Mutagenetix > Incidental Mutation

Incidental Mutation 'R0610:Nr4a3'

54598

Institutional Source

Beutler Lab

Gene Symbol

Nr4a3

Ensembl Gene

ENSMUSG00000028341

Gene Name

nuclear receptor subfamily 4, group A, member 3

Synonyms

MINOR, Nor1, NOR-1, TEC

MMRRC Submission

038799-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R0610 (G1)

Quality Score

110

Status

Validated

Chromosome

Chromosomal Location

48045153-48086447 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 48051903 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Glutamic Acid at position 248 (A248E)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030025]

AlphaFold

Q9QZB6

Predicted Effect

probably benign
Transcript: ENSMUST00000030025
AA Change: A219E

PolyPhen 2 Score 0.026 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000030025
Gene: ENSMUSG00000028341
AA Change: A219E

Domain	Start	End	E-Value	Type
Blast:HOLI	1	43	4e-18	BLAST
low complexity region	99	115	N/A	INTRINSIC
low complexity region	139	151	N/A	INTRINSIC
low complexity region	196	210	N/A	INTRINSIC
low complexity region	218	239	N/A	INTRINSIC
low complexity region	269	288	N/A	INTRINSIC
ZnF_C4	290	361	4.57e-39	SMART
low complexity region	376	396	N/A	INTRINSIC
HOLI	440	595	2.46e-21	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133539

Predicted Effect

probably benign
Transcript: ENSMUST00000153369
AA Change: A248E

PolyPhen 2 Score 0.103 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000121455
Gene: ENSMUSG00000028341
AA Change: A248E

Domain	Start	End	E-Value	Type
Blast:HOLI	30	73	8e-19	BLAST
low complexity region	129	145	N/A	INTRINSIC
low complexity region	169	181	N/A	INTRINSIC
low complexity region	226	240	N/A	INTRINSIC
low complexity region	248	269	N/A	INTRINSIC
low complexity region	299	318	N/A	INTRINSIC
ZnF_C4	320	391	4.57e-39	SMART
low complexity region	406	426	N/A	INTRINSIC
HOLI	470	625	2.46e-21	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154186

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.4%
3x: 98.9%
10x: 97.4%
20x: 94.7%

Validation Efficiency

99% (97/98)

MGI Phenotype

FUNCTION: This gene encodes a member of the NR4A subfamily of nuclear hormone receptors that bind to DNA and modulate gene expression. The encoded protein has been implicated in T and B lymphocyte apoptosis, and immune cell proliferation. Mice lacking the encoded protein exhibit partial bidirectional circling behavior and inner ear dysfunction. Disruption of this gene in mice also results in defective hippocampal axonal growth and postnatal neuronal cell death. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2015]
PHENOTYPE: Mice homozygous for a null allele exhibit defects in the semicircular canals of the inner ear and bidirectional circling behavior. Mice homozygous for another null allele display embryonic lethality with impaired cell migration during gastrulation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 94 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930433I11Rik	A	T	7: 40,642,480 (GRCm39)	T141S	probably benign	Het
4930578I06Rik	G	A	14: 64,223,714 (GRCm39)	R21*	probably null	Het
Abca15	A	G	7: 119,965,009 (GRCm39)	E757G	possibly damaging	Het
Abca5	T	C	11: 110,192,353 (GRCm39)	T720A	probably benign	Het
Actr5	T	A	2: 158,474,376 (GRCm39)		probably null	Het
Adgrl3	T	C	5: 81,841,563 (GRCm39)		probably benign	Het
Adra1a	A	G	14: 66,875,241 (GRCm39)	D72G	probably damaging	Het
Ahcyl	T	C	16: 45,974,264 (GRCm39)	E371G	probably damaging	Het
Ahnak	G	T	19: 8,985,242 (GRCm39)	L2175F	probably benign	Het
AK157302	A	G	13: 21,679,833 (GRCm39)	T120A	possibly damaging	Het
Apol7a	G	A	15: 77,273,454 (GRCm39)	A336V	probably benign	Het
Asic1	C	A	15: 99,596,780 (GRCm39)	H525Q	probably benign	Het
Atxn7l2	T	C	3: 108,112,090 (GRCm39)	D335G	possibly damaging	Het
Bpgm	G	T	6: 34,481,284 (GRCm39)	R227L	possibly damaging	Het
Calm4	T	A	13: 3,888,320 (GRCm39)	V142E	possibly damaging	Het
Catsperg1	A	T	7: 28,890,044 (GRCm39)	L721Q	probably damaging	Het
Cdh26	A	G	2: 178,091,691 (GRCm39)	I83M	probably damaging	Het
Cep295	A	C	9: 15,234,050 (GRCm39)	S2249A	possibly damaging	Het
Cfhr4	G	A	1: 139,629,584 (GRCm39)	T799I	probably benign	Het
Cln3	A	G	7: 126,179,361 (GRCm39)	F139L	probably damaging	Het
Cmpk2	T	A	12: 26,528,055 (GRCm39)	L424Q	possibly damaging	Het
Col12a1	A	T	9: 79,615,130 (GRCm39)	V53E	probably benign	Het
Csmd1	G	A	8: 15,968,208 (GRCm39)	R3140C	possibly damaging	Het
Dagla	A	G	19: 10,248,922 (GRCm39)	W11R	probably damaging	Het
Dbx2	C	T	15: 95,522,778 (GRCm39)	V310M	probably benign	Het
Disp2	T	A	2: 118,622,717 (GRCm39)	C1150S	probably benign	Het
Dock3	T	C	9: 106,900,987 (GRCm39)	D326G	probably damaging	Het
Dph1	G	T	11: 75,076,783 (GRCm39)		probably benign	Het
Dyrk1b	C	A	7: 27,886,059 (GRCm39)	T594K	probably damaging	Het
Evx2	C	A	2: 74,486,331 (GRCm39)	A353S	probably benign	Het
Garin1b	T	A	6: 29,326,576 (GRCm39)	V231E	probably benign	Het
Greb1	A	C	12: 16,746,443 (GRCm39)	S1276A	probably benign	Het
Hhipl1	T	A	12: 108,285,661 (GRCm39)	C490*	probably null	Het
Hmmr	G	T	11: 40,606,729 (GRCm39)	T231K	probably damaging	Het
Hspa4l	A	C	3: 40,733,832 (GRCm39)	E526D	probably benign	Het
Ibsp	A	G	5: 104,458,000 (GRCm39)	E179G	probably benign	Het
Ift140	C	T	17: 25,254,777 (GRCm39)	A150V	probably benign	Het
Igf2bp2	A	G	16: 21,889,059 (GRCm39)	S416P	probably benign	Het
Ighe	T	C	12: 113,235,363 (GRCm39)	K294E	unknown	Het
Ino80	G	A	2: 119,213,441 (GRCm39)	R1249C	probably damaging	Het
Iqca1	C	A	1: 90,070,453 (GRCm39)	G133V	probably null	Het
Kng2	T	A	16: 22,819,344 (GRCm39)	N231Y	possibly damaging	Het
Lca5	A	T	9: 83,281,792 (GRCm39)	C331S	probably benign	Het
Lrrc1	A	G	9: 77,379,488 (GRCm39)	I101T	possibly damaging	Het
Lrrk2	A	T	15: 91,699,619 (GRCm39)	I2489L	probably benign	Het
Lyz3	A	G	10: 117,073,635 (GRCm39)	F66S	probably benign	Het
Mapk9	A	C	11: 49,754,400 (GRCm39)	N51T	probably benign	Het
Marf1	C	T	16: 13,960,398 (GRCm39)	A549T	probably damaging	Het
Nek2	T	A	1: 191,554,627 (GRCm39)	V113D	probably damaging	Het
Nrp1	T	C	8: 129,229,099 (GRCm39)	I859T	probably damaging	Het
Olfm5	A	T	7: 103,803,652 (GRCm39)	Y195*	probably null	Het
Or13j1	T	A	4: 43,706,400 (GRCm39)	H56L	possibly damaging	Het
Or1n2	T	A	2: 36,797,671 (GRCm39)	W238R	probably damaging	Het
Or8g35	A	G	9: 39,381,119 (GRCm39)	L301P	probably damaging	Het
Oxtr	C	T	6: 112,454,138 (GRCm39)	R42Q	probably benign	Het
Pcnx2	A	G	8: 126,566,426 (GRCm39)	W1006R	probably damaging	Het
Pdpk1	T	C	17: 24,317,145 (GRCm39)		probably null	Het
Ryr2	T	A	13: 11,637,838 (GRCm39)	H3731L	probably damaging	Het
Sdr16c5	T	G	4: 4,016,116 (GRCm39)	E103D	possibly damaging	Het
Setdb2	A	C	14: 59,654,919 (GRCm39)	S324A	possibly damaging	Het
Slc17a3	C	T	13: 24,039,841 (GRCm39)	S293F	probably damaging	Het
Slc17a8	A	T	10: 89,412,488 (GRCm39)	I499K	probably damaging	Het
Slc2a9	T	A	5: 38,537,285 (GRCm39)	I389F	probably damaging	Het
Slc30a1	T	C	1: 191,641,536 (GRCm39)	V394A	probably damaging	Het
Slc41a2	A	G	10: 83,119,592 (GRCm39)	I390T	possibly damaging	Het
Slco1a1	A	G	6: 141,864,187 (GRCm39)		probably null	Het
Slit2	A	G	5: 48,433,016 (GRCm39)	K1053E	possibly damaging	Het
Smarca2	T	A	19: 26,668,791 (GRCm39)	L930Q	probably damaging	Het
Snx6	T	C	12: 54,798,574 (GRCm39)	H387R	probably damaging	Het
Sox5	A	T	6: 143,779,165 (GRCm39)	M622K	possibly damaging	Het
Ston1	C	A	17: 88,942,709 (GRCm39)	N38K	possibly damaging	Het
Strbp	C	T	2: 37,474,089 (GRCm39)	V658I	probably damaging	Het
Strn3	T	C	12: 51,657,231 (GRCm39)		probably null	Het
Suco	T	G	1: 161,687,072 (GRCm39)	D96A	probably benign	Het
Suco	A	G	1: 161,691,601 (GRCm39)		probably benign	Het
Sytl2	A	T	7: 90,030,061 (GRCm39)		probably benign	Het
Tmem41b	T	A	7: 109,580,290 (GRCm39)	M25L	probably benign	Het
Tmem41b	T	A	7: 109,580,292 (GRCm39)	D91V	probably damaging	Het
Tmem50b	C	T	16: 91,380,174 (GRCm39)	A68T	probably damaging	Het
Tmprss11e	G	A	5: 86,855,206 (GRCm39)	Q400*	probably null	Het
Tnfsf13b	G	A	8: 10,081,661 (GRCm39)		probably null	Het
Trappc8	A	G	18: 20,970,245 (GRCm39)	V916A	probably damaging	Het
Trdn	G	T	10: 33,350,449 (GRCm39)	V673F	probably damaging	Het
Trim28	G	T	7: 12,759,711 (GRCm39)		probably benign	Het
Txnrd2	T	C	16: 18,291,632 (GRCm39)	V427A	probably damaging	Het
Uggt1	T	C	1: 36,204,587 (GRCm39)		probably benign	Het
Vmn1r36	A	G	6: 66,693,404 (GRCm39)	L51P	probably damaging	Het
Vmn1r63	T	A	7: 5,806,063 (GRCm39)	M190L	possibly damaging	Het
Vmn2r116	T	A	17: 23,606,286 (GRCm39)	N399K	probably damaging	Het
Vmn2r117	T	C	17: 23,694,488 (GRCm39)	N453S	probably benign	Het
Wbp1l	T	A	19: 46,643,109 (GRCm39)	I370N	probably damaging	Het
Zfp445	T	C	9: 122,682,046 (GRCm39)	K632E	probably benign	Het
Zfp850	C	T	7: 27,688,819 (GRCm39)	R463H	probably damaging	Het
Zyg11a	A	G	4: 108,062,054 (GRCm39)	L249P	probably damaging	Het

Other mutations in Nr4a3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01362:Nr4a3	APN	4	48,051,586 (GRCm39)	missense	possibly damaging	0.48
IGL01407:Nr4a3	APN	4	48,083,201 (GRCm39)	missense	probably benign	0.00
IGL01454:Nr4a3	APN	4	48,067,803 (GRCm39)	missense	probably damaging	1.00
IGL01472:Nr4a3	APN	4	48,071,133 (GRCm39)	missense	probably damaging	1.00
IGL02622:Nr4a3	APN	4	48,051,649 (GRCm39)	missense	probably benign	0.06
IGL03401:Nr4a3	APN	4	48,070,987 (GRCm39)	splice site	probably null
bulbous	UTSW	4	48,083,255 (GRCm39)	missense	probably damaging	0.98
cronus	UTSW	4	48,056,539 (GRCm39)	missense	probably damaging	1.00
I1329:Nr4a3	UTSW	4	48,051,585 (GRCm39)	missense	probably benign	0.12
R0486:Nr4a3	UTSW	4	48,056,525 (GRCm39)	splice site	probably benign
R1170:Nr4a3	UTSW	4	48,083,324 (GRCm39)	missense	probably benign	0.01
R1170:Nr4a3	UTSW	4	48,051,564 (GRCm39)	missense	probably damaging	0.98
R1440:Nr4a3	UTSW	4	48,051,777 (GRCm39)	missense	probably benign
R1977:Nr4a3	UTSW	4	48,056,539 (GRCm39)	missense	probably damaging	1.00
R2016:Nr4a3	UTSW	4	48,083,252 (GRCm39)	missense	probably damaging	1.00
R2046:Nr4a3	UTSW	4	48,067,807 (GRCm39)	missense	possibly damaging	0.82
R2055:Nr4a3	UTSW	4	48,067,771 (GRCm39)	missense	possibly damaging	0.86
R3707:Nr4a3	UTSW	4	48,056,699 (GRCm39)	missense	probably damaging	0.99
R3708:Nr4a3	UTSW	4	48,056,699 (GRCm39)	missense	probably damaging	0.99
R4246:Nr4a3	UTSW	4	48,083,125 (GRCm39)	missense	possibly damaging	0.86
R4657:Nr4a3	UTSW	4	48,051,522 (GRCm39)	missense	probably damaging	1.00
R4870:Nr4a3	UTSW	4	48,051,651 (GRCm39)	missense	possibly damaging	0.73
R5434:Nr4a3	UTSW	4	48,067,861 (GRCm39)	missense	probably damaging	1.00
R5539:Nr4a3	UTSW	4	48,056,525 (GRCm39)	splice site	probably null
R5663:Nr4a3	UTSW	4	48,055,931 (GRCm39)	missense	probably damaging	1.00
R6513:Nr4a3	UTSW	4	48,083,255 (GRCm39)	missense	probably damaging	0.98
R6664:Nr4a3	UTSW	4	48,056,006 (GRCm39)	missense	probably damaging	1.00
R6921:Nr4a3	UTSW	4	48,051,486 (GRCm39)	missense	probably benign	0.04
R6940:Nr4a3	UTSW	4	48,051,486 (GRCm39)	missense	probably benign	0.04
R7076:Nr4a3	UTSW	4	48,055,957 (GRCm39)	missense	probably damaging	1.00
R7322:Nr4a3	UTSW	4	48,083,238 (GRCm39)	missense	probably benign	0.00
R7347:Nr4a3	UTSW	4	48,051,290 (GRCm39)	missense	possibly damaging	0.94
R7348:Nr4a3	UTSW	4	48,051,290 (GRCm39)	missense	possibly damaging	0.94
R7349:Nr4a3	UTSW	4	48,051,290 (GRCm39)	missense	possibly damaging	0.94
R7361:Nr4a3	UTSW	4	48,083,203 (GRCm39)	missense	probably benign	0.00
R7365:Nr4a3	UTSW	4	48,051,290 (GRCm39)	missense	possibly damaging	0.94
R7366:Nr4a3	UTSW	4	48,051,290 (GRCm39)	missense	possibly damaging	0.94
R7418:Nr4a3	UTSW	4	48,051,476 (GRCm39)	missense	probably damaging	1.00
R7659:Nr4a3	UTSW	4	48,051,269 (GRCm39)	missense	probably damaging	1.00
R7895:Nr4a3	UTSW	4	48,051,390 (GRCm39)	missense	probably benign
R7986:Nr4a3	UTSW	4	48,055,954 (GRCm39)	missense	probably damaging	1.00
R8022:Nr4a3	UTSW	4	48,051,510 (GRCm39)	missense	probably damaging	1.00
R8226:Nr4a3	UTSW	4	48,056,588 (GRCm39)	missense	probably damaging	1.00
R8328:Nr4a3	UTSW	4	48,051,323 (GRCm39)	missense	probably damaging	1.00
R8349:Nr4a3	UTSW	4	48,052,170 (GRCm39)	missense	probably benign	0.40
R8403:Nr4a3	UTSW	4	48,051,348 (GRCm39)	missense	probably damaging	1.00
R8449:Nr4a3	UTSW	4	48,052,170 (GRCm39)	missense	probably benign	0.40
R8941:Nr4a3	UTSW	4	48,051,756 (GRCm39)	missense	possibly damaging	0.89
R9026:Nr4a3	UTSW	4	48,052,194 (GRCm39)	missense	possibly damaging	0.66
R9045:Nr4a3	UTSW	4	48,067,694 (GRCm39)	missense	possibly damaging	0.92
R9473:Nr4a3	UTSW	4	48,052,143 (GRCm39)	missense	probably damaging	1.00
R9572:Nr4a3	UTSW	4	48,051,258 (GRCm39)	missense	probably damaging	1.00
R9660:Nr4a3	UTSW	4	48,051,353 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CATGTACTTCAAGCAGTCTCCGCC -3'
(R):5'- ATGTGCCTTCCCCAGATGATGAGC -3'

Sequencing Primer
(F):5'- TGTGGGACGACGAGCTG -3'
(R):5'- AGCTCCTATTGGGTGGCG -3'

Posted On

2013-07-11