 0.057 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000053781
Gene: ENSMUSG00000046196
AA Change: W90R

Domain	Start	End	E-Value	Type
Pfam:DUF3808	69	522	9.6e-149	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000134652
AA Change: W90R

PolyPhen 2 Score 0.057 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000123158
Gene: ENSMUSG00000046196
AA Change: W90R

Domain	Start	End	E-Value	Type
Pfam:DUF3808	69	522	7.2e-150	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.7%

Validation Efficiency

100% (64/64)

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Apcdd1	G	T	18: 62,937,049 (GRCm38)	R129L	probably damaging	Het
Arhgef28	C	T	13: 97,965,435 (GRCm38)	V844I	probably damaging	Het
Arhgef5	T	C	6: 43,288,731 (GRCm38)	V1569A	probably damaging	Het
Atr	T	A	9: 95,866,694 (GRCm38)	S431T	probably benign	Het
Cdh11	T	C	8: 102,634,321 (GRCm38)	D795G	possibly damaging	Het
Crygf	T	C	1: 65,927,971 (GRCm38)	S85P	probably benign	Het
Dip2c	T	A	13: 9,659,278 (GRCm38)	Y1385N	probably damaging	Het
Dnah14	G	A	1: 181,626,944 (GRCm38)	V840I	possibly damaging	Het
Dsg1a	T	C	18: 20,328,738 (GRCm38)	F299L	possibly damaging	Het
Fgfr4	A	T	13: 55,166,200 (GRCm38)	S576C	probably damaging	Het
Frmd8	T	C	19: 5,869,518 (GRCm38)	D167G	probably damaging	Het
Gm5105	G	A	3: 138,049,558 (GRCm38)	T89I	unknown	Het
Grhl1	C	T	12: 24,575,997 (GRCm38)	S35L	possibly damaging	Het
Gsn	A	G	2: 35,293,506 (GRCm38)	E242G	probably benign	Het
Hcrtr1	A	G	4: 130,135,868 (GRCm38)	I140T	probably damaging	Het
Ifnlr1	T	C	4: 135,703,824 (GRCm38)	Y208H	possibly damaging	Het
Ighv1-58	T	C	12: 115,312,365 (GRCm38)	Y51C	probably damaging	Het
Iqcj	T	A	3: 68,041,247 (GRCm38)	Y21*	probably null	Het
Kcnc4	T	C	3: 107,458,862 (GRCm38)	Y10C	probably benign	Het
Kcnk7	G	T	19: 5,706,132 (GRCm38)	G129W	probably damaging	Het
Kcnq2	T	A	2: 181,081,724 (GRCm38)	R620*	probably null	Het
Klk13	C	A	7: 43,726,702 (GRCm38)	P267Q	probably benign	Het
Krt1	AAGCTGCCACCCCCAAAGCCACCACCGCCGTAGCTGCCACCCCCAAAGCCACCACCGCCGTAGCTGCCACCCCCAAAGCCACCAC	AAGCTGCCACCCCCAAAGCCACCACCGCCGTAGCTGCCACCCCCAAAGCCACCAC	15: 101,850,378 (GRCm38)		probably benign	Het
L3mbtl4	G	A	17: 68,486,943 (GRCm38)	R314H	probably damaging	Het
Lamc2	T	A	1: 153,136,742 (GRCm38)	M729L	probably benign	Het
Lyst	T	G	13: 13,743,459 (GRCm38)		probably null	Het
Med13l	G	A	5: 118,751,986 (GRCm38)	R1909H	probably damaging	Het
Mstn	T	A	1: 53,064,084 (GRCm38)	L193Q	possibly damaging	Het
Mylk	T	C	16: 35,000,426 (GRCm38)	V125A	possibly damaging	Het
Nalcn	T	A	14: 123,409,821 (GRCm38)	M547L	probably damaging	Het
Nckap5	A	G	1: 126,025,048 (GRCm38)	S1256P	probably damaging	Het
Nkain1	T	C	4: 130,532,118 (GRCm38)	Y189C	probably damaging	Het
Oosp3	T	A	19: 11,699,419 (GRCm38)	D47E	probably benign	Het
Or14j8	A	T	17: 37,952,502 (GRCm38)	I174N	probably damaging	Het
Or5d37	T	A	2: 88,093,256 (GRCm38)	I227F	probably benign	Het
Or5h25	A	G	16: 59,110,607 (GRCm38)	M1T	probably null	Het
Or5p66	T	G	7: 108,286,344 (GRCm38)	I261L	probably benign	Het
Pcdh15	G	T	10: 74,466,354 (GRCm38)	G942W	probably damaging	Het
Pcyox1l	C	A	18: 61,707,554 (GRCm38)		probably benign	Het
Peg3	T	C	7: 6,708,839 (GRCm38)	E1128G	possibly damaging	Het
Pkd1l3	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	GACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCAACAAACATGACATCAGACACACCTGCATCCAGCAGCCCA	8: 109,624,195 (GRCm38)		probably benign	Het
Plscr1	T	A	9: 92,264,662 (GRCm38)	V119D	probably damaging	Het
Prss56	A	T	1: 87,185,948 (GRCm38)	D258V	possibly damaging	Het
Ptpn23	T	G	9: 110,385,816 (GRCm38)	K85Q	possibly damaging	Het
Ranbp3l	C	A	15: 9,007,285 (GRCm38)	S7Y	probably benign	Het
Rnf31	T	C	14: 55,592,233 (GRCm38)	L85P	probably damaging	Het
Rptn	T	C	3: 93,397,900 (GRCm38)	C847R	possibly damaging	Het
Six4	T	A	12: 73,108,953 (GRCm38)	E413D	probably benign	Het
Slc30a2	G	A	4: 134,347,415 (GRCm38)	R161Q	probably damaging	Het
Sned1	T	C	1: 93,284,421 (GRCm38)	V1115A	probably damaging	Het
Spen	T	C	4: 141,493,444 (GRCm38)	K401E	unknown	Het
Srbd1	T	A	17: 86,136,415 (GRCm38)	R128W	possibly damaging	Het
Strc	A	T	2: 121,369,058 (GRCm38)	I1300N	probably damaging	Het
Susd1	T	G	4: 59,390,627 (GRCm38)	T230P	probably benign	Het
Thumpd2	G	T	17: 81,055,897 (GRCm38)	S47*	probably null	Het
Tmprss11a	C	T	5: 86,428,570 (GRCm38)	V141I	probably damaging	Het
Tmprss15	T	C	16: 79,024,853 (GRCm38)	Y438C	possibly damaging	Het
Tnfrsf1a	T	C	6: 125,356,951 (GRCm38)	S56P	probably damaging	Het
Utp25	A	G	1: 193,114,855 (GRCm38)	I563T	probably benign	Het
Vmn2r111	T	C	17: 22,559,051 (GRCm38)	N549S	possibly damaging	Het
Wdr20rt	A	T	12: 65,225,762 (GRCm38)		probably null	Het
Zfp646	C	A	7: 127,882,322 (GRCm38)	Q1224K	probably benign	Het

Other mutations in Ttc39d

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00835:Ttc39d	APN	17	80,216,526 (GRCm38)	missense	probably damaging	0.99
IGL01065:Ttc39d	APN	17	80,216,274 (GRCm38)	missense	probably damaging	0.96
IGL01834:Ttc39d	APN	17	80,216,046 (GRCm38)	missense	probably benign
IGL02541:Ttc39d	APN	17	80,216,446 (GRCm38)	missense	probably damaging	0.99
PIT4687001:Ttc39d	UTSW	17	80,216,925 (GRCm38)	missense	probably damaging	1.00
R0042:Ttc39d	UTSW	17	80,215,950 (GRCm38)	missense	probably benign	0.02
R0042:Ttc39d	UTSW	17	80,215,950 (GRCm38)	missense	probably benign	0.02
R0124:Ttc39d	UTSW	17	80,216,946 (GRCm38)	missense	probably damaging	1.00
R0523:Ttc39d	UTSW	17	80,216,457 (GRCm38)	missense	possibly damaging	0.78
R0801:Ttc39d	UTSW	17	80,216,215 (GRCm38)	missense	probably damaging	1.00
R1581:Ttc39d	UTSW	17	80,216,484 (GRCm38)	missense	probably benign	0.02
R2071:Ttc39d	UTSW	17	80,216,601 (GRCm38)	missense	probably damaging	1.00
R2271:Ttc39d	UTSW	17	80,217,246 (GRCm38)	missense	probably damaging	1.00
R2272:Ttc39d	UTSW	17	80,217,246 (GRCm38)	missense	probably damaging	1.00
R2520:Ttc39d	UTSW	17	80,216,370 (GRCm38)	missense	probably benign	0.17
R2885:Ttc39d	UTSW	17	80,216,715 (GRCm38)	missense	probably benign	0.00
R2939:Ttc39d	UTSW	17	80,217,553 (GRCm38)	missense	probably damaging	1.00
R2940:Ttc39d	UTSW	17	80,217,553 (GRCm38)	missense	probably damaging	1.00
R3081:Ttc39d	UTSW	17	80,217,553 (GRCm38)	missense	probably damaging	1.00
R4669:Ttc39d	UTSW	17	80,217,639 (GRCm38)	missense	probably benign	0.00
R4872:Ttc39d	UTSW	17	80,217,098 (GRCm38)	missense	probably benign	0.00
R4951:Ttc39d	UTSW	17	80,216,033 (GRCm38)	missense	probably benign	0.01
R6260:Ttc39d	UTSW	17	80,216,647 (GRCm38)	nonsense	probably null
R7042:Ttc39d	UTSW	17	80,216,462 (GRCm38)	missense	probably benign	0.00
R7468:Ttc39d	UTSW	17	80,216,150 (GRCm38)	missense	possibly damaging	0.96
R7761:Ttc39d	UTSW	17	80,217,312 (GRCm38)	missense	probably damaging	0.98
R7825:Ttc39d	UTSW	17	80,216,146 (GRCm38)	missense	probably damaging	0.99
R7955:Ttc39d	UTSW	17	80,215,923 (GRCm38)	missense	probably benign
R8192:Ttc39d	UTSW	17	80,216,578 (GRCm38)	missense	probably damaging	0.99
R8400:Ttc39d	UTSW	17	80,216,005 (GRCm38)	missense	probably benign	0.15
R8682:Ttc39d	UTSW	17	80,217,264 (GRCm38)	missense	probably benign	0.01
R9019:Ttc39d	UTSW	17	80,215,920 (GRCm38)	missense	probably benign	0.03
R9453:Ttc39d	UTSW	17	80,217,325 (GRCm38)	missense	probably damaging	1.00
R9480:Ttc39d	UTSW	17	80,216,710 (GRCm38)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TTTAGTCTGAGTGAAGGCGAGC -3'
(R):5'- CCCTGTCTACTCATTAGGCGAG -3'

Sequencing Primer
(F):5'- TGGTGAGAGTAACTAGATCCCAC -3'
(R):5'- CGAGATAAAGTCACTATCCTGGGC -3'

Posted On

2019-05-13