Mutagenetix > Incidental Mutation

Incidental Mutation 'R7024:Ino80b'

545835

Institutional Source

Beutler Lab

Gene Symbol

Ino80b

Ensembl Gene

ENSMUSG00000030034

Gene Name

INO80 complex subunit B

Synonyms

HMG1YL4, Hmga1l4, Znhit4, Papa1, 2510009I23Rik

MMRRC Submission

045125-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7024 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

83098746-83102100 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 83099306 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 211 (T211A)

Ref Sequence

ENSEMBL: ENSMUSP00000109568 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032109] [ENSMUST00000032111] [ENSMUST00000032114] [ENSMUST00000113935] [ENSMUST00000113936] [ENSMUST00000143814] [ENSMUST00000146328] [ENSMUST00000151393] [ENSMUST00000205023]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000032109
AA Change: T181A

PolyPhen 2 Score 0.032 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000032109
Gene: ENSMUSG00000030034
AA Change: T181A

Domain	Start	End	E-Value	Type
low complexity region	23	39	N/A	INTRINSIC
low complexity region	129	137	N/A	INTRINSIC
low complexity region	161	177	N/A	INTRINSIC
Pfam:PAPA-1	198	282	1.6e-27	PFAM
Pfam:zf-HIT	294	325	6.1e-10	PFAM
low complexity region	330	343	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000032111

SMART Domains

Protein: ENSMUSP00000032111
Gene: ENSMUSG00000030035

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
low complexity region	16	31	N/A	INTRINSIC
Pfam:WBP-1	71	177	1.4e-50	PFAM
low complexity region	185	200	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000032114

SMART Domains

Protein: ENSMUSP00000032114
Gene: ENSMUSG00000030036

Domain	Start	End	E-Value	Type
transmembrane domain	40	62	N/A	INTRINSIC
low complexity region	74	90	N/A	INTRINSIC
Pfam:Glyco_hydro_63N	91	267	1.1e-54	PFAM
Pfam:Glyco_hydro_63	349	832	7e-202	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000113935
AA Change: T211A

PolyPhen 2 Score 0.032 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000109568
Gene: ENSMUSG00000030034
AA Change: T211A

Domain	Start	End	E-Value	Type
low complexity region	53	69	N/A	INTRINSIC
low complexity region	159	167	N/A	INTRINSIC
low complexity region	191	207	N/A	INTRINSIC
Pfam:PAPA-1	228	309	4e-23	PFAM
Pfam:zf-HIT	324	355	4.3e-11	PFAM
low complexity region	360	373	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000113936

SMART Domains

Protein: ENSMUSP00000109569
Gene: ENSMUSG00000030035

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
Pfam:WBP-1	36	142	1.2e-50	PFAM
low complexity region	150	165	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000131936

Predicted Effect

probably benign
Transcript: ENSMUST00000143814

Predicted Effect

probably benign
Transcript: ENSMUST00000146328

SMART Domains

Protein: ENSMUSP00000122900
Gene: ENSMUSG00000030035

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
low complexity region	16	30	N/A	INTRINSIC
Pfam:WBP-1	70	176	1.8e-50	PFAM
low complexity region	184	199	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000151393

SMART Domains

Protein: ENSMUSP00000145130
Gene: ENSMUSG00000030035

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
low complexity region	16	31	N/A	INTRINSIC
Pfam:WBP-1	71	96	4.4e-6	PFAM
low complexity region	102	113	N/A	INTRINSIC
low complexity region	171	189	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000205023

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 98.9%

Validation Efficiency

97% (61/63)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a subunit of an ATP-dependent chromatin remodeling complex, INO80, which plays a role in DNA and nucleosome-activated ATPase activity and ATP-dependent nucleosome sliding. Readthrough transcription of this gene into the neighboring downstream gene, which encodes WW domain-binding protein 1, generates a non-coding transcript. [provided by RefSeq, Feb 2011]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310079G19Rik	A	G	16: 88,424,108 (GRCm39)	S128P	probably damaging	Het
Abcc1	G	C	16: 14,231,247 (GRCm39)		probably null	Het
Atg2a	G	A	19: 6,300,249 (GRCm39)	G686S	possibly damaging	Het
Atrnl1	A	T	19: 57,626,882 (GRCm39)		probably null	Het
Brd4	T	C	17: 32,440,884 (GRCm39)		probably benign	Het
Camsap3	A	G	8: 3,658,242 (GRCm39)	E688G	probably damaging	Het
Cc2d2a	T	A	5: 43,891,271 (GRCm39)	S1402R	probably benign	Het
Ccnb1	A	G	13: 100,922,888 (GRCm39)		probably null	Het
Cdc42bpb	G	A	12: 111,292,519 (GRCm39)	H339Y	probably damaging	Het
Ciart	T	A	3: 95,786,392 (GRCm39)	T94S	probably benign	Het
Col6a5	T	A	9: 105,789,674 (GRCm39)	K1540*	probably null	Het
Csmd3	A	T	15: 47,574,387 (GRCm39)	V1969E	probably damaging	Het
Dgka	T	G	10: 128,556,356 (GRCm39)	N710T	probably damaging	Het
Dock6	A	G	9: 21,731,666 (GRCm39)	V1212A	probably benign	Het
Dync2i2	A	G	2: 29,928,278 (GRCm39)	V116A	possibly damaging	Het
En1	C	T	1: 120,531,051 (GRCm39)	P97L	unknown	Het
Esd	T	A	14: 74,982,102 (GRCm39)	F172L	probably damaging	Het
Gfer	C	A	17: 24,914,942 (GRCm39)	D34Y	probably damaging	Het
Gm2832	G	A	14: 41,001,696 (GRCm39)	M68I		Het
Hmgcr	A	G	13: 96,795,418 (GRCm39)	S384P	probably benign	Het
Hsp90aa1	T	C	12: 110,660,546 (GRCm39)	T299A	possibly damaging	Het
Igsf10	A	G	3: 59,239,122 (GRCm39)	M353T	probably benign	Het
Lamb2	C	A	9: 108,366,687 (GRCm39)	T1607K	probably benign	Het
Lhfpl5	A	G	17: 28,801,957 (GRCm39)	E218G	probably benign	Het
Lpo	C	A	11: 87,707,269 (GRCm39)	C248F	probably damaging	Het
Lrrc3	C	T	10: 77,736,825 (GRCm39)	D204N	probably damaging	Het
Mavs	C	A	2: 131,085,051 (GRCm39)	L160I	probably benign	Het
Morn4	C	T	19: 42,066,483 (GRCm39)	D35N	possibly damaging	Het
Mroh8	G	A	2: 157,063,183 (GRCm39)	H813Y	probably benign	Het
Myf6	T	C	10: 107,330,390 (GRCm39)	E59G	probably damaging	Het
Nhsl3	T	A	4: 129,119,201 (GRCm39)	E173V	probably null	Het
Nlrp10	T	A	7: 108,524,405 (GRCm39)	E358D	possibly damaging	Het
Odad2	A	C	18: 7,211,593 (GRCm39)	D760E	probably benign	Het
Optn	T	C	2: 5,057,648 (GRCm39)		probably null	Het
Or12e8	A	G	2: 87,188,066 (GRCm39)	T93A	probably benign	Het
Or13a19	T	C	7: 139,902,759 (GRCm39)	I49T	possibly damaging	Het
Or1e1d-ps1	T	A	11: 73,819,332 (GRCm39)	L94*	probably null	Het
Or1o1	T	C	17: 37,717,095 (GRCm39)	F219L	probably benign	Het
Or5g9	T	A	2: 85,551,952 (GRCm39)	F68I	probably damaging	Het
Or7g28	T	C	9: 19,272,579 (GRCm39)	E24G	possibly damaging	Het
Plxna4	T	A	6: 32,169,204 (GRCm39)	H1331L	probably damaging	Het
Poli	A	T	18: 70,649,920 (GRCm39)	M357K	possibly damaging	Het
Psd4	T	G	2: 24,284,555 (GRCm39)	C140G	possibly damaging	Het
Rab3gap1	T	A	1: 127,818,835 (GRCm39)		probably null	Het
Rasa3	T	C	8: 13,681,826 (GRCm39)	N41S	probably benign	Het
Rps6kc1	A	G	1: 190,532,407 (GRCm39)	S532P	probably benign	Het
S100a3	T	A	3: 90,509,747 (GRCm39)		probably null	Het
Sfrp5	T	C	19: 42,190,204 (GRCm39)	K83E	possibly damaging	Het
Slco1a4	T	C	6: 141,780,434 (GRCm39)	I119V	probably benign	Het
Snx15	T	A	19: 6,170,626 (GRCm39)	Q271L	probably damaging	Het
Sorcs2	C	A	5: 36,178,605 (GRCm39)	S1128I	probably damaging	Het
Tbc1d7	A	T	13: 43,308,211 (GRCm39)	F85I	probably damaging	Het
Thoc7	A	G	14: 13,953,528 (GRCm38)	Y46H	probably damaging	Het
Top1mt	T	A	15: 75,539,297 (GRCm39)	Y366F	probably damaging	Het
Trpv2	C	A	11: 62,475,287 (GRCm39)	S233R	probably benign	Het
Vav1	C	A	17: 57,586,268 (GRCm39)	T24N	probably damaging	Het
Vmn2r111	T	C	17: 22,778,032 (GRCm39)	N549S	possibly damaging	Het
Wdfy4	G	T	14: 32,686,583 (GRCm39)		probably null	Het
Wdr3	A	G	3: 100,062,313 (GRCm39)	S201P	probably benign	Het
Wfs1	C	T	5: 37,124,294 (GRCm39)	D866N	probably damaging	Het
Wnk1	A	T	6: 119,942,687 (GRCm39)		probably benign	Het
Xpot	G	T	10: 121,438,304 (GRCm39)	Q762K	probably benign	Het
Zfp287	A	T	11: 62,605,764 (GRCm39)	L370H	possibly damaging	Het

Other mutations in Ino80b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00943:Ino80b	APN	6	83,101,129 (GRCm39)	missense	probably damaging	1.00
IGL02063:Ino80b	APN	6	83,101,143 (GRCm39)	missense	probably damaging	0.99
R0310:Ino80b	UTSW	6	83,101,072 (GRCm39)	missense	probably damaging	1.00
R2022:Ino80b	UTSW	6	83,101,353 (GRCm39)	missense	probably damaging	0.98
R4051:Ino80b	UTSW	6	83,099,314 (GRCm39)	missense	probably damaging	1.00
R4052:Ino80b	UTSW	6	83,099,314 (GRCm39)	missense	probably damaging	1.00
R4114:Ino80b	UTSW	6	83,101,121 (GRCm39)	missense	probably benign	0.00
R4207:Ino80b	UTSW	6	83,099,314 (GRCm39)	missense	probably damaging	1.00
R4208:Ino80b	UTSW	6	83,099,314 (GRCm39)	missense	probably damaging	1.00
R4751:Ino80b	UTSW	6	83,101,731 (GRCm39)	missense	probably damaging	0.99
R5023:Ino80b	UTSW	6	83,102,023 (GRCm39)	missense	probably damaging	1.00
R6111:Ino80b	UTSW	6	83,101,347 (GRCm39)	missense	probably damaging	1.00
R6298:Ino80b	UTSW	6	83,102,066 (GRCm39)	missense	possibly damaging	0.92
R6467:Ino80b	UTSW	6	83,101,112 (GRCm39)	splice site	probably null
R8816:Ino80b	UTSW	6	83,098,861 (GRCm39)	missense	probably damaging	0.98
R9238:Ino80b	UTSW	6	83,102,314 (GRCm39)	unclassified	probably benign
X0023:Ino80b	UTSW	6	83,098,933 (GRCm39)	missense	possibly damaging	0.95

Predicted Primers

PCR Primer
(F):5'- TAGCACTGTAGGCTGCAAAG -3'
(R):5'- TTTGGACCTGAGTGAGAGGC -3'

Sequencing Primer
(F):5'- TGCAGTAGCGCACCATG -3'
(R):5'- GTGGCACAAGCATTTGATCC -3'

Posted On

2019-05-13